HEADER CYTOKINE 09-FEB-24 8RYK TITLE IL-1BETA IN COMPLEX WITH MACROCYCLIC PEPTIDE HIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-1 BETA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FAB LIGHT-CHAIN; COMPND 5 SYNONYM: IL-1 BETA,CATABOLIN; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: MATURE HUMAN INTERLEUKIN-1BETA; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: MACROCYCLIC PEPTIDE; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IL1B, IL1F2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS PEPTIDE DISCOVERY PLATFORM, CYTOKINE EXPDTA X-RAY DIFFRACTION AUTHOR J.-M.RONDEAU,S.LEHMANN REVDAT 2 05-JUN-24 8RYK 1 JRNL REVDAT 1 22-MAY-24 8RYK 0 JRNL AUTH A.VULPETTI,J.M.RONDEAU,M.H.BELLANCE,J.BLANK,R.BOESCH, JRNL AUTH 2 A.BOETTCHER,F.BORNANCIN,S.BUHR,L.E.CONNOR,C.E.DUMELIN, JRNL AUTH 3 O.ESSER,M.HEDIGER,S.HINTERMANN,U.HOMMEL,E.KOCH,G.LAPOINTE, JRNL AUTH 4 L.LEDER,S.LEHMANN,P.LEHR,P.MEIER,L.MULLER,D.OSTERMEIER, JRNL AUTH 5 P.RAMAGE,S.SCHIEBEL-HADDAD,A.B.SMITH,A.STOJANOVIC, JRNL AUTH 6 J.VELCICKY,R.YAMAMOTO,K.HURTH JRNL TITL LIGANDABILITY ASSESSMENT OF IL-1 BETA BY INTEGRATED HIT JRNL TITL 2 IDENTIFICATION APPROACHES. JRNL REF J.MED.CHEM. V. 67 8141 2024 JRNL REFN ISSN 0022-2623 JRNL PMID 38728572 JRNL DOI 10.1021/ACS.JMEDCHEM.4C00240 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH U.HOMMEL,K.HURTH,J.M.RONDEAU,A.VULPETTI,D.OSTERMEIER, REMARK 1 AUTH 2 A.BOETTCHER,J.P.BRADY,M.HEDIGER,S.LEHMANN,E.KOCH, REMARK 1 AUTH 3 A.BLECHSCHMIDT,R.YAMAMOTO,V.TUNDO DOTTORELLO, REMARK 1 AUTH 4 S.HAENNI-HOLZINGER,C.KAISER,P.LEHR,A.LINGEL,L.MUREDDU, REMARK 1 AUTH 5 C.SCHLEBERGER,J.BLANK,P.RAMAGE,F.FREULER,J.EDER,F.BORNANCIN REMARK 1 TITL DISCOVERY OF A SELECTIVE AND BIOLOGICALLY ACTIVE REMARK 1 TITL 2 LOW-MOLECULAR WEIGHT ANTAGONIST OF HUMAN INTERLEUKIN-1BETA. REMARK 1 REF NAT COMMUN V. 14 5497 2023 REMARK 1 REFN ESSN 2041-1723 REMARK 1 PMID 37679328 REMARK 1 DOI 10.1038/S41467-023-41190-0 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 30168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1509 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 604 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2248 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 574 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE : 0.2563 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.97 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2727 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31470 REMARK 3 B22 (A**2) : -2.10310 REMARK 3 B33 (A**2) : 1.78840 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.280 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.155 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.141 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.149 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.138 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2797 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3778 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 952 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 471 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2797 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 337 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3135 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.23 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.06 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.56 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 22.7376 -5.1545 -6.1266 REMARK 3 T TENSOR REMARK 3 T11: -0.2134 T22: 0.1240 REMARK 3 T33: -0.0753 T12: 0.0287 REMARK 3 T13: 0.0078 T23: 0.0477 REMARK 3 L TENSOR REMARK 3 L11: 2.4927 L22: 1.5215 REMARK 3 L33: 1.9364 L12: -0.2071 REMARK 3 L13: -0.2745 L23: 0.5741 REMARK 3 S TENSOR REMARK 3 S11: -0.1249 S12: -0.2851 S13: -0.1434 REMARK 3 S21: 0.1250 S22: 0.1268 S23: 0.0994 REMARK 3 S31: 0.0586 S32: 0.0411 S33: -0.0020 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 51.9986 5.9057 -7.4989 REMARK 3 T TENSOR REMARK 3 T11: -0.2249 T22: 0.1459 REMARK 3 T33: -0.0495 T12: 0.0107 REMARK 3 T13: 0.0046 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 3.3667 L22: 1.1400 REMARK 3 L33: 2.0681 L12: 0.8912 REMARK 3 L13: 0.8713 L23: 0.0856 REMARK 3 S TENSOR REMARK 3 S11: -0.1312 S12: 0.3819 S13: -0.0542 REMARK 3 S21: -0.0717 S22: -0.0424 S23: -0.0412 REMARK 3 S31: -0.0495 S32: 0.1908 S33: 0.1736 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8RYK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1292136519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000040 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS OCT. 15, 2015 REMARK 200 DATA SCALING SOFTWARE : XSCALE OCT. 15, 2015 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30169 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 51.601 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 1.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CITRATE PH 5.0, 1.6M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.38850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.10950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.69700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.10950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.38850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.69700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS C 17 REMARK 465 NH2 C 18 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP C 3 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 TRP C 13 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 ASP D 3 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 75 -105.64 58.43 REMARK 500 PHE A 117 78.12 -117.68 REMARK 500 ASP B 75 -105.03 58.74 REMARK 500 PHE B 117 78.33 -118.54 REMARK 500 REMARK 500 REMARK: NULL DBREF 8RYK A 1 153 UNP P01584 IL1B_HUMAN 117 269 DBREF 8RYK B 1 153 UNP P01584 IL1B_HUMAN 117 269 DBREF 8RYK C 2 18 PDB 8RYK 8RYK 2 18 DBREF 8RYK D 1 17 PDB 8RYK 8RYK 1 17 SEQRES 1 A 153 ALA PRO VAL ARG SER LEU ASN CYS THR LEU ARG ASP SER SEQRES 2 A 153 GLN GLN LYS SER LEU VAL MET SER GLY PRO TYR GLU LEU SEQRES 3 A 153 LYS ALA LEU HIS LEU GLN GLY GLN ASP MET GLU GLN GLN SEQRES 4 A 153 VAL VAL PHE SER MET SER PHE VAL GLN GLY GLU GLU SER SEQRES 5 A 153 ASN ASP LYS ILE PRO VAL ALA LEU GLY LEU LYS GLU LYS SEQRES 6 A 153 ASN LEU TYR LEU SER CYS VAL LEU LYS ASP ASP LYS PRO SEQRES 7 A 153 THR LEU GLN LEU GLU SER VAL ASP PRO LYS ASN TYR PRO SEQRES 8 A 153 LYS LYS LYS MET GLU LYS ARG PHE VAL PHE ASN LYS ILE SEQRES 9 A 153 GLU ILE ASN ASN LYS LEU GLU PHE GLU SER ALA GLN PHE SEQRES 10 A 153 PRO ASN TRP TYR ILE SER THR SER GLN ALA GLU ASN MET SEQRES 11 A 153 PRO VAL PHE LEU GLY GLY THR LYS GLY GLY GLN ASP ILE SEQRES 12 A 153 THR ASP PHE THR MET GLN PHE VAL SER SER SEQRES 1 B 153 ALA PRO VAL ARG SER LEU ASN CYS THR LEU ARG ASP SER SEQRES 2 B 153 GLN GLN LYS SER LEU VAL MET SER GLY PRO TYR GLU LEU SEQRES 3 B 153 LYS ALA LEU HIS LEU GLN GLY GLN ASP MET GLU GLN GLN SEQRES 4 B 153 VAL VAL PHE SER MET SER PHE VAL GLN GLY GLU GLU SER SEQRES 5 B 153 ASN ASP LYS ILE PRO VAL ALA LEU GLY LEU LYS GLU LYS SEQRES 6 B 153 ASN LEU TYR LEU SER CYS VAL LEU LYS ASP ASP LYS PRO SEQRES 7 B 153 THR LEU GLN LEU GLU SER VAL ASP PRO LYS ASN TYR PRO SEQRES 8 B 153 LYS LYS LYS MET GLU LYS ARG PHE VAL PHE ASN LYS ILE SEQRES 9 B 153 GLU ILE ASN ASN LYS LEU GLU PHE GLU SER ALA GLN PHE SEQRES 10 B 153 PRO ASN TRP TYR ILE SER THR SER GLN ALA GLU ASN MET SEQRES 11 B 153 PRO VAL PHE LEU GLY GLY THR LYS GLY GLY GLN ASP ILE SEQRES 12 B 153 THR ASP PHE THR MET GLN PHE VAL SER SER SEQRES 1 C 17 PHE TRP ASP SER TRP GLY TYR TRP TYR GLY PRO TRP ASP SEQRES 2 C 17 CCS GLY LYS NH2 SEQRES 1 D 17 PHE TRP ASP SER TRP GLY TYR TRP TYR GLY PRO TRP ASP SEQRES 2 D 17 CCS GLY LYS NH2 HET CCS C 15 9 HET CCS D 14 9 HET NH2 D 17 1 HETNAM CCS CARBOXYMETHYLATED CYSTEINE HETNAM NH2 AMINO GROUP FORMUL 3 CCS 2(C5 H9 N O4 S) FORMUL 4 NH2 H2 N FORMUL 5 HOH *185(H2 O) HELIX 1 AA1 ASP A 35 GLN A 39 5 5 HELIX 2 AA2 LYS A 63 LYS A 65 5 3 HELIX 3 AA3 GLU A 96 PHE A 99 5 4 HELIX 4 AA4 GLN B 32 GLN B 39 5 8 HELIX 5 AA5 LYS B 63 LYS B 65 5 3 HELIX 6 AA6 GLU B 96 PHE B 99 5 4 SHEET 1 AA1 6 LYS A 77 SER A 84 0 SHEET 2 AA1 6 LEU A 67 LYS A 74 -1 N SER A 70 O GLN A 81 SHEET 3 AA1 6 LYS A 55 LEU A 62 -1 N LEU A 62 O LEU A 67 SHEET 4 AA1 6 PHE A 42 PHE A 46 -1 N SER A 43 O GLY A 61 SHEET 5 AA1 6 ARG A 4 ASP A 12 -1 N LEU A 6 O MET A 44 SHEET 6 AA1 6 TRP C 9 TYR C 10 -1 O TRP C 9 N SER A 5 SHEET 1 AA2 8 LYS A 77 SER A 84 0 SHEET 2 AA2 8 LEU A 67 LYS A 74 -1 N SER A 70 O GLN A 81 SHEET 3 AA2 8 LYS A 55 LEU A 62 -1 N LEU A 62 O LEU A 67 SHEET 4 AA2 8 PHE A 101 ILE A 106 -1 O PHE A 101 N VAL A 58 SHEET 5 AA2 8 LYS A 109 SER A 114 -1 O GLU A 113 N ASN A 102 SHEET 6 AA2 8 PHE A 146 PHE A 150 -1 O PHE A 146 N LEU A 110 SHEET 7 AA2 8 ARG A 4 ASP A 12 -1 N ARG A 11 O THR A 147 SHEET 8 AA2 8 TRP C 9 TYR C 10 -1 O TRP C 9 N SER A 5 SHEET 1 AA3 3 SER A 17 MET A 20 0 SHEET 2 AA3 3 LEU A 26 LEU A 29 -1 O LYS A 27 N VAL A 19 SHEET 3 AA3 3 MET A 130 PRO A 131 -1 O MET A 130 N ALA A 28 SHEET 1 AA4 2 TYR A 121 SER A 123 0 SHEET 2 AA4 2 PHE A 133 GLY A 135 -1 O PHE A 133 N SER A 123 SHEET 1 AA5 6 LYS B 77 SER B 84 0 SHEET 2 AA5 6 LEU B 67 LYS B 74 -1 N SER B 70 O GLN B 81 SHEET 3 AA5 6 LYS B 55 LEU B 62 -1 N LEU B 62 O LEU B 67 SHEET 4 AA5 6 PHE B 42 PHE B 46 -1 N SER B 43 O GLY B 61 SHEET 5 AA5 6 ARG B 4 ASP B 12 -1 N LEU B 6 O MET B 44 SHEET 6 AA5 6 TRP D 8 TYR D 9 -1 O TRP D 8 N SER B 5 SHEET 1 AA6 8 LYS B 77 SER B 84 0 SHEET 2 AA6 8 LEU B 67 LYS B 74 -1 N SER B 70 O GLN B 81 SHEET 3 AA6 8 LYS B 55 LEU B 62 -1 N LEU B 62 O LEU B 67 SHEET 4 AA6 8 PHE B 101 ILE B 106 -1 O PHE B 101 N VAL B 58 SHEET 5 AA6 8 LYS B 109 SER B 114 -1 O GLU B 113 N ASN B 102 SHEET 6 AA6 8 PHE B 146 PHE B 150 -1 O PHE B 146 N LEU B 110 SHEET 7 AA6 8 ARG B 4 ASP B 12 -1 N ARG B 11 O THR B 147 SHEET 8 AA6 8 TRP D 8 TYR D 9 -1 O TRP D 8 N SER B 5 SHEET 1 AA7 3 SER B 17 MET B 20 0 SHEET 2 AA7 3 LEU B 26 LEU B 29 -1 O LYS B 27 N VAL B 19 SHEET 3 AA7 3 MET B 130 PRO B 131 -1 O MET B 130 N ALA B 28 SHEET 1 AA8 2 TYR B 121 SER B 123 0 SHEET 2 AA8 2 PHE B 133 GLY B 135 -1 O PHE B 133 N SER B 123 LINK N PHE C 2 CE CCS C 15 1555 1555 1.35 LINK C ASP C 14 N CCS C 15 1555 1555 1.36 LINK C CCS C 15 N GLY C 16 1555 1555 1.36 LINK N PHE D 1 CE CCS D 14 1555 1555 1.35 LINK C ASP D 13 N CCS D 14 1555 1555 1.36 LINK C CCS D 14 N GLY D 15 1555 1555 1.36 LINK C LYS D 16 N NH2 D 17 1555 1555 1.36 CISPEP 1 TYR A 90 PRO A 91 0 -3.33 CISPEP 2 TYR B 90 PRO B 91 0 -4.53 CRYST1 58.777 67.394 80.219 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017013 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014838 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012466 0.00000