HEADER HYDROLASE 12-FEB-24 8RZA TITLE RIBONUCLEASE W COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE RIBONUCLEASE FAU-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FAU-1 PROTEIN,P.FURIOSUS AU-BINDING,RNA-BINDING PROTEIN AU- COMPND 5 1,RNA-BINDING PROTEIN FAU-1,RIBONUCLEASE W; COMPND 6 EC: 3.1.26.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA (5'-R(P*UP*UP*U)-3'); COMPND 10 CHAIN: R; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: RNA (5'-R(*UP*AP*U)-3'); COMPND 14 CHAIN: B; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 GENE: FAU-1, AUBA, PF0022; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 9 ORGANISM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 MOL_ID: 3; SOURCE 13 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 14 ORGANISM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNASE W, RIBONUCLEASE W, FAU-1, ARCHAEA, RIBOSOME BIOGENESIS, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.VAYSSIERES,M.BLAUD,N.LEULLIOT REVDAT 1 06-NOV-24 8RZA 0 JRNL AUTH M.VAYSSIERES,M.JUTTNER,K.HAAS,A.ANCELIN,A.MARCHFELDER, JRNL AUTH 2 N.LEULLIOT,S.FERREIRA-CERCA,M.BLAUD JRNL TITL RNASE W, A CONSERVED RIBONUCLEASE FAMILY WITH A NOVEL ACTIVE JRNL TITL 2 SITE. JRNL REF NUCLEIC ACIDS RES. 2024 JRNL REFN ESSN 1362-4962 JRNL PMID 39445822 JRNL DOI 10.1093/NAR/GKAE907 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 68 352 2012 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 46316 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2316 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6400 - 5.4000 0.99 2732 144 0.1747 0.1968 REMARK 3 2 5.3900 - 4.2800 1.00 2635 139 0.1542 0.1880 REMARK 3 3 4.2800 - 3.7400 1.00 2609 138 0.1830 0.2339 REMARK 3 4 3.7400 - 3.4000 1.00 2607 137 0.1977 0.2269 REMARK 3 5 3.4000 - 3.1600 1.00 2591 136 0.2358 0.2699 REMARK 3 6 3.1600 - 2.9700 1.00 2584 136 0.2568 0.2820 REMARK 3 7 2.9700 - 2.8200 1.00 2574 136 0.2573 0.2625 REMARK 3 8 2.8200 - 2.7000 1.00 2595 136 0.2898 0.3364 REMARK 3 9 2.7000 - 2.6000 1.00 2554 135 0.2794 0.3248 REMARK 3 10 2.6000 - 2.5100 1.00 2564 135 0.2580 0.2959 REMARK 3 11 2.5100 - 2.4300 1.00 2574 135 0.2565 0.2733 REMARK 3 12 2.4300 - 2.3600 1.00 2568 135 0.2559 0.3244 REMARK 3 13 2.3600 - 2.3000 1.00 2564 135 0.2621 0.2614 REMARK 3 14 2.3000 - 2.2400 1.00 2565 135 0.2557 0.2803 REMARK 3 15 2.2400 - 2.1900 1.00 2547 134 0.2833 0.2828 REMARK 3 16 2.1900 - 2.1400 1.00 2571 135 0.2915 0.2866 REMARK 3 17 2.1400 - 2.1000 1.00 2566 135 0.3024 0.3500 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.286 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.619 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3975 REMARK 3 ANGLE : 0.949 5382 REMARK 3 CHIRALITY : 0.066 597 REMARK 3 PLANARITY : 0.006 665 REMARK 3 DIHEDRAL : 16.211 1523 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8RZA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1292136547. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46329 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 45.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRISODIUM CITRATE, PEG 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, R, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, R, B REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 93.84000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 GLU A 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U R 3 C5' C4' O4' C3' O3' C2' O2' REMARK 470 U R 3 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U R 3 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 U R 1 P U R 1 OP3 -0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 57 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 57 -90.47 -116.92 REMARK 500 HIS A 59 28.11 47.79 REMARK 500 ILE A 80 -71.08 -105.10 REMARK 500 VAL A 141 -52.97 69.30 REMARK 500 GLU A 228 40.47 -95.51 REMARK 500 GLU A 422 -56.71 74.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 503 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 505 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 364 OD1 REMARK 620 2 ASP A 437 OD2 112.6 REMARK 620 3 U B 3 OP2 106.3 87.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 506 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 404 OD1 REMARK 620 2 ASP A 420 OD1 88.5 REMARK 620 3 ASP A 424 OD1 94.8 164.2 REMARK 620 4 HOH A 604 O 109.5 94.8 69.5 REMARK 620 5 U B 3 O5' 87.4 100.9 94.7 157.3 REMARK 620 N 1 2 3 4 DBREF 8RZA A 1 469 UNP Q8U4Q7 FAU1_PYRFU 1 469 DBREF 8RZA R 1 3 PDB 8RZA 8RZA 1 3 DBREF 8RZA B 1 3 PDB 8RZA 8RZA 1 3 SEQRES 1 A 469 MET SER THR GLU SER GLU ILE ALA VAL ARG ILE ARG GLY SEQRES 2 A 469 ILE TYR SER THR ALA LEU THR LYS LEU LEU MET ASP ARG SEQRES 3 A 469 GLY PHE LYS ILE VAL GLN PRO SER ASP VAL ILE ALA GLU SEQRES 4 A 469 ARG PHE GLY ILE GLU LYS SER TYR GLU ASP PHE ASP VAL SEQRES 5 A 469 ASP ILE TYR ASP LYS ASN HIS GLY VAL THR ILE VAL GLY SEQRES 6 A 469 THR LYS VAL GLU ALA VAL LYS LYS VAL PHE GLU GLU GLU SEQRES 7 A 469 PHE ILE ASP VAL PHE PHE ARG LYS LEU PRO TYR LYS LEU SEQRES 8 A 469 HIS GLY ILE TYR LYS GLY LEU VAL VAL LYS ARG ASP ASP SEQRES 9 A 469 ARG PHE VAL TYR VAL ASP ILE GLY ASN VAL ILE GLY THR SEQRES 10 A 469 VAL LEU ILE GLU GLU LEU PRO ASP ALA ALA GLU GLY ASP SEQRES 11 A 469 GLU VAL VAL VAL GLN VAL LYS LYS HIS ASN VAL LEU PRO SEQRES 12 A 469 HIS LEU SER THR LEU ILE THR ILE PRO GLY ASP TYR ALA SEQRES 13 A 469 VAL LEU ILE PRO LYS PRO ILE GLY VAL GLN ARG HIS VAL SEQRES 14 A 469 LYS ILE SER ARG LYS ILE LYS ASP PRO GLU GLU ARG GLU SEQRES 15 A 469 ARG LEU ARG ILE LEU GLY LEU SER VAL ASP LEU GLY GLU SEQRES 16 A 469 TRP GLY VAL LEU TRP ARG THR ALA ALA ALA TYR LYS ASP SEQRES 17 A 469 TRP ASN THR LEU ARG ASP GLU LEU VAL ARG LEU SER LYS SEQRES 18 A 469 ILE ALA ASP LYS LEU LYS GLU ALA GLU LYS PHE SER ALA SEQRES 19 A 469 PRO ALA GLU ILE ILE GLU GLY ARG GLU ILE TYR GLU ILE SEQRES 20 A 469 GLU PHE GLY GLY GLY VAL LYS LYS LYS LEU ASP GLU ILE SEQRES 21 A 469 ARG ASN GLU VAL VAL PRO THR ILE GLU GLY HIS HIS GLN SEQRES 22 A 469 PHE LYS SER TYR ASP PRO GLU PHE THR LEU ALA VAL ASP SEQRES 23 A 469 VAL ALA GLU GLY ILE LEU ALA LYS LEU PRO SER GLN ARG SEQRES 24 A 469 GLN LYS ILE SER LYS GLY PHE LEU GLU ALA ILE ILE THR SEQRES 25 A 469 SER LYS GLY PRO LYS VAL GLY TRP ILE PHE THR LEU ASN SEQRES 26 A 469 HIS VAL LYS PRO ASP GLY GLN ILE ILE LYS ILE GLY PRO SEQRES 27 A 469 GLY GLU VAL ILE GLU VAL SER THR ASP PRO LEU LYS VAL SEQRES 28 A 469 THR ILE LYS ARG TYR LEU ARG PRO GLY LYS PHE TYR ASP SEQRES 29 A 469 GLY LEU GLU VAL PRO ILE GLU SER GLY ASP TYR ALA ILE SEQRES 30 A 469 THR GLU ILE GLU ALA GLY LYS TRP TRP PHE VAL HIS ARG SEQRES 31 A 469 TYR TYR ASP LYS ASP GLY ASN LEU LYS GLY GLU PHE TYR SEQRES 32 A 469 ASN ILE ASN THR PRO VAL GLU ILE TYR PRO ASP LYS ALA SEQRES 33 A 469 ARG TYR VAL ASP LEU GLU VAL ASP ILE VAL ARG TRP PRO SEQRES 34 A 469 ASP GLY LYS LYS GLU ILE ILE ASP LYS GLU LYS LEU LYS SEQRES 35 A 469 GLU HIS TYR GLU GLU GLY ILE ILE SER GLU LYS LEU TYR SEQRES 36 A 469 LYS ALA THR LEU ARG ILE ALA GLN GLU VAL TYR ASP ARG SEQRES 37 A 469 LEU SEQRES 1 R 3 U U U SEQRES 1 B 3 U A U HET PO4 A 501 5 HET PG4 A 502 13 HET PG4 A 503 10 HET PO4 A 504 5 HET MG A 505 1 HET MG A 506 1 HETNAM PO4 PHOSPHATE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM MG MAGNESIUM ION FORMUL 4 PO4 2(O4 P 3-) FORMUL 5 PG4 2(C8 H18 O5) FORMUL 8 MG 2(MG 2+) FORMUL 10 HOH *184(H2 O) HELIX 1 AA1 TYR A 15 ARG A 26 1 12 HELIX 2 AA2 SER A 34 GLY A 42 1 9 HELIX 3 AA3 LYS A 67 PHE A 79 1 13 HELIX 4 AA4 GLU A 121 LEU A 123 5 3 HELIX 5 AA5 ASP A 177 SER A 190 1 14 HELIX 6 AA6 THR A 202 ALA A 205 5 4 HELIX 7 AA7 ASP A 208 ASP A 224 1 17 HELIX 8 AA8 LYS A 225 PHE A 232 5 8 HELIX 9 AA9 GLY A 250 GLU A 263 1 14 HELIX 10 AB1 GLY A 270 LYS A 275 1 6 HELIX 11 AB2 ASP A 278 LEU A 295 1 18 HELIX 12 AB3 GLN A 298 GLY A 315 1 18 HELIX 13 AB4 ASP A 437 GLU A 447 1 11 HELIX 14 AB5 SER A 451 LEU A 469 1 19 SHEET 1 AA1 6 LYS A 29 ILE A 30 0 SHEET 2 AA1 6 ALA A 8 ILE A 11 1 N VAL A 9 O LYS A 29 SHEET 3 AA1 6 VAL A 52 ASP A 56 1 O ILE A 54 N ARG A 10 SHEET 4 AA1 6 GLY A 60 GLY A 65 -1 O THR A 62 N TYR A 55 SHEET 5 AA1 6 ILE A 244 PHE A 249 -1 O TYR A 245 N ILE A 63 SHEET 6 AA1 6 VAL A 82 LYS A 86 -1 N ARG A 85 O GLU A 246 SHEET 1 AA2 7 ALA A 236 ILE A 239 0 SHEET 2 AA2 7 ILE A 94 ARG A 102 -1 N LYS A 96 O ALA A 236 SHEET 3 AA2 7 GLU A 131 HIS A 139 -1 O VAL A 132 N GLY A 97 SHEET 4 AA2 7 PRO A 143 SER A 146 -1 O SER A 146 N GLN A 135 SHEET 5 AA2 7 ILE A 115 LEU A 119 1 N THR A 117 O LEU A 145 SHEET 6 AA2 7 PHE A 106 ASP A 110 -1 N VAL A 109 O GLY A 116 SHEET 7 AA2 7 ILE A 94 ARG A 102 -1 N LEU A 98 O ASP A 110 SHEET 1 AA3 4 ILE A 151 PRO A 152 0 SHEET 2 AA3 4 ALA A 156 PRO A 160 -1 O LEU A 158 N ILE A 151 SHEET 3 AA3 4 TRP A 196 TRP A 200 -1 O GLY A 197 N ILE A 159 SHEET 4 AA3 4 VAL A 169 ILE A 171 1 N LYS A 170 O VAL A 198 SHEET 1 AA410 GLU A 410 ILE A 411 0 SHEET 2 AA410 LYS A 433 ILE A 436 0 SHEET 3 AA410 ILE A 321 VAL A 327 0 SHEET 4 AA410 ILE A 333 SER A 345 -1 O ILE A 334 N HIS A 326 SHEET 5 AA410 LYS A 350 TYR A 356 -1 O LYS A 354 N GLU A 340 SHEET 6 AA410 TYR A 375 GLU A 381 -1 O ILE A 380 N VAL A 351 SHEET 7 AA410 TRP A 386 TYR A 392 -1 O ARG A 390 N ILE A 377 SHEET 8 AA410 LEU A 398 ASN A 406 -1 O LYS A 399 N TYR A 391 SHEET 9 AA410 LYS A 415 ARG A 427 -1 O ILE A 425 N TYR A 403 SHEET 10 AA410 LYS A 433 ILE A 436 -1 O ILE A 436 N ASP A 424 LINK OD1 ASP A 364 MG MG A 505 1555 1555 2.84 LINK OD1 ASN A 404 MG MG A 506 1555 1555 2.30 LINK OD1 ASP A 420 MG MG A 506 1555 1555 2.24 LINK OD1 ASP A 424 MG MG A 506 1555 1555 2.21 LINK OD2 ASP A 437 MG MG A 505 1555 1555 2.62 LINK MG MG A 505 OP2 U B 3 1555 1555 2.42 LINK MG MG A 506 O HOH A 604 1555 1555 2.17 LINK MG MG A 506 O5' U B 3 1555 1555 2.05 CISPEP 1 ALA A 234 PRO A 235 0 -2.07 CISPEP 2 GLY A 315 PRO A 316 0 6.58 CISPEP 3 GLY A 337 PRO A 338 0 4.13 CISPEP 4 ASP A 347 PRO A 348 0 5.31 CRYST1 120.620 120.620 93.840 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008290 0.004787 0.000000 0.00000 SCALE2 0.000000 0.009573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010656 0.00000