HEADER PROTEASE/NANOBODY INHIBITOR 14-FEB-24 8S0L TITLE CRYSTAL STRUCTURE OF THE TMPRSS2 ZYMOGEN IN COMPLEX WITH THE NANOBODY TITLE 2 A07 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSMEMBRANE PROTEASE SERINE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SERINE PROTEASE 10; COMPND 5 EC: 3.4.21.122; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NANOBODY A07; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TMPRSS2, PRSS10; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: S2; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 11 ORGANISM_TAXID: 30538; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEASE, NANOBODY, INHIBITOR, ZYMOGEN, PROTEIN BINDING, PROTEASE- KEYWDS 2 NANOBODY INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.DUQUERROY,I.FERNANDEZ,F.REY REVDAT 1 26-JUN-24 8S0L 0 JRNL AUTH I.FERNANDEZ,N.SAUNDERS,S.DUQUERROY,W.H.BOLAND,A.ARBABIAN, JRNL AUTH 2 E.BAQUERO,P.LAFAYE,A.HAOUZ,J.BUCHRIESER,O.SCHWARTZ,F.REY JRNL TITL STRUCTURAL INSIGHTS INTO TMPRSS2 MATURATION AND HKU1 BINDING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.SAUNDERS,I.FERNANDEZ,C.PLANCHAIS,V.MICHEL,M.M.RAJAH, REMARK 1 AUTH 2 E.BAQUERO SALAZAR,J.POSTAL,F.PORROT,F.GUIVEL-BENHASSINE, REMARK 1 AUTH 3 C.BLANC,G.CHAUVEAU-LE FRIEC,A.MARTIN,L.GRZELAK,R.M.OKTAVIA, REMARK 1 AUTH 4 A.MEOLA,O.AHOUZI,H.HOOVER-WATSON,M.PROT,D.DELAUNE, REMARK 1 AUTH 5 M.CORNELISSEN,M.DEIJS,V.MERIAUX,H.MOUQUET,E.SIMON-LORIERE, REMARK 1 AUTH 6 L.VAN DER HOEK,P.LAFAYE,F.REY,J.BUCHRIESER,O.SCHWARTZ REMARK 1 TITL TMPRSS2 IS A FUNCTIONAL RECEPTOR FOR HUMAN CORONAVIRUS HKU1 REMARK 1 REF NATURE V. 624 207 2023 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 37879362 REMARK 1 DOI 10.1038/S41586-023-06761-7 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 57982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.430 REMARK 3 FREE R VALUE TEST SET COUNT : 2568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8200 - 4.7100 1.00 3229 117 0.1472 0.1617 REMARK 3 2 4.7100 - 3.7400 1.00 3154 134 0.1289 0.1655 REMARK 3 3 3.7400 - 3.2700 1.00 3085 154 0.1599 0.1958 REMARK 3 4 3.2700 - 2.9700 1.00 3070 162 0.1694 0.2050 REMARK 3 5 2.9700 - 2.7600 1.00 3125 126 0.1811 0.2710 REMARK 3 6 2.7600 - 2.6000 1.00 3068 161 0.1722 0.2059 REMARK 3 7 2.6000 - 2.4700 1.00 3051 169 0.1757 0.2226 REMARK 3 8 2.4700 - 2.3600 1.00 3071 131 0.1746 0.2062 REMARK 3 9 2.3600 - 2.2700 1.00 3086 147 0.1803 0.2254 REMARK 3 10 2.2700 - 2.1900 1.00 3074 127 0.2122 0.2419 REMARK 3 11 2.1900 - 2.1200 1.00 3064 135 0.2276 0.2586 REMARK 3 12 2.1200 - 2.0600 1.00 3057 145 0.2276 0.2984 REMARK 3 13 2.0600 - 2.0100 1.00 3099 142 0.2418 0.2722 REMARK 3 14 2.0100 - 1.9600 1.00 3079 131 0.2600 0.3072 REMARK 3 15 1.9600 - 1.9100 1.00 3037 139 0.2969 0.2896 REMARK 3 16 1.9100 - 1.8700 1.00 3039 147 0.3500 0.3805 REMARK 3 17 1.8700 - 1.8400 1.00 3080 147 0.3855 0.4043 REMARK 3 18 1.8400 - 1.8000 0.97 2946 154 0.4032 0.4358 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4125 REMARK 3 ANGLE : 1.013 5620 REMARK 3 CHIRALITY : 0.068 594 REMARK 3 PLANARITY : 0.009 739 REMARK 3 DIHEDRAL : 13.479 1486 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8270 15.4658 22.4111 REMARK 3 T TENSOR REMARK 3 T11: 1.2249 T22: 1.2430 REMARK 3 T33: 1.2007 T12: 0.0492 REMARK 3 T13: -0.0780 T23: -0.2044 REMARK 3 L TENSOR REMARK 3 L11: 0.5684 L22: 0.5683 REMARK 3 L33: 0.7119 L12: -0.0629 REMARK 3 L13: -0.0789 L23: 0.1174 REMARK 3 S TENSOR REMARK 3 S11: 0.3879 S12: -0.3030 S13: -0.0615 REMARK 3 S21: -0.0375 S22: 0.2459 S23: 0.5309 REMARK 3 S31: -0.2393 S32: -0.3507 S33: 0.0067 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 143 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7229 -6.0386 16.0417 REMARK 3 T TENSOR REMARK 3 T11: 0.4091 T22: 0.4917 REMARK 3 T33: 0.3360 T12: 0.0714 REMARK 3 T13: 0.0384 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 2.4906 L22: 0.6175 REMARK 3 L33: 1.6309 L12: -0.1294 REMARK 3 L13: 1.4225 L23: -0.0900 REMARK 3 S TENSOR REMARK 3 S11: -0.0972 S12: -0.6132 S13: -0.0395 REMARK 3 S21: 0.2323 S22: 0.1219 S23: -0.0890 REMARK 3 S31: -0.0617 S32: -0.1201 S33: 0.0047 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 278 THROUGH 410 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9653 -1.6500 -2.9728 REMARK 3 T TENSOR REMARK 3 T11: 0.2583 T22: 0.2522 REMARK 3 T33: 0.2553 T12: 0.0109 REMARK 3 T13: 0.0105 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 2.0459 L22: 1.7935 REMARK 3 L33: 1.0268 L12: 0.6072 REMARK 3 L13: 0.0766 L23: -0.0383 REMARK 3 S TENSOR REMARK 3 S11: -0.0968 S12: -0.0263 S13: 0.0763 REMARK 3 S21: -0.0500 S22: 0.0502 S23: 0.0829 REMARK 3 S31: -0.0365 S32: 0.0250 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 411 THROUGH 491 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6975 3.2810 -7.4283 REMARK 3 T TENSOR REMARK 3 T11: 0.2762 T22: 0.2937 REMARK 3 T33: 0.2945 T12: -0.0176 REMARK 3 T13: 0.0043 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.5304 L22: 1.9113 REMARK 3 L33: 0.6668 L12: 0.3726 REMARK 3 L13: 0.0000 L23: -0.3353 REMARK 3 S TENSOR REMARK 3 S11: -0.1575 S12: 0.0413 S13: 0.0960 REMARK 3 S21: -0.1967 S22: 0.1093 S23: -0.0689 REMARK 3 S31: 0.0182 S32: 0.0491 S33: 0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6373 27.3338 -16.5398 REMARK 3 T TENSOR REMARK 3 T11: 0.4296 T22: 0.4129 REMARK 3 T33: 0.6966 T12: -0.0353 REMARK 3 T13: -0.1430 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.0870 L22: 0.0719 REMARK 3 L33: 0.1048 L12: 0.0182 REMARK 3 L13: -0.0682 L23: -0.0070 REMARK 3 S TENSOR REMARK 3 S11: 0.0229 S12: -0.0542 S13: -0.0641 REMARK 3 S21: 0.4614 S22: 0.1211 S23: -0.7782 REMARK 3 S31: -0.1269 S32: 0.3104 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1721 32.8402 -28.7529 REMARK 3 T TENSOR REMARK 3 T11: 0.5032 T22: 0.3992 REMARK 3 T33: 0.4223 T12: 0.0225 REMARK 3 T13: -0.0648 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 0.0365 L22: 0.0312 REMARK 3 L33: 0.0284 L12: 0.0252 REMARK 3 L13: 0.0029 L23: -0.0164 REMARK 3 S TENSOR REMARK 3 S11: -0.1174 S12: 0.2710 S13: 0.3214 REMARK 3 S21: -0.5546 S22: -0.1228 S23: 0.2161 REMARK 3 S31: -0.1535 S32: -0.3448 S33: -0.0007 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0340 22.6973 -18.6484 REMARK 3 T TENSOR REMARK 3 T11: 0.3421 T22: 0.2988 REMARK 3 T33: 0.3548 T12: -0.0147 REMARK 3 T13: -0.0363 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.2283 L22: 0.5964 REMARK 3 L33: 0.2477 L12: -0.0102 REMARK 3 L13: 0.2296 L23: -0.1321 REMARK 3 S TENSOR REMARK 3 S11: 0.0047 S12: 0.1478 S13: 0.0030 REMARK 3 S21: 0.1365 S22: -0.0835 S23: -0.2113 REMARK 3 S31: -0.0840 S32: 0.0548 S33: 0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 42 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1113 26.7008 -12.0185 REMARK 3 T TENSOR REMARK 3 T11: 0.4851 T22: 0.3433 REMARK 3 T33: 0.4187 T12: -0.0136 REMARK 3 T13: 0.0336 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.0829 L22: 0.1109 REMARK 3 L33: 0.0381 L12: 0.0031 REMARK 3 L13: 0.0020 L23: -0.0646 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: -0.1822 S13: 0.0784 REMARK 3 S21: 0.6378 S22: -0.0152 S23: 0.2022 REMARK 3 S31: -0.0311 S32: -0.0606 S33: -0.0002 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3991 15.7233 -20.5832 REMARK 3 T TENSOR REMARK 3 T11: 0.4060 T22: 0.3581 REMARK 3 T33: 0.4625 T12: -0.0124 REMARK 3 T13: -0.0563 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.2512 L22: 0.7164 REMARK 3 L33: 0.4792 L12: 0.1470 REMARK 3 L13: 0.3226 L23: -0.0231 REMARK 3 S TENSOR REMARK 3 S11: 0.1180 S12: 0.1067 S13: -0.5323 REMARK 3 S21: -0.0182 S22: 0.0009 S23: 0.3697 REMARK 3 S31: 0.3667 S32: -0.1698 S33: 0.0034 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 76 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5877 24.5086 -24.2752 REMARK 3 T TENSOR REMARK 3 T11: 0.3923 T22: 0.3946 REMARK 3 T33: 0.3728 T12: 0.0238 REMARK 3 T13: -0.0184 T23: -0.0336 REMARK 3 L TENSOR REMARK 3 L11: 0.2371 L22: 0.6263 REMARK 3 L33: 0.4797 L12: 0.2394 REMARK 3 L13: 0.1891 L23: -0.0971 REMARK 3 S TENSOR REMARK 3 S11: 0.1502 S12: 0.0264 S13: 0.0767 REMARK 3 S21: -0.2727 S22: -0.1594 S23: 0.1168 REMARK 3 S31: 0.0077 S32: 0.0147 S33: 0.0001 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 94 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3238 19.2751 -11.4575 REMARK 3 T TENSOR REMARK 3 T11: 0.3757 T22: 0.3161 REMARK 3 T33: 0.3956 T12: -0.0508 REMARK 3 T13: -0.0331 T23: 0.0481 REMARK 3 L TENSOR REMARK 3 L11: 0.0011 L22: 0.2798 REMARK 3 L33: 0.0588 L12: -0.0269 REMARK 3 L13: 0.0078 L23: -0.1296 REMARK 3 S TENSOR REMARK 3 S11: 0.0075 S12: -0.1796 S13: -0.0616 REMARK 3 S21: 0.2934 S22: -0.0449 S23: -0.0394 REMARK 3 S31: -0.0931 S32: -0.0536 S33: -0.0001 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 124 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5395 35.5835 -23.1936 REMARK 3 T TENSOR REMARK 3 T11: 0.4175 T22: 0.3436 REMARK 3 T33: 0.4640 T12: 0.0580 REMARK 3 T13: -0.0931 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 0.2153 L22: 0.0772 REMARK 3 L33: 0.1234 L12: 0.0686 REMARK 3 L13: 0.0041 L23: 0.0287 REMARK 3 S TENSOR REMARK 3 S11: 0.1085 S12: 0.4292 S13: 0.4720 REMARK 3 S21: -0.4857 S22: -0.1670 S23: 0.6911 REMARK 3 S31: -0.5459 S32: -0.3849 S33: -0.0020 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8S0L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1292136597. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978565 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58045 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 2.64300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 %W/V PEG 3350, 0.05 M HEPES (PH REMARK 280 7.0), 1 %W/V TRYPTONE, 0.001 %W/V NAN3, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 91.33250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.90400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 91.33250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.90400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 940 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 287 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 289 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 319 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 107 REMARK 465 PHE A 108 REMARK 465 MET A 109 REMARK 465 GLY A 110 REMARK 465 SER A 111 REMARK 465 LYS A 112 REMARK 465 CYS A 113 REMARK 465 SER A 114 REMARK 465 ASN A 115 REMARK 465 SER A 116 REMARK 465 SER A 250 REMARK 465 SER A 251 REMARK 465 ARG A 252 REMARK 465 GLN A 253 REMARK 465 SER A 254 REMARK 465 ARG A 255 REMARK 465 GLY A 492 REMARK 465 GLY A 493 REMARK 465 PRO A 494 REMARK 465 PHE A 495 REMARK 465 GLU A 496 REMARK 465 ASP A 497 REMARK 465 ASP A 498 REMARK 465 ASP A 499 REMARK 465 ASP A 500 REMARK 465 LYS A 501 REMARK 465 MET B -12 REMARK 465 GLY B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 SER B -2 REMARK 465 SER B -1 REMARK 465 GLY B 0 REMARK 465 GLY B 1 REMARK 465 GLY B 132 REMARK 465 GLY B 133 REMARK 465 SER B 134 REMARK 465 CYS B 135 REMARK 465 SER B 136 REMARK 465 ALA B 137 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 707 O HOH A 935 2.12 REMARK 500 O HOH B 312 O HOH B 313 2.17 REMARK 500 NE2 GLN A 438 O HOH A 701 2.17 REMARK 500 O HOH A 757 O HOH A 884 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 98 CB CYS B 98 SG -0.109 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 121 -159.63 -144.91 REMARK 500 LYS A 191 -114.31 60.61 REMARK 500 TYR A 195 -60.79 -103.58 REMARK 500 ASN A 218 -3.05 64.90 REMARK 500 GLU A 388 138.20 -173.91 REMARK 500 VAL A 415 -104.19 -117.23 REMARK 500 ASN A 433 -39.79 76.23 REMARK 500 SER A 460 -67.99 -122.14 REMARK 500 SER A 463 -33.25 67.26 REMARK 500 ASP B 68 -24.74 77.98 REMARK 500 ALA B 94 166.06 174.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 131 O REMARK 620 2 ASP A 134 OD1 93.0 REMARK 620 3 VAL A 136 O 167.8 88.1 REMARK 620 4 ASP A 144 OD2 90.6 175.8 87.9 REMARK 620 5 GLU A 145 OE2 99.6 87.8 92.6 93.9 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8S0M RELATED DB: PDB REMARK 900 RELATED ID: 8S0N RELATED DB: PDB DBREF 8S0L A 107 492 UNP O15393 TMPS2_HUMAN 107 492 DBREF 8S0L B -12 137 PDB 8S0L 8S0L -12 137 SEQADV 8S0L ALA A 441 UNP O15393 SER 441 ENGINEERED MUTATION SEQADV 8S0L GLY A 493 UNP O15393 EXPRESSION TAG SEQADV 8S0L PRO A 494 UNP O15393 EXPRESSION TAG SEQADV 8S0L PHE A 495 UNP O15393 EXPRESSION TAG SEQADV 8S0L GLU A 496 UNP O15393 EXPRESSION TAG SEQADV 8S0L ASP A 497 UNP O15393 EXPRESSION TAG SEQADV 8S0L ASP A 498 UNP O15393 EXPRESSION TAG SEQADV 8S0L ASP A 499 UNP O15393 EXPRESSION TAG SEQADV 8S0L ASP A 500 UNP O15393 EXPRESSION TAG SEQADV 8S0L LYS A 501 UNP O15393 EXPRESSION TAG SEQRES 1 A 395 LYS PHE MET GLY SER LYS CYS SER ASN SER GLY ILE GLU SEQRES 2 A 395 CYS ASP SER SER GLY THR CYS ILE ASN PRO SER ASN TRP SEQRES 3 A 395 CYS ASP GLY VAL SER HIS CYS PRO GLY GLY GLU ASP GLU SEQRES 4 A 395 ASN ARG CYS VAL ARG LEU TYR GLY PRO ASN PHE ILE LEU SEQRES 5 A 395 GLN VAL TYR SER SER GLN ARG LYS SER TRP HIS PRO VAL SEQRES 6 A 395 CYS GLN ASP ASP TRP ASN GLU ASN TYR GLY ARG ALA ALA SEQRES 7 A 395 CYS ARG ASP MET GLY TYR LYS ASN ASN PHE TYR SER SER SEQRES 8 A 395 GLN GLY ILE VAL ASP ASP SER GLY SER THR SER PHE MET SEQRES 9 A 395 LYS LEU ASN THR SER ALA GLY ASN VAL ASP ILE TYR LYS SEQRES 10 A 395 LYS LEU TYR HIS SER ASP ALA CYS SER SER LYS ALA VAL SEQRES 11 A 395 VAL SER LEU ARG CYS ILE ALA CYS GLY VAL ASN LEU ASN SEQRES 12 A 395 SER SER ARG GLN SER ARG ILE VAL GLY GLY GLU SER ALA SEQRES 13 A 395 LEU PRO GLY ALA TRP PRO TRP GLN VAL SER LEU HIS VAL SEQRES 14 A 395 GLN ASN VAL HIS VAL CYS GLY GLY SER ILE ILE THR PRO SEQRES 15 A 395 GLU TRP ILE VAL THR ALA ALA HIS CYS VAL GLU LYS PRO SEQRES 16 A 395 LEU ASN ASN PRO TRP HIS TRP THR ALA PHE ALA GLY ILE SEQRES 17 A 395 LEU ARG GLN SER PHE MET PHE TYR GLY ALA GLY TYR GLN SEQRES 18 A 395 VAL GLU LYS VAL ILE SER HIS PRO ASN TYR ASP SER LYS SEQRES 19 A 395 THR LYS ASN ASN ASP ILE ALA LEU MET LYS LEU GLN LYS SEQRES 20 A 395 PRO LEU THR PHE ASN ASP LEU VAL LYS PRO VAL CYS LEU SEQRES 21 A 395 PRO ASN PRO GLY MET MET LEU GLN PRO GLU GLN LEU CYS SEQRES 22 A 395 TRP ILE SER GLY TRP GLY ALA THR GLU GLU LYS GLY LYS SEQRES 23 A 395 THR SER GLU VAL LEU ASN ALA ALA LYS VAL LEU LEU ILE SEQRES 24 A 395 GLU THR GLN ARG CYS ASN SER ARG TYR VAL TYR ASP ASN SEQRES 25 A 395 LEU ILE THR PRO ALA MET ILE CYS ALA GLY PHE LEU GLN SEQRES 26 A 395 GLY ASN VAL ASP SER CYS GLN GLY ASP ALA GLY GLY PRO SEQRES 27 A 395 LEU VAL THR SER LYS ASN ASN ILE TRP TRP LEU ILE GLY SEQRES 28 A 395 ASP THR SER TRP GLY SER GLY CYS ALA LYS ALA TYR ARG SEQRES 29 A 395 PRO GLY VAL TYR GLY ASN VAL MET VAL PHE THR ASP TRP SEQRES 30 A 395 ILE TYR ARG GLN MET ARG ALA ASP GLY GLY PRO PHE GLU SEQRES 31 A 395 ASP ASP ASP ASP LYS SEQRES 1 B 150 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 150 GLY GLY GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU SEQRES 3 B 150 VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS THR SER SEQRES 4 B 150 SER GLY SER PRO LEU GLU HIS TYR ASP ILE ILE TRP PHE SEQRES 5 B 150 ARG GLN ALA PRO GLY ARG GLU ARG GLU GLY VAL SER SER SEQRES 6 B 150 ILE THR THR SER GLY GLY HIS THR ASN TYR ALA ASP SER SEQRES 7 B 150 VAL LYS ASP ARG PHE THR ILE SER ARG ASP ASN ALA LYS SEQRES 8 B 150 ASN VAL VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU SEQRES 9 B 150 ASP THR ALA VAL TYR TYR CYS ALA GLY ARG VAL GLY GLY SEQRES 10 B 150 ARG ARG ASN TRP ILE VAL PRO LEU ASP GLY TYR ASP ASN SEQRES 11 B 150 ALA TYR TRP GLY GLN GLY THR GLN VAL THR VAL SER SER SEQRES 12 B 150 GLY GLY GLY SER CYS SER ALA HET NAG A 601 14 HET CA A 602 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG C8 H15 N O6 FORMUL 4 CA CA 2+ FORMUL 5 HOH *401(H2 O) HELIX 1 AA1 ASN A 128 TRP A 132 5 5 HELIX 2 AA2 GLY A 142 ASN A 146 5 5 HELIX 3 AA3 ASN A 177 MET A 188 1 12 HELIX 4 AA4 ASP A 220 LYS A 224 1 5 HELIX 5 AA5 ALA A 294 GLU A 299 5 6 HELIX 6 AA6 ASN A 304 HIS A 307 5 4 HELIX 7 AA7 ARG A 316 MET A 320 5 5 HELIX 8 AA8 GLU A 406 ASN A 411 1 6 HELIX 9 AA9 VAL A 477 ASP A 491 1 15 HELIX 10 AB1 PRO B 30 GLU B 32 5 3 HELIX 11 AB2 LYS B 89 THR B 93 5 5 HELIX 12 AB3 PRO B 111 ASN B 117 5 7 SHEET 1 AA1 2 ILE A 118 GLU A 119 0 SHEET 2 AA1 2 CYS A 126 ILE A 127 -1 O ILE A 127 N ILE A 118 SHEET 1 AA2 3 VAL A 149 TYR A 152 0 SHEET 2 AA2 3 ILE A 157 SER A 162 -1 O GLN A 159 N ARG A 150 SHEET 3 AA2 3 SER A 167 PRO A 170 -1 O HIS A 169 N VAL A 160 SHEET 1 AA3 2 SER A 196 ILE A 200 0 SHEET 2 AA3 2 VAL A 236 ARG A 240 -1 O ARG A 240 N SER A 196 SHEET 1 AA4 2 PHE A 209 LEU A 212 0 SHEET 2 AA4 2 LEU A 225 SER A 228 -1 O SER A 228 N PHE A 209 SHEET 1 AA5 8 GLU A 260 SER A 261 0 SHEET 2 AA5 8 ASN A 398 ILE A 405 -1 O ALA A 399 N GLU A 260 SHEET 3 AA5 8 MET A 424 GLY A 428 -1 O GLY A 428 N LEU A 403 SHEET 4 AA5 8 GLY A 472 ASN A 476 -1 O TYR A 474 N ILE A 425 SHEET 5 AA5 8 ILE A 452 TRP A 461 -1 N ASP A 458 O GLY A 475 SHEET 6 AA5 8 PRO A 444 LYS A 449 -1 N THR A 447 O TRP A 454 SHEET 7 AA5 8 LEU A 378 GLY A 383 -1 N TRP A 380 O VAL A 446 SHEET 8 AA5 8 ASN A 398 ILE A 405 -1 O VAL A 402 N CYS A 379 SHEET 1 AA6 7 GLN A 270 VAL A 275 0 SHEET 2 AA6 7 VAL A 278 ILE A 285 -1 O VAL A 280 N LEU A 273 SHEET 3 AA6 7 TRP A 290 THR A 293 -1 O VAL A 292 N SER A 284 SHEET 4 AA6 7 ALA A 347 LEU A 351 -1 O ALA A 347 N THR A 293 SHEET 5 AA6 7 TYR A 326 SER A 333 -1 N GLU A 329 O LYS A 350 SHEET 6 AA6 7 THR A 309 ALA A 312 -1 N ALA A 310 O TYR A 326 SHEET 7 AA6 7 GLN A 270 VAL A 275 -1 N SER A 272 O PHE A 311 SHEET 1 AA7 4 GLN B 5 SER B 9 0 SHEET 2 AA7 4 LEU B 20 SER B 27 -1 O SER B 23 N SER B 9 SHEET 3 AA7 4 VAL B 80 MET B 85 -1 O MET B 85 N LEU B 20 SHEET 4 AA7 4 PHE B 70 ASP B 75 -1 N SER B 73 O TYR B 82 SHEET 1 AA8 6 GLY B 12 VAL B 14 0 SHEET 2 AA8 6 THR B 124 VAL B 128 1 O THR B 127 N GLY B 12 SHEET 3 AA8 6 ALA B 94 VAL B 102 -1 N TYR B 96 O THR B 124 SHEET 4 AA8 6 TYR B 34 GLN B 41 -1 N PHE B 39 O TYR B 97 SHEET 5 AA8 6 GLU B 48 ILE B 53 -1 O SER B 51 N TRP B 38 SHEET 6 AA8 6 THR B 60 TYR B 62 -1 O ASN B 61 N SER B 52 SHEET 1 AA9 4 GLY B 12 VAL B 14 0 SHEET 2 AA9 4 THR B 124 VAL B 128 1 O THR B 127 N GLY B 12 SHEET 3 AA9 4 ALA B 94 VAL B 102 -1 N TYR B 96 O THR B 124 SHEET 4 AA9 4 TYR B 119 TRP B 120 -1 O TYR B 119 N GLY B 100 SSBOND 1 CYS A 120 CYS A 139 1555 1555 2.03 SSBOND 2 CYS A 133 CYS A 148 1555 1555 2.07 SSBOND 3 CYS A 172 CYS A 231 1555 1555 2.07 SSBOND 4 CYS A 185 CYS A 241 1555 1555 2.08 SSBOND 5 CYS A 244 CYS A 365 1555 1555 2.04 SSBOND 6 CYS A 281 CYS A 297 1555 1555 2.03 SSBOND 7 CYS A 410 CYS A 426 1555 1555 2.04 SSBOND 8 CYS A 437 CYS A 465 1555 1555 2.04 LINK ND2 ASN A 213 C1 NAG A 601 1555 1555 1.44 LINK O ASN A 131 CA CA A 602 1555 1555 2.26 LINK OD1 ASP A 134 CA CA A 602 1555 1555 2.50 LINK O VAL A 136 CA CA A 602 1555 1555 2.26 LINK OD2 ASP A 144 CA CA A 602 1555 1555 2.46 LINK OE2 GLU A 145 CA CA A 602 1555 1555 2.37 CISPEP 1 LYS A 300 PRO A 301 0 11.13 CRYST1 182.665 53.808 65.477 90.00 100.74 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005475 0.000000 0.001038 0.00000 SCALE2 0.000000 0.018585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015545 0.00000