HEADER LYASE 08-FEB-24 8RYD TITLE AZEJ IN COMPLEX WITH SAH FROM PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLASS I SAM-DEPENDENT METHYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: PA3335; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NATURAL PRODUCT BIOSYNTHESIS, NON-PROTEINOGENIC AMINO ACID, PROLINE- KEYWDS 2 HOMOLOGUE, SAM-TURNOVER, CATALYSIS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR T.J.KLAUBERT,J.GELLNER,C.BERNARD,J.EFFERT,C.LOMBARD,V.R.I.KAILA, AUTHOR 2 H.B.BODE,Y.LI,M.GROLL REVDAT 1 01-JAN-25 8RYD 0 JRNL AUTH T.J.KLAUBERT,J.GELLNER,C.BERNARD,J.EFFERT,C.LOMBARD, JRNL AUTH 2 V.R.I.KAILA,H.B.BODE,Y.LI,M.GROLL JRNL TITL MOLECULAR BASIS FOR AZETIDINE-2-CARBOXYLIC ACID BIOSYNTHESIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 20801 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1095 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1538 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7108 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.36000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : -3.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.443 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.305 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 37.974 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7334 ; 0.001 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6923 ; 0.001 ; 0.014 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9929 ; 1.168 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15803 ; 1.032 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 906 ; 5.227 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 450 ;23.821 ;19.378 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1201 ;13.613 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 96 ;13.524 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 937 ; 0.029 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8372 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1848 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3648 ; 1.190 ; 6.046 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3648 ; 1.190 ; 6.046 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4546 ; 1.799 ; 9.066 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4547 ; 1.799 ; 9.066 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3686 ; 1.057 ; 6.243 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3686 ; 1.057 ; 6.243 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5384 ; 1.557 ; 9.290 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7602 ; 2.637 ;68.993 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7603 ; 2.637 ;68.996 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 14255 ; 0.190 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 240 REMARK 3 ORIGIN FOR THE GROUP (A): -17.160 15.480 -28.107 REMARK 3 T TENSOR REMARK 3 T11: 0.1126 T22: 0.1280 REMARK 3 T33: 0.0948 T12: 0.1163 REMARK 3 T13: -0.0359 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 1.6785 L22: 1.6819 REMARK 3 L33: 1.3728 L12: -0.4740 REMARK 3 L13: 0.0912 L23: 0.1434 REMARK 3 S TENSOR REMARK 3 S11: -0.0526 S12: -0.0485 S13: -0.0547 REMARK 3 S21: -0.0708 S22: -0.0002 S23: 0.1151 REMARK 3 S31: -0.1581 S32: -0.1590 S33: 0.0528 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 16 B 245 REMARK 3 ORIGIN FOR THE GROUP (A): 7.000 21.576 -16.811 REMARK 3 T TENSOR REMARK 3 T11: 0.1677 T22: 0.0206 REMARK 3 T33: 0.0592 T12: 0.0202 REMARK 3 T13: 0.0165 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 1.5227 L22: 2.3845 REMARK 3 L33: 1.2172 L12: 0.2160 REMARK 3 L13: -0.1053 L23: 0.0679 REMARK 3 S TENSOR REMARK 3 S11: 0.1424 S12: -0.0949 S13: -0.0395 REMARK 3 S21: -0.2106 S22: -0.1675 S23: -0.1417 REMARK 3 S31: -0.2648 S32: -0.0611 S33: 0.0251 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 16 C 245 REMARK 3 ORIGIN FOR THE GROUP (A): 13.976 17.915 19.301 REMARK 3 T TENSOR REMARK 3 T11: 0.1796 T22: 0.1654 REMARK 3 T33: 0.0260 T12: -0.1654 REMARK 3 T13: -0.0070 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.8830 L22: 2.0205 REMARK 3 L33: 0.9381 L12: 0.1528 REMARK 3 L13: 0.4460 L23: 0.2339 REMARK 3 S TENSOR REMARK 3 S11: -0.0962 S12: -0.0511 S13: 0.0913 REMARK 3 S21: -0.1041 S22: 0.0188 S23: 0.0043 REMARK 3 S31: -0.1764 S32: 0.1233 S33: 0.0774 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 15 D 239 REMARK 3 ORIGIN FOR THE GROUP (A): -22.529 5.491 30.453 REMARK 3 T TENSOR REMARK 3 T11: 0.0279 T22: 0.1469 REMARK 3 T33: 0.0541 T12: -0.0376 REMARK 3 T13: -0.0333 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: 1.7574 L22: 1.7343 REMARK 3 L33: 1.8135 L12: 0.1466 REMARK 3 L13: 0.6809 L23: 0.4525 REMARK 3 S TENSOR REMARK 3 S11: -0.1225 S12: 0.0210 S13: 0.1915 REMARK 3 S21: 0.0212 S22: 0.0569 S23: 0.0959 REMARK 3 S31: 0.0158 S32: -0.1567 S33: 0.0657 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8RYD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1292136501. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21945 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.66300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M SODIUM POTASSIUM PHOSPHATE, PH REMARK 280 6.9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 70.75000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.07500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 70.75000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.07500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 ASN A 4 REMARK 465 MET A 5 REMARK 465 ASP A 6 REMARK 465 LEU A 7 REMARK 465 THR A 8 REMARK 465 ILE A 9 REMARK 465 GLY A 10 REMARK 465 THR A 11 REMARK 465 HIS A 12 REMARK 465 ARG A 13 REMARK 465 GLU A 14 REMARK 465 SER A 15 REMARK 465 ALA A 241 REMARK 465 ASP A 242 REMARK 465 GLN A 243 REMARK 465 GLY A 244 REMARK 465 PHE A 245 REMARK 465 GLY A 246 REMARK 465 SER A 247 REMARK 465 SER A 248 REMARK 465 ALA A 249 REMARK 465 ALA A 250 REMARK 465 SER B 2 REMARK 465 GLN B 3 REMARK 465 ASN B 4 REMARK 465 MET B 5 REMARK 465 ASP B 6 REMARK 465 LEU B 7 REMARK 465 THR B 8 REMARK 465 ILE B 9 REMARK 465 GLY B 10 REMARK 465 THR B 11 REMARK 465 HIS B 12 REMARK 465 ARG B 13 REMARK 465 GLU B 14 REMARK 465 SER B 15 REMARK 465 GLY B 246 REMARK 465 SER B 247 REMARK 465 SER B 248 REMARK 465 ALA B 249 REMARK 465 ALA B 250 REMARK 465 SER C 2 REMARK 465 GLN C 3 REMARK 465 ASN C 4 REMARK 465 MET C 5 REMARK 465 ASP C 6 REMARK 465 LEU C 7 REMARK 465 THR C 8 REMARK 465 ILE C 9 REMARK 465 GLY C 10 REMARK 465 THR C 11 REMARK 465 HIS C 12 REMARK 465 ARG C 13 REMARK 465 GLU C 14 REMARK 465 SER C 15 REMARK 465 GLY C 246 REMARK 465 SER C 247 REMARK 465 SER C 248 REMARK 465 ALA C 249 REMARK 465 ALA C 250 REMARK 465 SER D 2 REMARK 465 GLN D 3 REMARK 465 ASN D 4 REMARK 465 MET D 5 REMARK 465 ASP D 6 REMARK 465 LEU D 7 REMARK 465 THR D 8 REMARK 465 ILE D 9 REMARK 465 GLY D 10 REMARK 465 THR D 11 REMARK 465 HIS D 12 REMARK 465 ARG D 13 REMARK 465 GLU D 14 REMARK 465 GLY D 240 REMARK 465 ALA D 241 REMARK 465 ASP D 242 REMARK 465 GLN D 243 REMARK 465 GLY D 244 REMARK 465 PHE D 245 REMARK 465 GLY D 246 REMARK 465 SER D 247 REMARK 465 SER D 248 REMARK 465 ALA D 249 REMARK 465 ALA D 250 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 66 -99.47 64.73 REMARK 500 LEU A 132 79.01 -113.75 REMARK 500 TYR B 66 -97.04 60.48 REMARK 500 GLU B 142 78.83 -114.94 REMARK 500 SER B 203 112.55 -163.19 REMARK 500 TYR C 66 -94.57 62.96 REMARK 500 GLU C 142 75.17 -116.20 REMARK 500 SER C 203 112.75 -160.38 REMARK 500 ASN C 228 -166.96 -101.91 REMARK 500 TYR D 66 -97.50 60.35 REMARK 500 ARG D 153 -79.49 -149.43 REMARK 500 REMARK 500 REMARK: NULL DBREF 8RYD A 2 250 UNP Q9HYR0 Q9HYR0_PSEAE 2 250 DBREF 8RYD B 2 250 UNP Q9HYR0 Q9HYR0_PSEAE 2 250 DBREF 8RYD C 2 250 UNP Q9HYR0 Q9HYR0_PSEAE 2 250 DBREF 8RYD D 2 250 UNP Q9HYR0 Q9HYR0_PSEAE 2 250 SEQRES 1 A 249 SER GLN ASN MET ASP LEU THR ILE GLY THR HIS ARG GLU SEQRES 2 A 249 SER ALA PHE TYR GLU LEU GLU PHE GLY PRO ARG THR ILE SEQRES 3 A 249 MET THR LEU ALA ASN PHE PRO ASP ASP VAL LEU PRO LEU SEQRES 4 A 249 LEU GLN MET GLU SER LEU MET THR PHE GLU ALA MET ALA SEQRES 5 A 249 TYR LEU ARG CYS ASP ALA LEU VAL GLU LEU GLY CYS TYR SEQRES 6 A 249 ASP GLY ARG ALA LEU GLU ILE ALA ARG LEU LEU ASN ALA SEQRES 7 A 249 ARG TYR LEU GLY VAL ASP LEU ASP GLN ARG ALA ILE GLU SEQRES 8 A 249 THR LEU ARG THR ARG ILE GLU ARG GLU GLY MET SER ASP SEQRES 9 A 249 ARG ALA ASP THR VAL VAL ASP ASP ILE LEU ASN HIS THR SEQRES 10 A 249 ARG ARG GLY ALA SER VAL GLY SER ARG ALA LEU TYR LEU SEQRES 11 A 249 LEU PRO PHE ASN LEU LEU GLY ASN PHE ARG GLU PRO LYS SEQRES 12 A 249 ARG LEU LEU ASP SER LEU ALA GLU ARG SER VAL ALA ALA SEQRES 13 A 249 VAL VAL SER VAL PHE GLY ASP SER ALA GLU ALA THR ARG SEQRES 14 A 249 VAL ARG GLN SER TYR TYR ARG ARG CYS GLY VAL GLN GLY SEQRES 15 A 249 LEU GLU LEU HIS THR ARG ASP ASP GLY THR VAL PHE THR SEQRES 16 A 249 GLY SER ASP GLY PHE TYR SER ARG SER TYR SER ARG ALA SEQRES 17 A 249 CYS LEU HIS ALA LEU LEU ALA GLU CYS GLY LEU THR VAL SEQRES 18 A 249 VAL ARG SER ALA SER ASN LEU PHE ALA HIS CYS VAL THR SEQRES 19 A 249 VAL LEU PRO GLU GLY ALA ASP GLN GLY PHE GLY SER SER SEQRES 20 A 249 ALA ALA SEQRES 1 B 249 SER GLN ASN MET ASP LEU THR ILE GLY THR HIS ARG GLU SEQRES 2 B 249 SER ALA PHE TYR GLU LEU GLU PHE GLY PRO ARG THR ILE SEQRES 3 B 249 MET THR LEU ALA ASN PHE PRO ASP ASP VAL LEU PRO LEU SEQRES 4 B 249 LEU GLN MET GLU SER LEU MET THR PHE GLU ALA MET ALA SEQRES 5 B 249 TYR LEU ARG CYS ASP ALA LEU VAL GLU LEU GLY CYS TYR SEQRES 6 B 249 ASP GLY ARG ALA LEU GLU ILE ALA ARG LEU LEU ASN ALA SEQRES 7 B 249 ARG TYR LEU GLY VAL ASP LEU ASP GLN ARG ALA ILE GLU SEQRES 8 B 249 THR LEU ARG THR ARG ILE GLU ARG GLU GLY MET SER ASP SEQRES 9 B 249 ARG ALA ASP THR VAL VAL ASP ASP ILE LEU ASN HIS THR SEQRES 10 B 249 ARG ARG GLY ALA SER VAL GLY SER ARG ALA LEU TYR LEU SEQRES 11 B 249 LEU PRO PHE ASN LEU LEU GLY ASN PHE ARG GLU PRO LYS SEQRES 12 B 249 ARG LEU LEU ASP SER LEU ALA GLU ARG SER VAL ALA ALA SEQRES 13 B 249 VAL VAL SER VAL PHE GLY ASP SER ALA GLU ALA THR ARG SEQRES 14 B 249 VAL ARG GLN SER TYR TYR ARG ARG CYS GLY VAL GLN GLY SEQRES 15 B 249 LEU GLU LEU HIS THR ARG ASP ASP GLY THR VAL PHE THR SEQRES 16 B 249 GLY SER ASP GLY PHE TYR SER ARG SER TYR SER ARG ALA SEQRES 17 B 249 CYS LEU HIS ALA LEU LEU ALA GLU CYS GLY LEU THR VAL SEQRES 18 B 249 VAL ARG SER ALA SER ASN LEU PHE ALA HIS CYS VAL THR SEQRES 19 B 249 VAL LEU PRO GLU GLY ALA ASP GLN GLY PHE GLY SER SER SEQRES 20 B 249 ALA ALA SEQRES 1 C 249 SER GLN ASN MET ASP LEU THR ILE GLY THR HIS ARG GLU SEQRES 2 C 249 SER ALA PHE TYR GLU LEU GLU PHE GLY PRO ARG THR ILE SEQRES 3 C 249 MET THR LEU ALA ASN PHE PRO ASP ASP VAL LEU PRO LEU SEQRES 4 C 249 LEU GLN MET GLU SER LEU MET THR PHE GLU ALA MET ALA SEQRES 5 C 249 TYR LEU ARG CYS ASP ALA LEU VAL GLU LEU GLY CYS TYR SEQRES 6 C 249 ASP GLY ARG ALA LEU GLU ILE ALA ARG LEU LEU ASN ALA SEQRES 7 C 249 ARG TYR LEU GLY VAL ASP LEU ASP GLN ARG ALA ILE GLU SEQRES 8 C 249 THR LEU ARG THR ARG ILE GLU ARG GLU GLY MET SER ASP SEQRES 9 C 249 ARG ALA ASP THR VAL VAL ASP ASP ILE LEU ASN HIS THR SEQRES 10 C 249 ARG ARG GLY ALA SER VAL GLY SER ARG ALA LEU TYR LEU SEQRES 11 C 249 LEU PRO PHE ASN LEU LEU GLY ASN PHE ARG GLU PRO LYS SEQRES 12 C 249 ARG LEU LEU ASP SER LEU ALA GLU ARG SER VAL ALA ALA SEQRES 13 C 249 VAL VAL SER VAL PHE GLY ASP SER ALA GLU ALA THR ARG SEQRES 14 C 249 VAL ARG GLN SER TYR TYR ARG ARG CYS GLY VAL GLN GLY SEQRES 15 C 249 LEU GLU LEU HIS THR ARG ASP ASP GLY THR VAL PHE THR SEQRES 16 C 249 GLY SER ASP GLY PHE TYR SER ARG SER TYR SER ARG ALA SEQRES 17 C 249 CYS LEU HIS ALA LEU LEU ALA GLU CYS GLY LEU THR VAL SEQRES 18 C 249 VAL ARG SER ALA SER ASN LEU PHE ALA HIS CYS VAL THR SEQRES 19 C 249 VAL LEU PRO GLU GLY ALA ASP GLN GLY PHE GLY SER SER SEQRES 20 C 249 ALA ALA SEQRES 1 D 249 SER GLN ASN MET ASP LEU THR ILE GLY THR HIS ARG GLU SEQRES 2 D 249 SER ALA PHE TYR GLU LEU GLU PHE GLY PRO ARG THR ILE SEQRES 3 D 249 MET THR LEU ALA ASN PHE PRO ASP ASP VAL LEU PRO LEU SEQRES 4 D 249 LEU GLN MET GLU SER LEU MET THR PHE GLU ALA MET ALA SEQRES 5 D 249 TYR LEU ARG CYS ASP ALA LEU VAL GLU LEU GLY CYS TYR SEQRES 6 D 249 ASP GLY ARG ALA LEU GLU ILE ALA ARG LEU LEU ASN ALA SEQRES 7 D 249 ARG TYR LEU GLY VAL ASP LEU ASP GLN ARG ALA ILE GLU SEQRES 8 D 249 THR LEU ARG THR ARG ILE GLU ARG GLU GLY MET SER ASP SEQRES 9 D 249 ARG ALA ASP THR VAL VAL ASP ASP ILE LEU ASN HIS THR SEQRES 10 D 249 ARG ARG GLY ALA SER VAL GLY SER ARG ALA LEU TYR LEU SEQRES 11 D 249 LEU PRO PHE ASN LEU LEU GLY ASN PHE ARG GLU PRO LYS SEQRES 12 D 249 ARG LEU LEU ASP SER LEU ALA GLU ARG SER VAL ALA ALA SEQRES 13 D 249 VAL VAL SER VAL PHE GLY ASP SER ALA GLU ALA THR ARG SEQRES 14 D 249 VAL ARG GLN SER TYR TYR ARG ARG CYS GLY VAL GLN GLY SEQRES 15 D 249 LEU GLU LEU HIS THR ARG ASP ASP GLY THR VAL PHE THR SEQRES 16 D 249 GLY SER ASP GLY PHE TYR SER ARG SER TYR SER ARG ALA SEQRES 17 D 249 CYS LEU HIS ALA LEU LEU ALA GLU CYS GLY LEU THR VAL SEQRES 18 D 249 VAL ARG SER ALA SER ASN LEU PHE ALA HIS CYS VAL THR SEQRES 19 D 249 VAL LEU PRO GLU GLY ALA ASP GLN GLY PHE GLY SER SER SEQRES 20 D 249 ALA ALA HET SAH A 901 26 HET SAH B 901 26 HET SAH C 901 26 HET SAH D 901 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 5 SAH 4(C14 H20 N6 O5 S) FORMUL 9 HOH *14(H2 O) HELIX 1 AA1 ALA A 16 LEU A 20 5 5 HELIX 2 AA2 PHE A 22 THR A 29 1 8 HELIX 3 AA3 LEU A 30 PHE A 33 5 4 HELIX 4 AA4 PRO A 34 ASP A 36 5 3 HELIX 5 AA5 VAL A 37 LEU A 55 1 19 HELIX 6 AA6 ALA A 70 LEU A 77 1 8 HELIX 7 AA7 ASP A 87 GLY A 102 1 16 HELIX 8 AA8 ASP A 113 GLY A 121 1 9 HELIX 9 AA9 LEU A 136 PHE A 140 5 5 HELIX 10 AB1 PRO A 143 SER A 154 1 12 HELIX 11 AB2 SER A 165 GLY A 180 1 16 HELIX 12 AB3 SER A 207 CYS A 218 1 12 HELIX 13 AB4 ALA B 16 LEU B 20 5 5 HELIX 14 AB5 PHE B 22 THR B 29 1 8 HELIX 15 AB6 LEU B 30 PHE B 33 5 4 HELIX 16 AB7 VAL B 37 LEU B 55 1 19 HELIX 17 AB8 ALA B 70 LEU B 77 1 8 HELIX 18 AB9 ASP B 87 GLU B 101 1 15 HELIX 19 AC1 ASP B 113 GLY B 121 1 9 HELIX 20 AC2 LEU B 136 PHE B 140 5 5 HELIX 21 AC3 PRO B 143 SER B 154 1 12 HELIX 22 AC4 SER B 165 GLY B 180 1 16 HELIX 23 AC5 SER B 207 CYS B 218 1 12 HELIX 24 AC6 PHE C 22 THR C 29 1 8 HELIX 25 AC7 LEU C 30 PHE C 33 5 4 HELIX 26 AC8 PRO C 34 ASP C 36 5 3 HELIX 27 AC9 VAL C 37 LEU C 55 1 19 HELIX 28 AD1 ALA C 70 LEU C 77 1 8 HELIX 29 AD2 ASP C 87 GLU C 101 1 15 HELIX 30 AD3 ASP C 113 GLY C 121 1 9 HELIX 31 AD4 LEU C 136 PHE C 140 5 5 HELIX 32 AD5 PRO C 143 SER C 154 1 12 HELIX 33 AD6 SER C 165 GLY C 180 1 16 HELIX 34 AD7 SER C 207 CYS C 218 1 12 HELIX 35 AD8 ALA D 16 LEU D 20 5 5 HELIX 36 AD9 PHE D 22 THR D 29 1 8 HELIX 37 AE1 LEU D 30 PHE D 33 5 4 HELIX 38 AE2 PRO D 34 ASP D 36 5 3 HELIX 39 AE3 VAL D 37 LEU D 55 1 19 HELIX 40 AE4 ALA D 70 ASN D 78 1 9 HELIX 41 AE5 ASP D 87 GLU D 101 1 15 HELIX 42 AE6 ASP D 113 GLY D 121 1 9 HELIX 43 AE7 LEU D 136 PHE D 140 5 5 HELIX 44 AE8 PRO D 143 GLU D 152 1 10 HELIX 45 AE9 SER D 165 GLY D 180 1 16 HELIX 46 AF1 SER D 207 CYS D 218 1 12 SHEET 1 AA1 7 ALA A 107 VAL A 111 0 SHEET 2 AA1 7 ARG A 80 ASP A 85 1 N GLY A 83 O VAL A 110 SHEET 3 AA1 7 ALA A 59 LEU A 63 1 N GLU A 62 O VAL A 84 SHEET 4 AA1 7 ALA A 128 LEU A 132 1 O LEU A 129 N VAL A 61 SHEET 5 AA1 7 ALA A 157 PHE A 162 1 O VAL A 158 N LEU A 132 SHEET 6 AA1 7 ALA A 231 PRO A 238 -1 O HIS A 232 N VAL A 161 SHEET 7 AA1 7 LEU A 220 SER A 227 -1 N ALA A 226 O CYS A 233 SHEET 1 AA2 3 GLU A 185 THR A 188 0 SHEET 2 AA2 3 THR A 193 THR A 196 -1 O VAL A 194 N HIS A 187 SHEET 3 AA2 3 TYR A 202 ARG A 204 -1 O SER A 203 N PHE A 195 SHEET 1 AA3 7 ALA B 107 VAL B 110 0 SHEET 2 AA3 7 ARG B 80 VAL B 84 1 N GLY B 83 O VAL B 110 SHEET 3 AA3 7 ALA B 59 LEU B 63 1 N GLU B 62 O VAL B 84 SHEET 4 AA3 7 ALA B 128 LEU B 132 1 O LEU B 129 N VAL B 61 SHEET 5 AA3 7 ALA B 156 PHE B 162 1 O VAL B 158 N LEU B 132 SHEET 6 AA3 7 ALA B 231 PRO B 238 -1 O HIS B 232 N VAL B 161 SHEET 7 AA3 7 LEU B 220 SER B 227 -1 N ALA B 226 O CYS B 233 SHEET 1 AA4 3 GLU B 185 THR B 188 0 SHEET 2 AA4 3 THR B 193 THR B 196 -1 O VAL B 194 N HIS B 187 SHEET 3 AA4 3 TYR B 202 ARG B 204 -1 O SER B 203 N PHE B 195 SHEET 1 AA5 7 ALA C 107 VAL C 111 0 SHEET 2 AA5 7 ARG C 80 ASP C 85 1 N GLY C 83 O VAL C 110 SHEET 3 AA5 7 ALA C 59 LEU C 63 1 N GLU C 62 O VAL C 84 SHEET 4 AA5 7 ALA C 128 LEU C 132 1 O LEU C 131 N LEU C 63 SHEET 5 AA5 7 ALA C 156 PHE C 162 1 O VAL C 158 N LEU C 132 SHEET 6 AA5 7 ALA C 231 PRO C 238 -1 O VAL C 236 N ALA C 157 SHEET 7 AA5 7 LEU C 220 SER C 227 -1 N ALA C 226 O CYS C 233 SHEET 1 AA6 3 GLU C 185 THR C 188 0 SHEET 2 AA6 3 THR C 193 THR C 196 -1 O VAL C 194 N HIS C 187 SHEET 3 AA6 3 TYR C 202 ARG C 204 -1 O SER C 203 N PHE C 195 SHEET 1 AA7 7 ALA D 107 VAL D 111 0 SHEET 2 AA7 7 ARG D 80 ASP D 85 1 N GLY D 83 O VAL D 110 SHEET 3 AA7 7 ALA D 59 LEU D 63 1 N GLU D 62 O VAL D 84 SHEET 4 AA7 7 ALA D 128 LEU D 132 1 O LEU D 129 N VAL D 61 SHEET 5 AA7 7 ALA D 156 PHE D 162 1 O VAL D 158 N LEU D 132 SHEET 6 AA7 7 ALA D 231 PRO D 238 -1 O VAL D 236 N ALA D 157 SHEET 7 AA7 7 LEU D 220 SER D 227 -1 N VAL D 223 O THR D 235 SHEET 1 AA8 3 GLU D 185 THR D 188 0 SHEET 2 AA8 3 THR D 193 THR D 196 -1 O VAL D 194 N HIS D 187 SHEET 3 AA8 3 TYR D 202 ARG D 204 -1 O SER D 203 N PHE D 195 CRYST1 141.500 84.150 94.340 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007067 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011884 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010600 0.00000