HEADER IMMUNE SYSTEM 09-FEB-24 8RYP TITLE STRUCTURE OF S8 TCR IN COMPLEX WITH HLA-A*03:01 BOUND TO ELFSYLIEK TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HUMAN LEUKOCYTE ANTIGEN A,HLA-A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 21-119; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: ELFSYLIEK PEPTIDE; COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: TCR ALPHA; COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 5; COMPND 20 MOLECULE: TCR BETA; COMPND 21 CHAIN: E; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-A, HLAA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_TAXID: 9606; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 24 MOL_ID: 5; SOURCE 25 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 26 ORGANISM_TAXID: 9606; SOURCE 27 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TCR, HLA, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR V.KARUPPIAH REVDAT 1 04-SEP-24 8RYP 0 JRNL AUTH V.KARUPPIAH JRNL TITL STRUCTURE OF S8 TCR IN COMPLEX WITH HLA-A*03:01 BOUND TO JRNL TITL 2 ELFSYLIEK PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 121.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 99734 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 5073 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7309 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.3660 REMARK 3 BIN FREE R VALUE SET COUNT : 383 REMARK 3 BIN FREE R VALUE : 0.3850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6498 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 354 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.44000 REMARK 3 B22 (A**2) : 1.87000 REMARK 3 B33 (A**2) : -1.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.31000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.699 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6683 ; 0.002 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6042 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9070 ; 1.168 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13926 ; 1.083 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 810 ; 6.265 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 396 ;30.369 ;22.273 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1095 ;11.961 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;15.591 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 840 ; 0.038 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7691 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1637 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3246 ; 0.716 ; 0.996 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3245 ; 0.715 ; 0.995 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4045 ; 1.238 ; 1.486 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4046 ; 1.238 ; 1.487 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3437 ; 0.924 ; 1.085 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3435 ; 0.924 ; 1.083 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5022 ; 1.466 ; 1.594 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6938 ; 6.312 ;12.085 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6858 ; 6.288 ;11.459 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 276 REMARK 3 ORIGIN FOR THE GROUP (A): -26.5530 -1.4560 0.8240 REMARK 3 T TENSOR REMARK 3 T11: 0.4965 T22: 0.1284 REMARK 3 T33: 0.3230 T12: -0.0136 REMARK 3 T13: 0.0631 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 1.5493 L22: 1.1209 REMARK 3 L33: 2.3809 L12: 0.0062 REMARK 3 L13: 0.7222 L23: 0.0928 REMARK 3 S TENSOR REMARK 3 S11: 0.0238 S12: -0.4008 S13: 0.1041 REMARK 3 S21: 0.1550 S22: 0.0358 S23: 0.2296 REMARK 3 S31: 0.0556 S32: -0.3889 S33: -0.0596 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 101 REMARK 3 ORIGIN FOR THE GROUP (A): -10.4890 5.5120 8.7460 REMARK 3 T TENSOR REMARK 3 T11: 0.4338 T22: 0.0661 REMARK 3 T33: 0.2445 T12: 0.0118 REMARK 3 T13: 0.0644 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 3.5047 L22: 1.5573 REMARK 3 L33: 3.4059 L12: -0.0441 REMARK 3 L13: 1.6785 L23: -0.2252 REMARK 3 S TENSOR REMARK 3 S11: -0.0463 S12: -0.3535 S13: 0.1956 REMARK 3 S21: 0.1634 S22: 0.0271 S23: -0.0190 REMARK 3 S31: -0.0313 S32: 0.0737 S33: 0.0192 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 9 REMARK 3 ORIGIN FOR THE GROUP (A): -28.5880 -3.8560 -19.3930 REMARK 3 T TENSOR REMARK 3 T11: 0.3890 T22: 0.0469 REMARK 3 T33: 0.3297 T12: -0.0394 REMARK 3 T13: -0.0157 T23: 0.0520 REMARK 3 L TENSOR REMARK 3 L11: 2.2941 L22: 3.9698 REMARK 3 L33: 2.9133 L12: -1.0655 REMARK 3 L13: 0.8161 L23: 0.4849 REMARK 3 S TENSOR REMARK 3 S11: 0.0267 S12: 0.1521 S13: -0.1301 REMARK 3 S21: -0.0508 S22: -0.0033 S23: 0.2667 REMARK 3 S31: 0.1244 S32: 0.0968 S33: -0.0234 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 192 REMARK 3 ORIGIN FOR THE GROUP (A): -37.4230 -17.6600 -53.1080 REMARK 3 T TENSOR REMARK 3 T11: 0.5481 T22: 0.8496 REMARK 3 T33: 0.3093 T12: -0.0029 REMARK 3 T13: 0.0173 T23: -0.0585 REMARK 3 L TENSOR REMARK 3 L11: 1.0016 L22: 0.9757 REMARK 3 L33: 5.3296 L12: 0.4556 REMARK 3 L13: 1.8437 L23: 0.4507 REMARK 3 S TENSOR REMARK 3 S11: 0.0991 S12: 0.1767 S13: -0.0599 REMARK 3 S21: -0.0399 S22: -0.0730 S23: -0.0566 REMARK 3 S31: 0.3993 S32: -0.7634 S33: -0.0261 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 4 E 244 REMARK 3 ORIGIN FOR THE GROUP (A): -20.1170 -11.0800 -56.3570 REMARK 3 T TENSOR REMARK 3 T11: 0.5589 T22: 0.8795 REMARK 3 T33: 0.3653 T12: 0.0872 REMARK 3 T13: 0.0398 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 0.5535 L22: 0.5414 REMARK 3 L33: 6.4802 L12: 0.2771 REMARK 3 L13: 1.1220 L23: 0.6258 REMARK 3 S TENSOR REMARK 3 S11: 0.0318 S12: 0.6376 S13: -0.0410 REMARK 3 S21: -0.0657 S22: 0.1133 S23: -0.2222 REMARK 3 S31: 0.0970 S32: 0.8560 S33: -0.1451 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8RYP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1292136369. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9159 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104807 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 121.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 1.18200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MAGNESIUM ACETATE, 20 MM MOPS PH REMARK 280 7.2, 50 MM SODIUM CHLORIDE, 12 % W/V PEG 8000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 104.06000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.85500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 104.06000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.85500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER D 131 REMARK 465 SER D 132 REMARK 465 ASN D 193 REMARK 465 SER D 194 REMARK 465 ILE D 195 REMARK 465 ILE D 196 REMARK 465 PRO D 197 REMARK 465 GLU D 198 REMARK 465 ASP D 199 REMARK 465 THR D 200 REMARK 465 MET E 1 REMARK 465 ASP E 2 REMARK 465 SER E 3 REMARK 465 SER E 218 REMARK 465 GLU E 219 REMARK 465 THR E 224 REMARK 465 GLN E 225 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG E 227 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 17 38.49 -140.18 REMARK 500 ASP A 29 -124.82 52.05 REMARK 500 GLN A 224 74.30 -114.17 REMARK 500 LEU E 47 -64.22 -96.86 REMARK 500 PRO E 152 -165.62 -76.20 REMARK 500 ASP E 153 37.62 -89.32 REMARK 500 ALA E 228 -171.26 67.49 REMARK 500 PRO E 230 72.51 -62.48 REMARK 500 THR E 232 109.55 -56.53 REMARK 500 REMARK 500 REMARK: NULL DBREF 8RYP A 1 275 UNP P04439 HLAA_HUMAN 25 299 DBREF 8RYP B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 8RYP C 1 9 PDB 8RYP 8RYP 1 9 DBREF 8RYP D 1 200 PDB 8RYP 8RYP 1 200 DBREF 8RYP E 1 244 PDB 8RYP 8RYP 1 244 SEQADV 8RYP PRO A 276 UNP P04439 EXPRESSION TAG SEQADV 8RYP MET B 0 UNP P61769 INITIATING METHIONINE SEQRES 1 A 276 GLY SER HIS SER MET ARG TYR PHE PHE THR SER VAL SER SEQRES 2 A 276 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 A 276 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 276 ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP ILE SEQRES 5 A 276 GLU GLN GLU GLY PRO GLU TYR TRP ASP GLN GLU THR ARG SEQRES 6 A 276 ASN VAL LYS ALA GLN SER GLN THR ASP ARG VAL ASP LEU SEQRES 7 A 276 GLY THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 276 SER HIS THR ILE GLN ILE MET TYR GLY CYS ASP VAL GLY SEQRES 9 A 276 SER ASP GLY ARG PHE LEU ARG GLY TYR ARG GLN ASP ALA SEQRES 10 A 276 TYR ASP GLY LYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 276 ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN ILE THR SEQRES 12 A 276 LYS ARG LYS TRP GLU ALA ALA HIS GLU ALA GLU GLN LEU SEQRES 13 A 276 ARG ALA TYR LEU ASP GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 A 276 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG THR SEQRES 15 A 276 ASP PRO PRO LYS THR HIS MET THR HIS HIS PRO ILE SER SEQRES 16 A 276 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 276 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 A 276 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 A 276 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 276 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS HIS SEQRES 21 A 276 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 A 276 TRP GLU PRO SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 9 GLU LEU PHE SER TYR LEU ILE GLU LYS SEQRES 1 D 200 MET LYS GLN GLU VAL THR GLN ILE PRO ALA ALA LEU SER SEQRES 2 D 200 VAL PRO GLU GLY GLU ASN LEU VAL LEU ASN CYS SER PHE SEQRES 3 D 200 THR ASP SER ALA ILE TYR ASN LEU GLN TRP PHE ARG GLN SEQRES 4 D 200 ASP PRO GLY LYS GLY LEU THR SER LEU LEU LEU ILE GLN SEQRES 5 D 200 SER SER GLN ARG GLU GLN THR SER GLY ARG LEU ASN ALA SEQRES 6 D 200 SER LEU ASP LYS SER SER GLY ARG SER THR LEU TYR ILE SEQRES 7 D 200 ALA ALA SER GLN PRO GLY ASP SER ALA THR TYR LEU CYS SEQRES 8 D 200 ALA VAL ARG GLN ARG GLY SER GLN GLY ASN LEU ILE PHE SEQRES 9 D 200 GLY LYS GLY THR LYS LEU SER VAL LYS PRO ASN ILE GLN SEQRES 10 D 200 ASN PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SEQRES 11 D 200 SER SER ASP LYS SER VAL CYS LEU PHE THR ASP PHE ASP SEQRES 12 D 200 SER GLN THR ASN VAL SER GLN SER LYS ASP SER ASP VAL SEQRES 13 D 200 TYR ILE THR ASP LYS CYS VAL LEU ASP MET ARG SER MET SEQRES 14 D 200 ASP PHE LYS SER ASN SER ALA VAL ALA TRP SER ASN LYS SEQRES 15 D 200 SER ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SER ILE SEQRES 16 D 200 ILE PRO GLU ASP THR SEQRES 1 E 244 MET ASP SER GLY VAL THR GLN THR PRO LYS HIS LEU ILE SEQRES 2 E 244 THR ALA THR GLY GLN ARG VAL THR LEU ARG CYS SER PRO SEQRES 3 E 244 ARG SER GLY ASP LEU SER VAL TYR TRP TYR GLN GLN SER SEQRES 4 E 244 LEU ASP GLN GLY LEU GLN PHE LEU ILE GLN TYR TYR ASN SEQRES 5 E 244 GLY GLU GLU ARG ALA LYS GLY ASN ILE LEU GLU ARG PHE SEQRES 6 E 244 SER ALA GLN GLN PHE PRO ASP LEU HIS SER GLU LEU ASN SEQRES 7 E 244 LEU SER SER LEU GLU LEU GLY ASP SER ALA LEU TYR PHE SEQRES 8 E 244 CYS ALA SER SER PRO GLY GLY GLY HIS ASN GLU GLN PHE SEQRES 9 E 244 PHE GLY PRO GLY THR ARG LEU THR VAL LEU GLU ASP LEU SEQRES 10 E 244 LYS ASN VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SEQRES 11 E 244 SER GLU ALA GLU ILE SER HIS THR GLN LYS ALA THR LEU SEQRES 12 E 244 VAL CYS LEU ALA THR GLY PHE TYR PRO ASP HIS VAL GLU SEQRES 13 E 244 LEU SER TRP TRP VAL ASN GLY LYS GLU VAL HIS SER GLY SEQRES 14 E 244 VAL CYS THR ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA SEQRES 15 E 244 LEU ASN ASP SER ARG TYR ALA LEU SER SER ARG LEU ARG SEQRES 16 E 244 VAL SER ALA THR PHE TRP GLN ASP PRO ARG ASN HIS PHE SEQRES 17 E 244 ARG CYS GLN VAL GLN PHE TYR GLY LEU SER GLU ASN ASP SEQRES 18 E 244 GLU TRP THR GLN ASP ARG ALA LYS PRO VAL THR GLN ILE SEQRES 19 E 244 VAL SER ALA GLU ALA TRP GLY ARG ALA ASP HET EDO B 101 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 6 EDO C2 H6 O2 FORMUL 7 HOH *354(H2 O) HELIX 1 AA1 ALA A 49 GLU A 53 5 5 HELIX 2 AA2 GLY A 56 TYR A 85 1 30 HELIX 3 AA3 ASP A 137 ALA A 150 1 14 HELIX 4 AA4 HIS A 151 ASP A 161 1 11 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 GLN A 180 1 6 HELIX 7 AA7 GLU A 253 GLN A 255 5 3 HELIX 8 AA8 GLN D 82 SER D 86 5 5 HELIX 9 AA9 ARG D 167 ASP D 170 5 4 HELIX 10 AB1 GLU E 83 SER E 87 5 5 HELIX 11 AB2 SER E 131 GLN E 139 1 9 HELIX 12 AB3 ALA E 198 ASP E 203 1 6 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N VAL A 28 O THR A 31 SHEET 4 AA1 8 HIS A 3 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 AA1 8 THR A 94 VAL A 103 -1 O TYR A 99 N TYR A 7 SHEET 6 AA1 8 PHE A 109 TYR A 118 -1 O ALA A 117 N GLN A 96 SHEET 7 AA1 8 LYS A 121 LEU A 126 -1 O TYR A 123 N ASP A 116 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 PRO A 193 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA2 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 PRO A 193 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 ASP A 223 0 SHEET 2 AA4 4 THR A 214 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 AA4 4 TYR A 257 GLN A 262 -1 O HIS A 260 N THR A 216 SHEET 4 AA4 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O PHE B 70 N ASN B 21 SHEET 4 AA5 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O PHE B 70 N ASN B 21 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 GLU B 44 ARG B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA7 4 TYR B 78 ASN B 83 -1 O ARG B 81 N ASP B 38 SHEET 4 AA7 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 AA8 5 VAL D 5 ILE D 8 0 SHEET 2 AA8 5 LEU D 20 PHE D 26 -1 O SER D 25 N THR D 6 SHEET 3 AA8 5 ARG D 73 ILE D 78 -1 O SER D 74 N CYS D 24 SHEET 4 AA8 5 LEU D 63 ASP D 68 -1 N ASN D 64 O TYR D 77 SHEET 5 AA8 5 GLU D 57 SER D 60 -1 N SER D 60 O LEU D 63 SHEET 1 AA9 5 ALA D 11 PRO D 15 0 SHEET 2 AA9 5 THR D 108 LYS D 113 1 O LYS D 113 N VAL D 14 SHEET 3 AA9 5 ALA D 87 GLN D 95 -1 N ALA D 87 O LEU D 110 SHEET 4 AA9 5 ILE D 31 ASP D 40 -1 N GLN D 35 O ALA D 92 SHEET 5 AA9 5 GLY D 44 GLN D 52 -1 O ILE D 51 N LEU D 34 SHEET 1 AB1 4 ALA D 11 PRO D 15 0 SHEET 2 AB1 4 THR D 108 LYS D 113 1 O LYS D 113 N VAL D 14 SHEET 3 AB1 4 ALA D 87 GLN D 95 -1 N ALA D 87 O LEU D 110 SHEET 4 AB1 4 ILE D 103 PHE D 104 -1 O ILE D 103 N VAL D 93 SHEET 1 AB2 4 ALA D 122 ARG D 127 0 SHEET 2 AB2 4 SER D 135 THR D 140 -1 O LEU D 138 N TYR D 124 SHEET 3 AB2 4 PHE D 171 SER D 180 -1 O ALA D 178 N CYS D 137 SHEET 4 AB2 4 VAL D 156 ILE D 158 -1 N TYR D 157 O TRP D 179 SHEET 1 AB3 4 ALA D 122 ARG D 127 0 SHEET 2 AB3 4 SER D 135 THR D 140 -1 O LEU D 138 N TYR D 124 SHEET 3 AB3 4 PHE D 171 SER D 180 -1 O ALA D 178 N CYS D 137 SHEET 4 AB3 4 CYS D 162 MET D 166 -1 N MET D 166 O PHE D 171 SHEET 1 AB4 4 THR E 6 THR E 8 0 SHEET 2 AB4 4 VAL E 20 SER E 25 -1 O ARG E 23 N THR E 8 SHEET 3 AB4 4 SER E 75 LEU E 79 -1 O LEU E 77 N LEU E 22 SHEET 4 AB4 4 PHE E 65 GLN E 69 -1 N SER E 66 O ASN E 78 SHEET 1 AB5 6 HIS E 11 ALA E 15 0 SHEET 2 AB5 6 THR E 109 LEU E 114 1 O THR E 112 N LEU E 12 SHEET 3 AB5 6 ALA E 88 SER E 95 -1 N TYR E 90 O THR E 109 SHEET 4 AB5 6 SER E 32 SER E 39 -1 N TYR E 34 O ALA E 93 SHEET 5 AB5 6 GLY E 43 TYR E 51 -1 O TYR E 50 N VAL E 33 SHEET 6 AB5 6 GLU E 54 LYS E 58 -1 O GLU E 54 N TYR E 51 SHEET 1 AB6 4 HIS E 11 ALA E 15 0 SHEET 2 AB6 4 THR E 109 LEU E 114 1 O THR E 112 N LEU E 12 SHEET 3 AB6 4 ALA E 88 SER E 95 -1 N TYR E 90 O THR E 109 SHEET 4 AB6 4 PHE E 104 PHE E 105 -1 O PHE E 104 N SER E 94 SHEET 1 AB7 4 GLU E 124 PHE E 128 0 SHEET 2 AB7 4 LYS E 140 PHE E 150 -1 O VAL E 144 N PHE E 128 SHEET 3 AB7 4 TYR E 188 SER E 197 -1 O TYR E 188 N PHE E 150 SHEET 4 AB7 4 VAL E 170 THR E 172 -1 N CYS E 171 O ARG E 193 SHEET 1 AB8 4 GLU E 124 PHE E 128 0 SHEET 2 AB8 4 LYS E 140 PHE E 150 -1 O VAL E 144 N PHE E 128 SHEET 3 AB8 4 TYR E 188 SER E 197 -1 O TYR E 188 N PHE E 150 SHEET 4 AB8 4 LEU E 177 LYS E 178 -1 N LEU E 177 O ALA E 189 SHEET 1 AB9 4 LYS E 164 VAL E 166 0 SHEET 2 AB9 4 VAL E 155 VAL E 161 -1 N VAL E 161 O LYS E 164 SHEET 3 AB9 4 HIS E 207 PHE E 214 -1 O GLN E 211 N SER E 158 SHEET 4 AB9 4 GLN E 233 TRP E 240 -1 O GLN E 233 N PHE E 214 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.05 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.02 SSBOND 4 CYS D 24 CYS D 91 1555 1555 2.03 SSBOND 5 CYS D 137 CYS D 187 1555 1555 2.03 SSBOND 6 CYS D 162 CYS E 171 1555 1555 2.03 SSBOND 7 CYS E 24 CYS E 92 1555 1555 2.02 SSBOND 8 CYS E 145 CYS E 210 1555 1555 2.03 CISPEP 1 TYR A 209 PRO A 210 0 0.50 CISPEP 2 HIS B 31 PRO B 32 0 2.52 CISPEP 3 ILE D 8 PRO D 9 0 -8.48 CISPEP 4 THR E 8 PRO E 9 0 -5.91 CISPEP 5 TYR E 151 PRO E 152 0 -7.45 CRYST1 208.120 45.710 121.680 90.00 94.93 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004805 0.000000 0.000414 0.00000 SCALE2 0.000000 0.021877 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008249 0.00000