HEADER TRANSFERASE 01-FEB-24 8RVC TITLE CRYSTAL STRUCTURE OF ALPHA KETO ACID C-METHYL-TRANSFERASES MRSA BOUND TITLE 2 TO KETOARGININE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-KETOARGININE METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.243; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE; SOURCE 3 ORGANISM_TAXID: 317; SOURCE 4 GENE: MRSA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS S ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASES, BIOCATALYSIS, C- KEYWDS 2 ALKYLATION, ASYMMETRIC METHYLATION, MUTAGENESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.GERHARDT,F.KEMPER,J.N.ANDEXER REVDAT 2 24-JUL-24 8RVC 1 JRNL REVDAT 1 03-JUL-24 8RVC 0 JRNL AUTH C.SOMMER-KAMANN,J.BREILTGENS,Z.ZOU,S.GERHARDT, JRNL AUTH 2 R.SALEEM-BATCHA,F.KEMPER,O.EINSLE,J.N.ANDEXER,M.MULLER JRNL TITL STRUCTURES AND PROTEIN ENGINEERING OF THE ALPHA-KETO ACID JRNL TITL 2 C-METHYLTRANSFERASES SGVM AND MRSA FOR RATIONAL SUBSTRATE JRNL TITL 3 TRANSFER. JRNL REF CHEMBIOCHEM 00258 2024 JRNL REFN ESSN 1439-7633 JRNL PMID 38887142 JRNL DOI 10.1002/CBIC.202400258 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 51885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2596 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 50.36 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2964 REMARK 3 BIN FREE R VALUE : 0.3491 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 52 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5306 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 82 REMARK 3 SOLVENT ATOMS : 371 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.15210 REMARK 3 B22 (A**2) : -4.48950 REMARK 3 B33 (A**2) : 6.64160 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.230 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.179 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.147 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.336 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.145 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 10816 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 19494 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 3231 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1757 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5521 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 698 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8641 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.91 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.88 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.09 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 12.6161 78.8756 39.226 REMARK 3 T TENSOR REMARK 3 T11: 0.0134 T22: -0.0442 REMARK 3 T33: -0.0348 T12: -0.0134 REMARK 3 T13: -0.0168 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.4037 L22: 0.3094 REMARK 3 L33: 0.5797 L12: 0.1512 REMARK 3 L13: 0.0264 L23: -0.0906 REMARK 3 S TENSOR REMARK 3 S11: -0.0625 S12: 0.0148 S13: -0.1089 REMARK 3 S21: 0.0148 S22: 0.0205 S23: 0.1043 REMARK 3 S31: -0.1089 S32: 0.1043 S33: 0.0419 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 15.936 57.282 2.8195 REMARK 3 T TENSOR REMARK 3 T11: -0.0514 T22: 0.0173 REMARK 3 T33: -0.0128 T12: 0.0286 REMARK 3 T13: 0.0016 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.4121 L22: 0.1756 REMARK 3 L33: 0.278 L12: -0.1058 REMARK 3 L13: -0.0525 L23: -0.0713 REMARK 3 S TENSOR REMARK 3 S11: -0.0124 S12: -0.0259 S13: 0.0163 REMARK 3 S21: -0.0259 S22: -0.002 S23: 0.0573 REMARK 3 S31: 0.0163 S32: 0.0573 S33: 0.0144 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8RVC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1292136288. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51937 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 49.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : 0.97800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, 300MM POTASSIUM CHLORIDE, REMARK 280 28% PEG 3350, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 74.22500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.93650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 74.22500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.93650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -146.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 131.74600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 131.74600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 465 MET A 21 REMARK 465 ASN A 22 REMARK 465 LEU A 23 REMARK 465 LEU A 24 REMARK 465 ASP A 25 REMARK 465 SER A 26 REMARK 465 ILE A 27 REMARK 465 LYS A 28 REMARK 465 SER A 29 REMARK 465 GLU A 30 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 GLY B 13 REMARK 465 LEU B 14 REMARK 465 VAL B 15 REMARK 465 PRO B 16 REMARK 465 ARG B 17 REMARK 465 GLY B 18 REMARK 465 SER B 19 REMARK 465 HIS B 20 REMARK 465 MET B 21 REMARK 465 ASN B 22 REMARK 465 LEU B 23 REMARK 465 LEU B 24 REMARK 465 ASP B 25 REMARK 465 SER B 26 REMARK 465 ILE B 27 REMARK 465 LYS B 28 REMARK 465 SER B 29 REMARK 465 GLU B 30 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR B 318 O12 NWG B 407 1.56 REMARK 500 HH TYR A 318 O12 NWG A 1001 1.56 REMARK 500 O CYS A 161 HG SER A 164 1.59 REMARK 500 O CYS B 161 HG SER B 164 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 61 7.76 80.17 REMARK 500 GLU A 70 -52.05 75.49 REMARK 500 LEU A 259 78.95 -119.88 REMARK 500 GLU B 70 -52.10 75.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 667 DISTANCE = 6.09 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1006 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 98 OE2 REMARK 620 2 LEU A 312 O 54.1 REMARK 620 3 HOH A1118 O 64.6 10.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1007 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 152 OD1 REMARK 620 2 THR A 154 OG1 88.8 REMARK 620 3 HOH A1193 O 88.0 80.3 REMARK 620 4 HOH A1202 O 75.5 100.3 163.5 REMARK 620 5 HOH A1220 O 159.5 71.6 94.1 101.7 REMARK 620 6 HOH A1294 O 91.9 156.7 76.4 102.4 108.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1009 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 190 O REMARK 620 2 GLY A 260 O 136.4 REMARK 620 3 HOH A1101 O 84.1 92.4 REMARK 620 4 HOH A1196 O 79.2 139.3 68.4 REMARK 620 5 HOH A1223 O 65.0 100.8 146.4 115.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1008 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 322 O REMARK 620 2 THR A 325 O 91.1 REMARK 620 3 GLN A 327 O 88.5 102.4 REMARK 620 4 HOH A1258 O 167.2 94.1 79.0 REMARK 620 5 HOH A1263 O 94.2 157.2 99.9 85.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 327 OE1 REMARK 620 2 NWG A1001 O04 87.9 REMARK 620 3 NWG A1001 O12 158.3 75.7 REMARK 620 4 HOH A1135 O 86.1 93.0 80.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 409 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 190 O REMARK 620 2 GLY B 260 O 142.8 REMARK 620 3 HOH B 503 O 95.9 101.5 REMARK 620 4 HOH B 573 O 87.1 130.0 67.8 REMARK 620 5 HOH B 627 O 86.6 102.2 136.3 68.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 408 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 322 O REMARK 620 2 THR B 325 O 87.8 REMARK 620 3 GLN B 327 O 86.9 100.5 REMARK 620 4 HOH B 618 O 165.3 99.4 79.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 327 OE1 REMARK 620 2 NWG B 407 O04 87.9 REMARK 620 3 NWG B 407 O12 158.0 75.4 REMARK 620 4 HOH B 522 O 89.8 95.2 77.6 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8R4Z RELATED DB: PDB REMARK 900 NATIVE STRUCTURE DBREF 8RVC A 21 370 UNP D5FKJ3 MRSA_PSESY 1 350 DBREF 8RVC B 21 370 UNP D5FKJ3 MRSA_PSESY 1 350 SEQADV 8RVC MET A 1 UNP D5FKJ3 INITIATING METHIONINE SEQADV 8RVC GLY A 2 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC SER A 3 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC SER A 4 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC HIS A 5 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC HIS A 6 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC HIS A 7 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC HIS A 8 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC HIS A 9 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC HIS A 10 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC SER A 11 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC SER A 12 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC GLY A 13 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC LEU A 14 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC VAL A 15 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC PRO A 16 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC ARG A 17 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC GLY A 18 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC SER A 19 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC HIS A 20 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC MET B 1 UNP D5FKJ3 INITIATING METHIONINE SEQADV 8RVC GLY B 2 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC SER B 3 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC SER B 4 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC HIS B 5 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC HIS B 6 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC HIS B 7 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC HIS B 8 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC HIS B 9 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC HIS B 10 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC SER B 11 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC SER B 12 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC GLY B 13 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC LEU B 14 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC VAL B 15 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC PRO B 16 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC ARG B 17 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC GLY B 18 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC SER B 19 UNP D5FKJ3 EXPRESSION TAG SEQADV 8RVC HIS B 20 UNP D5FKJ3 EXPRESSION TAG SEQRES 1 A 370 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 370 LEU VAL PRO ARG GLY SER HIS MET ASN LEU LEU ASP SER SEQRES 3 A 370 ILE LYS SER GLU ASN THR GLY PHE GLU THR THR LEU ILE SEQRES 4 A 370 LYS GLY ILE GLU PRO ILE ARG GLN PHE VAL LEU ALA ILE SEQRES 5 A 370 SER ILE TYR HIS LEU PHE ASP THR LYS LEU PHE SER LEU SEQRES 6 A 370 LEU ILE LYS HIS GLU VAL ALA SER PRO GLU VAL ALA CYS SEQRES 7 A 370 ASN GLU LEU GLY MET GLU LYS GLU LYS LEU LEU GLY LEU SEQRES 8 A 370 PHE ARG TYR LEU LYS ASN GLU GLY ILE LEU LEU GLU THR SEQRES 9 A 370 ILE ASP GLY PHE SER LEU SER LYS GLU GLY HIS ALA LEU SEQRES 10 A 370 ALA PRO PHE GLU GLY TRP TYR VAL MET LEU VAL GLY GLY SEQRES 11 A 370 TYR ALA THR THR PHE LEU GLN MET GLY GLU ARG LEU GLN SEQRES 12 A 370 GLU GLY ALA GLY TRP ALA THR ARG ASP ALA THR LYS VAL SEQRES 13 A 370 GLY VAL GLY SER CYS GLY ILE SER HIS PHE ASP ALA ILE SEQRES 14 A 370 PRO LEU THR ARG SER LEU MET ALA GLN ALA PRO GLY THR SEQRES 15 A 370 CYS THR LYS LEU LEU ASP LEU GLY CYS GLY ASN GLY ARG SEQRES 16 A 370 TYR LEU ALA GLU PHE CYS LYS ALA LEU PRO GLN ILE GLN SEQRES 17 A 370 ALA TRP GLY ALA GLU PRO ASP ARG GLY GLY PHE GLU GLU SEQRES 18 A 370 ALA VAL ASP LEU ILE GLU LYS GLU GLY LEU SER HIS ARG SEQRES 19 A 370 VAL HIS ILE SER HIS SER GLY ALA VAL GLU PHE LEU ASP SEQRES 20 A 370 SER ASP PHE ASP PHE GLU PRO ASP PHE ILE VAL LEU GLY SEQRES 21 A 370 PHE VAL LEU HIS GLU ILE LEU GLY GLN ALA GLY ARG PRO SEQRES 22 A 370 ALA VAL VAL ASN PHE LEU LYS LYS ILE VAL HIS ARG PHE SEQRES 23 A 370 PRO ALA ILE ASN LEU ILE ILE ILE GLU VAL ASP ASN GLN SEQRES 24 A 370 PHE ASP ASN ALA GLY ALA MET ARG HIS GLY LEU ALA LEU SEQRES 25 A 370 ALA TYR TYR ASN PRO TYR TYR LEU LEU HIS CYS PHE THR SEQRES 26 A 370 ASN GLN LEU LEU VAL GLN ASP ALA ASP TRP LEU ASP ILE SEQRES 27 A 370 PHE ALA GLU ALA GLY LEU SER LEU VAL THR ARG GLU THR SEQRES 28 A 370 THR SER ASP GLN VAL ASP SER THR GLY LEU GLU ILE GLY SEQRES 29 A 370 TYR LEU LEU ARG ARG ALA SEQRES 1 B 370 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 370 LEU VAL PRO ARG GLY SER HIS MET ASN LEU LEU ASP SER SEQRES 3 B 370 ILE LYS SER GLU ASN THR GLY PHE GLU THR THR LEU ILE SEQRES 4 B 370 LYS GLY ILE GLU PRO ILE ARG GLN PHE VAL LEU ALA ILE SEQRES 5 B 370 SER ILE TYR HIS LEU PHE ASP THR LYS LEU PHE SER LEU SEQRES 6 B 370 LEU ILE LYS HIS GLU VAL ALA SER PRO GLU VAL ALA CYS SEQRES 7 B 370 ASN GLU LEU GLY MET GLU LYS GLU LYS LEU LEU GLY LEU SEQRES 8 B 370 PHE ARG TYR LEU LYS ASN GLU GLY ILE LEU LEU GLU THR SEQRES 9 B 370 ILE ASP GLY PHE SER LEU SER LYS GLU GLY HIS ALA LEU SEQRES 10 B 370 ALA PRO PHE GLU GLY TRP TYR VAL MET LEU VAL GLY GLY SEQRES 11 B 370 TYR ALA THR THR PHE LEU GLN MET GLY GLU ARG LEU GLN SEQRES 12 B 370 GLU GLY ALA GLY TRP ALA THR ARG ASP ALA THR LYS VAL SEQRES 13 B 370 GLY VAL GLY SER CYS GLY ILE SER HIS PHE ASP ALA ILE SEQRES 14 B 370 PRO LEU THR ARG SER LEU MET ALA GLN ALA PRO GLY THR SEQRES 15 B 370 CYS THR LYS LEU LEU ASP LEU GLY CYS GLY ASN GLY ARG SEQRES 16 B 370 TYR LEU ALA GLU PHE CYS LYS ALA LEU PRO GLN ILE GLN SEQRES 17 B 370 ALA TRP GLY ALA GLU PRO ASP ARG GLY GLY PHE GLU GLU SEQRES 18 B 370 ALA VAL ASP LEU ILE GLU LYS GLU GLY LEU SER HIS ARG SEQRES 19 B 370 VAL HIS ILE SER HIS SER GLY ALA VAL GLU PHE LEU ASP SEQRES 20 B 370 SER ASP PHE ASP PHE GLU PRO ASP PHE ILE VAL LEU GLY SEQRES 21 B 370 PHE VAL LEU HIS GLU ILE LEU GLY GLN ALA GLY ARG PRO SEQRES 22 B 370 ALA VAL VAL ASN PHE LEU LYS LYS ILE VAL HIS ARG PHE SEQRES 23 B 370 PRO ALA ILE ASN LEU ILE ILE ILE GLU VAL ASP ASN GLN SEQRES 24 B 370 PHE ASP ASN ALA GLY ALA MET ARG HIS GLY LEU ALA LEU SEQRES 25 B 370 ALA TYR TYR ASN PRO TYR TYR LEU LEU HIS CYS PHE THR SEQRES 26 B 370 ASN GLN LEU LEU VAL GLN ASP ALA ASP TRP LEU ASP ILE SEQRES 27 B 370 PHE ALA GLU ALA GLY LEU SER LEU VAL THR ARG GLU THR SEQRES 28 B 370 THR SER ASP GLN VAL ASP SER THR GLY LEU GLU ILE GLY SEQRES 29 B 370 TYR LEU LEU ARG ARG ALA HET NWG A1001 22 HET MG A1002 1 HET PEG A1003 17 HET PGE A1004 24 HET EDO A1005 10 HET NA A1006 1 HET NA A1007 1 HET NA A1008 1 HET MG A1009 1 HET MG B 401 1 HET PEG B 402 17 HET PEG B 403 17 HET PEG B 404 17 HET EDO B 405 10 HET EDO B 406 10 HET NWG B 407 22 HET NA B 408 1 HET MG B 409 1 HETNAM NWG 5-[(DIAMINOMETHYLIDENE)AMINO]-2-OXOPENTANOIC ACID HETNAM MG MAGNESIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PGE TRIETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NWG 2(C6 H11 N3 O3) FORMUL 4 MG 4(MG 2+) FORMUL 5 PEG 4(C4 H10 O3) FORMUL 6 PGE C6 H14 O4 FORMUL 7 EDO 3(C2 H6 O2) FORMUL 8 NA 4(NA 1+) FORMUL 21 HOH *371(H2 O) HELIX 1 AA1 GLY A 33 ILE A 42 1 10 HELIX 2 AA2 ILE A 42 THR A 60 1 19 HELIX 3 AA3 LYS A 61 GLU A 70 1 10 HELIX 4 AA4 SER A 73 GLY A 82 1 10 HELIX 5 AA5 GLU A 84 GLU A 98 1 15 HELIX 6 AA6 SER A 111 ALA A 116 1 6 HELIX 7 AA7 LEU A 117 PRO A 119 5 3 HELIX 8 AA8 PHE A 120 VAL A 128 1 9 HELIX 9 AA9 TYR A 131 GLN A 137 1 7 HELIX 10 AB1 GLN A 137 LEU A 142 1 6 HELIX 11 AB2 ASP A 152 HIS A 165 1 14 HELIX 12 AB3 ASP A 167 GLN A 178 1 12 HELIX 13 AB4 GLY A 194 LEU A 204 1 11 HELIX 14 AB5 ASP A 215 GLU A 229 1 15 HELIX 15 AB6 GLY A 241 SER A 248 1 8 HELIX 16 AB7 VAL A 262 GLY A 271 1 10 HELIX 17 AB8 GLY A 271 PHE A 286 1 16 HELIX 18 AB9 GLY A 304 ARG A 307 5 4 HELIX 19 AC1 HIS A 308 TYR A 314 1 7 HELIX 20 AC2 TYR A 314 THR A 325 1 12 HELIX 21 AC3 GLN A 331 ALA A 342 1 12 HELIX 22 AC4 GLY B 33 ILE B 42 1 10 HELIX 23 AC5 ILE B 42 THR B 60 1 19 HELIX 24 AC6 LYS B 61 GLU B 70 1 10 HELIX 25 AC7 SER B 73 GLY B 82 1 10 HELIX 26 AC8 GLU B 84 GLU B 98 1 15 HELIX 27 AC9 SER B 111 ALA B 116 1 6 HELIX 28 AD1 LEU B 117 PRO B 119 5 3 HELIX 29 AD2 PHE B 120 VAL B 128 1 9 HELIX 30 AD3 TYR B 131 GLN B 137 1 7 HELIX 31 AD4 GLN B 137 LEU B 142 1 6 HELIX 32 AD5 ASP B 152 HIS B 165 1 14 HELIX 33 AD6 ASP B 167 GLN B 178 1 12 HELIX 34 AD7 GLY B 194 LEU B 204 1 11 HELIX 35 AD8 ASP B 215 GLY B 230 1 16 HELIX 36 AD9 GLY B 241 SER B 248 1 8 HELIX 37 AE1 VAL B 262 GLY B 271 1 10 HELIX 38 AE2 GLY B 271 PHE B 286 1 16 HELIX 39 AE3 GLY B 304 ARG B 307 5 4 HELIX 40 AE4 HIS B 308 TYR B 314 1 7 HELIX 41 AE5 TYR B 314 THR B 325 1 12 HELIX 42 AE6 GLN B 331 ALA B 342 1 12 SHEET 1 AA1 2 LEU A 101 GLU A 103 0 SHEET 2 AA1 2 PHE A 108 LEU A 110 -1 O SER A 109 N LEU A 102 SHEET 1 AA2 7 VAL A 235 HIS A 239 0 SHEET 2 AA2 7 GLN A 208 GLU A 213 1 N GLY A 211 O HIS A 236 SHEET 3 AA2 7 LYS A 185 LEU A 189 1 N ASP A 188 O TRP A 210 SHEET 4 AA2 7 PHE A 256 GLY A 260 1 O VAL A 258 N LEU A 187 SHEET 5 AA2 7 ASN A 290 VAL A 296 1 O ILE A 292 N ILE A 257 SHEET 6 AA2 7 GLU A 362 ARG A 369 -1 O LEU A 367 N LEU A 291 SHEET 7 AA2 7 LEU A 344 THR A 351 -1 N GLU A 350 O GLY A 364 SHEET 1 AA3 2 LEU B 101 GLU B 103 0 SHEET 2 AA3 2 PHE B 108 LEU B 110 -1 O SER B 109 N LEU B 102 SHEET 1 AA4 7 VAL B 235 HIS B 239 0 SHEET 2 AA4 7 GLN B 208 GLU B 213 1 N GLY B 211 O HIS B 236 SHEET 3 AA4 7 LYS B 185 LEU B 189 1 N ASP B 188 O TRP B 210 SHEET 4 AA4 7 PHE B 256 GLY B 260 1 O VAL B 258 N LEU B 187 SHEET 5 AA4 7 ASN B 290 VAL B 296 1 O ILE B 292 N ILE B 257 SHEET 6 AA4 7 GLU B 362 ARG B 369 -1 O TYR B 365 N ILE B 293 SHEET 7 AA4 7 LEU B 344 THR B 351 -1 N GLU B 350 O GLY B 364 LINK OE2 GLU A 98 NA NA A1006 1555 2575 2.58 LINK OD1 ASP A 152 NA NA A1007 1555 1555 2.62 LINK OG1 THR A 154 NA NA A1007 1555 1555 2.75 LINK O GLY A 190 MG MG A1009 1555 1555 2.61 LINK O GLY A 260 MG MG A1009 1555 1555 2.38 LINK O LEU A 312 NA NA A1006 1555 1555 2.67 LINK O HIS A 322 NA NA A1008 1555 1555 2.23 LINK O THR A 325 NA NA A1008 1555 1555 2.33 LINK OE1 GLN A 327 MG MG A1002 1555 1555 2.25 LINK O GLN A 327 NA NA A1008 1555 1555 2.24 LINK O04 NWG A1001 MG MG A1002 1555 1555 1.94 LINK O12 NWG A1001 MG MG A1002 1555 1555 2.36 LINK MG MG A1002 O HOH A1135 1555 1555 2.11 LINK NA NA A1006 O HOH A1118 1555 2575 2.73 LINK NA NA A1007 O HOH A1193 1555 1555 2.66 LINK NA NA A1007 O HOH A1202 1555 1555 2.61 LINK NA NA A1007 O HOH A1220 1555 1555 2.24 LINK NA NA A1007 O HOH A1294 1555 1555 3.00 LINK NA NA A1008 O HOH A1258 1555 1555 2.74 LINK NA NA A1008 O HOH A1263 1555 1555 2.24 LINK MG MG A1009 O HOH A1101 1555 1555 2.62 LINK MG MG A1009 O HOH A1196 1555 1555 2.50 LINK MG MG A1009 O HOH A1223 1555 1555 2.88 LINK O GLY B 190 MG MG B 409 1555 1555 2.47 LINK O GLY B 260 MG MG B 409 1555 1555 2.42 LINK O HIS B 322 NA NA B 408 1555 1555 2.30 LINK O THR B 325 NA NA B 408 1555 1555 2.39 LINK OE1 GLN B 327 MG MG B 401 1555 1555 2.24 LINK O GLN B 327 NA NA B 408 1555 1555 2.24 LINK MG MG B 401 O04 NWG B 407 1555 1555 1.94 LINK MG MG B 401 O12 NWG B 407 1555 1555 2.36 LINK MG MG B 401 O HOH B 522 1555 1555 2.30 LINK NA NA B 408 O HOH B 618 1555 1555 2.66 LINK MG MG B 409 O HOH B 503 1555 1555 2.33 LINK MG MG B 409 O HOH B 573 1555 1555 2.50 LINK MG MG B 409 O HOH B 627 1555 1555 2.18 CRYST1 148.450 65.873 75.041 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006736 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015181 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013326 0.00000