HEADER TRANSFERASE 15-FEB-24 8S14 TITLE C-KIT KINASE DOMAIN IN COMPLEX WITH SUNITINIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAST/STEM CELL GROWTH FACTOR RECEPTOR KIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SCFR,PIEBALD TRAIT PROTEIN,PBT,PROTO-ONCOGENE C-KIT, COMPND 5 TYROSINE-PROTEIN KINASE KIT,P145 C-KIT,V-KIT HARDY-ZUCKERMAN 4 FELINE COMPND 6 SARCOMA VIRAL ONCOGENE HOMOLOG; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIT, SCFR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS STEM CELL FACTOR RECEPTOR, INHIBITOR, GIST, SUNITINIB, CANCER, KEYWDS 2 RESISTANCE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.TEUBER,J.NIGGENABER,I.LANDEL,M.P.MUELLER,D.RAUH REVDAT 1 03-SEP-25 8S14 0 JRNL AUTH A.TEUBER,J.NIGGENABER,S.B.KLEINBOELTING,I.LANDEL,J.WARMUTH, JRNL AUTH 2 D.BUSICK,M.P.MUELLER,S.BAUER,D.RAUH JRNL TITL C-KIT KINASE DOMAIN IN COMPLEX WITH SUNITINIB JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 51205 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2561 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.4200 - 3.9300 1.00 2893 153 0.1596 0.1633 REMARK 3 2 3.9300 - 3.1200 1.00 2845 149 0.1608 0.2187 REMARK 3 3 3.1200 - 2.7300 1.00 2836 150 0.1799 0.1871 REMARK 3 4 2.7300 - 2.4800 1.00 2848 150 0.1835 0.2150 REMARK 3 5 2.4800 - 2.3000 1.00 2812 148 0.1846 0.2036 REMARK 3 6 2.3000 - 2.1600 1.00 2823 148 0.1864 0.2209 REMARK 3 7 2.1600 - 2.0500 0.99 2815 148 0.1897 0.2324 REMARK 3 8 2.0500 - 1.9700 0.99 2813 149 0.1962 0.2451 REMARK 3 9 1.9700 - 1.8900 0.99 2809 147 0.2085 0.2521 REMARK 3 10 1.8900 - 1.8200 0.99 2785 147 0.2499 0.2962 REMARK 3 11 1.8200 - 1.7700 0.99 2785 147 0.2374 0.2836 REMARK 3 12 1.7700 - 1.7200 0.98 2750 145 0.2296 0.2662 REMARK 3 13 1.7200 - 1.6700 0.98 2784 145 0.2401 0.3079 REMARK 3 14 1.6700 - 1.6300 0.97 2743 145 0.3208 0.3330 REMARK 3 15 1.6300 - 1.5900 0.96 2709 142 0.4002 0.4289 REMARK 3 16 1.5900 - 1.5600 0.89 2528 133 0.5228 0.4865 REMARK 3 17 1.5600 - 1.5300 0.78 2194 116 0.7779 0.7196 REMARK 3 18 1.5300 - 1.5000 0.67 1872 99 1.0098 1.0177 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.312 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.766 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2534 REMARK 3 ANGLE : 0.764 3450 REMARK 3 CHIRALITY : 0.051 373 REMARK 3 PLANARITY : 0.006 434 REMARK 3 DIHEDRAL : 13.558 922 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 554 THROUGH 608 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1279 9.6157 3.8949 REMARK 3 T TENSOR REMARK 3 T11: 0.2940 T22: 0.3287 REMARK 3 T33: 0.2292 T12: 0.0391 REMARK 3 T13: 0.0198 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 4.1385 L22: 3.0879 REMARK 3 L33: 3.7502 L12: -2.1550 REMARK 3 L13: 0.8436 L23: -1.6890 REMARK 3 S TENSOR REMARK 3 S11: 0.0919 S12: 0.2729 S13: -0.0296 REMARK 3 S21: -0.3095 S22: -0.2401 S23: -0.1989 REMARK 3 S31: 0.4751 S32: 0.6109 S33: 0.1392 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 609 THROUGH 630 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5151 0.3241 5.6143 REMARK 3 T TENSOR REMARK 3 T11: 0.5914 T22: 0.3987 REMARK 3 T33: 0.4625 T12: 0.1555 REMARK 3 T13: 0.0268 T23: 0.0612 REMARK 3 L TENSOR REMARK 3 L11: 9.9429 L22: 3.5409 REMARK 3 L33: 5.8979 L12: 1.3185 REMARK 3 L13: 5.0375 L23: 0.4654 REMARK 3 S TENSOR REMARK 3 S11: -0.1963 S12: 0.3869 S13: -0.8919 REMARK 3 S21: -1.0514 S22: 0.2640 S23: 0.1413 REMARK 3 S31: 0.3692 S32: 0.7952 S33: 0.0148 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 631 THROUGH 647 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3512 10.4349 -0.2827 REMARK 3 T TENSOR REMARK 3 T11: 0.3839 T22: 0.4526 REMARK 3 T33: 0.3099 T12: 0.0743 REMARK 3 T13: -0.0068 T23: 0.0454 REMARK 3 L TENSOR REMARK 3 L11: 4.7915 L22: 2.4583 REMARK 3 L33: 2.9181 L12: 2.5524 REMARK 3 L13: 1.2826 L23: 0.2355 REMARK 3 S TENSOR REMARK 3 S11: 0.2267 S12: 0.2836 S13: -0.3205 REMARK 3 S21: -0.5309 S22: -0.0971 S23: -0.1638 REMARK 3 S31: 0.3548 S32: 0.1434 S33: -0.2352 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 648 THROUGH 677 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9311 8.3354 11.2398 REMARK 3 T TENSOR REMARK 3 T11: 0.2434 T22: 0.4417 REMARK 3 T33: 0.2843 T12: 0.0532 REMARK 3 T13: -0.0046 T23: 0.0552 REMARK 3 L TENSOR REMARK 3 L11: 4.2157 L22: 4.2222 REMARK 3 L33: 3.4281 L12: -2.0105 REMARK 3 L13: -1.8648 L23: -0.2073 REMARK 3 S TENSOR REMARK 3 S11: 0.1368 S12: 0.1142 S13: -0.0910 REMARK 3 S21: -0.3019 S22: -0.2434 S23: -0.2902 REMARK 3 S31: 0.2099 S32: 0.5442 S33: 0.1492 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 678 THROUGH 765 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6338 4.3555 33.7002 REMARK 3 T TENSOR REMARK 3 T11: 0.3548 T22: 0.3640 REMARK 3 T33: 0.3057 T12: 0.0506 REMARK 3 T13: 0.0128 T23: 0.1063 REMARK 3 L TENSOR REMARK 3 L11: 4.5587 L22: 2.5890 REMARK 3 L33: 8.1572 L12: -0.8329 REMARK 3 L13: 2.5129 L23: 0.6818 REMARK 3 S TENSOR REMARK 3 S11: -0.1420 S12: -0.7326 S13: -0.2175 REMARK 3 S21: 0.4818 S22: 0.0435 S23: 0.0978 REMARK 3 S31: 0.5446 S32: 0.0717 S33: 0.0335 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 766 THROUGH 786 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3921 18.0903 23.6598 REMARK 3 T TENSOR REMARK 3 T11: 0.2310 T22: 0.2532 REMARK 3 T33: 0.2448 T12: -0.0394 REMARK 3 T13: -0.0168 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 2.8126 L22: 5.0785 REMARK 3 L33: 7.9042 L12: 0.6952 REMARK 3 L13: -2.0115 L23: -5.3102 REMARK 3 S TENSOR REMARK 3 S11: -0.0204 S12: -0.3397 S13: 0.0401 REMARK 3 S21: 0.2227 S22: -0.2401 S23: -0.1856 REMARK 3 S31: -0.3289 S32: 0.6983 S33: 0.2395 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 787 THROUGH 808 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1057 11.5407 17.1794 REMARK 3 T TENSOR REMARK 3 T11: 0.2362 T22: 0.2478 REMARK 3 T33: 0.2304 T12: 0.0147 REMARK 3 T13: 0.0159 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 4.0743 L22: 2.5806 REMARK 3 L33: 3.7172 L12: 0.2146 REMARK 3 L13: 0.1502 L23: -1.4401 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: -0.2863 S13: -0.0891 REMARK 3 S21: -0.0673 S22: -0.0198 S23: -0.1780 REMARK 3 S31: 0.1043 S32: 0.3487 S33: 0.1621 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 809 THROUGH 837 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6927 3.9077 9.9975 REMARK 3 T TENSOR REMARK 3 T11: 0.4235 T22: 0.3481 REMARK 3 T33: 0.3490 T12: -0.0053 REMARK 3 T13: 0.0155 T23: -0.0893 REMARK 3 L TENSOR REMARK 3 L11: 4.2574 L22: 2.5377 REMARK 3 L33: 3.2017 L12: 0.2037 REMARK 3 L13: 0.2288 L23: -0.6278 REMARK 3 S TENSOR REMARK 3 S11: -0.0816 S12: 0.9069 S13: -0.7822 REMARK 3 S21: -0.5561 S22: 0.1230 S23: -0.1556 REMARK 3 S31: 0.6396 S32: 0.2160 S33: -0.0209 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 838 THROUGH 863 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1262 15.9222 15.9462 REMARK 3 T TENSOR REMARK 3 T11: 0.2319 T22: 0.1762 REMARK 3 T33: 0.2050 T12: -0.0263 REMARK 3 T13: 0.0113 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 3.0299 L22: 1.5199 REMARK 3 L33: 4.0185 L12: -0.5384 REMARK 3 L13: 1.1133 L23: -1.2960 REMARK 3 S TENSOR REMARK 3 S11: -0.0414 S12: 0.0885 S13: 0.0087 REMARK 3 S21: -0.2028 S22: 0.0968 S23: 0.0353 REMARK 3 S31: -0.0716 S32: -0.1372 S33: -0.0522 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 864 THROUGH 896 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4834 9.2175 23.1327 REMARK 3 T TENSOR REMARK 3 T11: 0.2499 T22: 0.3204 REMARK 3 T33: 0.3095 T12: -0.0391 REMARK 3 T13: 0.0303 T23: 0.0647 REMARK 3 L TENSOR REMARK 3 L11: 3.4977 L22: 1.3895 REMARK 3 L33: 3.2088 L12: -0.7033 REMARK 3 L13: 1.2797 L23: -0.1739 REMARK 3 S TENSOR REMARK 3 S11: 0.0591 S12: -0.3411 S13: -0.3834 REMARK 3 S21: 0.0449 S22: 0.0259 S23: 0.2209 REMARK 3 S31: 0.2823 S32: -0.5200 S33: -0.1261 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 897 THROUGH 916 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9571 22.4997 23.1353 REMARK 3 T TENSOR REMARK 3 T11: 0.2676 T22: 0.1903 REMARK 3 T33: 0.2279 T12: 0.0320 REMARK 3 T13: 0.0250 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 6.8857 L22: 4.3299 REMARK 3 L33: 8.2128 L12: 0.9982 REMARK 3 L13: 0.5312 L23: -0.5939 REMARK 3 S TENSOR REMARK 3 S11: -0.0431 S12: -0.3810 S13: 0.2605 REMARK 3 S21: 0.1973 S22: -0.0129 S23: 0.1849 REMARK 3 S31: -0.4327 S32: -0.2530 S33: 0.0721 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 917 THROUGH 931 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9509 25.6150 28.1552 REMARK 3 T TENSOR REMARK 3 T11: 0.3579 T22: 0.2827 REMARK 3 T33: 0.2969 T12: -0.0521 REMARK 3 T13: -0.0049 T23: -0.0712 REMARK 3 L TENSOR REMARK 3 L11: 5.7185 L22: 6.9625 REMARK 3 L33: 7.5694 L12: 0.4510 REMARK 3 L13: 0.7684 L23: 2.1038 REMARK 3 S TENSOR REMARK 3 S11: 0.1193 S12: -0.5909 S13: 0.3703 REMARK 3 S21: 0.6693 S22: 0.1072 S23: -0.1379 REMARK 3 S31: -0.6668 S32: 0.4223 S33: -0.0526 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8S14 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1292136591. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51247 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 43.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN CONCENTRATION: 6.6 MG/ML, 14 % REMARK 280 PEG8000, 20 % ETHYLENE GLYCOLE, 100 MM BICINE, 30 MM NAI, 30 MM REMARK 280 NABR, 30 MM NAF, PH 9.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 285.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.88500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.91000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.88500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.91000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 548 REMARK 465 SER A 549 REMARK 465 MET A 550 REMARK 465 PRO A 551 REMARK 465 MET A 552 REMARK 465 TYR A 553 REMARK 465 ASN A 564 REMARK 465 GLY A 565 REMARK 465 LEU A 611 REMARK 465 ILE A 612 REMARK 465 LYS A 613 REMARK 465 SER A 614 REMARK 465 ASP A 615 REMARK 465 ALA A 616 REMARK 465 VAL A 754 REMARK 465 ALA A 755 REMARK 465 PRO A 756 REMARK 465 GLU A 757 REMARK 465 ASP A 758 REMARK 465 LEU A 759 REMARK 465 TYR A 760 REMARK 465 LYS A 761 REMARK 465 THR A 932 REMARK 465 ASN A 933 REMARK 465 HIS A 934 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 554 CG CD OE1 OE2 REMARK 470 GLU A 562 CG CD OE1 OE2 REMARK 470 SER A 563 OG REMARK 470 ASN A 566 CG OD1 ND2 REMARK 470 LYS A 593 CG CD CE NZ REMARK 470 PHE A 600 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 609 CG CD OE1 NE2 REMARK 470 GLU A 688 CG CD OE1 OE2 REMARK 470 LYS A 693 CG CD CE NZ REMARK 470 ASP A 762 CG OD1 OD2 REMARK 470 LYS A 818 CG CD CE NZ REMARK 470 GLU A 930 CG CD OE1 OE2 REMARK 470 SER A 931 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1283 O HOH A 1290 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 580 0.65 -67.47 REMARK 500 ARG A 791 -1.96 71.57 REMARK 500 ASP A 792 40.26 -148.28 REMARK 500 REMARK 500 REMARK: NULL DBREF 8S14 A 551 687 UNP P10721 KIT_HUMAN 551 687 DBREF 8S14 A 766 934 UNP P10721 KIT_HUMAN 766 934 SEQADV 8S14 GLY A 548 UNP P10721 EXPRESSION TAG SEQADV 8S14 SER A 549 UNP P10721 EXPRESSION TAG SEQADV 8S14 MET A 550 UNP P10721 EXPRESSION TAG SEQADV 8S14 SER A 563 UNP P10721 ILE 563 ENGINEERED MUTATION SEQADV 8S14 SER A 569 UNP P10721 VAL 569 ENGINEERED MUTATION SEQADV 8S14 GLN A 609 UNP P10721 TYR 609 ENGINEERED MUTATION SEQADV 8S14 SER A 631 UNP P10721 LEU 631 ENGINEERED MUTATION SEQADV 8S14 GLU A 651 UNP P10721 MET 651 ENGINEERED MUTATION SEQADV 8S14 HIS A 662 UNP P10721 ILE 662 ENGINEERED MUTATION SEQADV 8S14 GLU A 688 UNP P10721 LINKER SEQADV 8S14 PHE A 689 UNP P10721 LINKER SEQADV 8S14 VAL A 690 UNP P10721 LINKER SEQADV 8S14 PRO A 691 UNP P10721 LINKER SEQADV 8S14 TYR A 692 UNP P10721 LINKER SEQADV 8S14 LYS A 693 UNP P10721 LINKER SEQADV 8S14 VAL A 754 UNP P10721 LINKER SEQADV 8S14 ALA A 755 UNP P10721 LINKER SEQADV 8S14 PRO A 756 UNP P10721 LINKER SEQADV 8S14 GLU A 757 UNP P10721 LINKER SEQADV 8S14 ASP A 758 UNP P10721 LINKER SEQADV 8S14 LEU A 759 UNP P10721 LINKER SEQADV 8S14 TYR A 760 UNP P10721 LINKER SEQADV 8S14 LYS A 761 UNP P10721 LINKER SEQADV 8S14 ASP A 762 UNP P10721 LINKER SEQADV 8S14 PHE A 763 UNP P10721 LINKER SEQADV 8S14 LEU A 764 UNP P10721 LINKER SEQADV 8S14 THR A 765 UNP P10721 LINKER SEQADV 8S14 HIS A 768 UNP P10721 ASP 768 ENGINEERED MUTATION SEQADV 8S14 ASN A 804 UNP P10721 ARG 804 ENGINEERED MUTATION SEQADV 8S14 ASP A 825 UNP P10721 VAL 825 ENGINEERED MUTATION SEQADV 8S14 SER A 844 UNP P10721 CYS 844 ENGINEERED MUTATION SEQADV 8S14 SER A 890 UNP P10721 LEU 890 ENGINEERED MUTATION SEQADV 8S14 TYR A 894 UNP P10721 HIS 894 ENGINEERED MUTATION SEQADV 8S14 ASP A 912 UNP P10721 LEU 912 ENGINEERED MUTATION SEQADV 8S14 ASP A 923 UNP P10721 LEU 923 ENGINEERED MUTATION SEQRES 1 A 327 GLY SER MET PRO MET TYR GLU VAL GLN TRP LYS VAL VAL SEQRES 2 A 327 GLU GLU SER ASN GLY ASN ASN TYR SER TYR ILE ASP PRO SEQRES 3 A 327 THR GLN LEU PRO TYR ASP HIS LYS TRP GLU PHE PRO ARG SEQRES 4 A 327 ASN ARG LEU SER PHE GLY LYS THR LEU GLY ALA GLY ALA SEQRES 5 A 327 PHE GLY LYS VAL VAL GLU ALA THR ALA GLN GLY LEU ILE SEQRES 6 A 327 LYS SER ASP ALA ALA MET THR VAL ALA VAL LYS MET LEU SEQRES 7 A 327 LYS PRO SER ALA HIS SER THR GLU ARG GLU ALA LEU MET SEQRES 8 A 327 SER GLU LEU LYS VAL LEU SER TYR LEU GLY ASN HIS GLU SEQRES 9 A 327 ASN ILE VAL ASN LEU LEU GLY ALA CYS THR HIS GLY GLY SEQRES 10 A 327 PRO THR LEU VAL ILE THR GLU TYR CYS CYS TYR GLY ASP SEQRES 11 A 327 LEU LEU ASN PHE LEU ARG ARG LYS ARG ASP GLU PHE VAL SEQRES 12 A 327 PRO TYR LYS VAL ALA PRO GLU ASP LEU TYR LYS ASP PHE SEQRES 13 A 327 LEU THR LEU GLU HIS LEU LEU SER PHE SER TYR GLN VAL SEQRES 14 A 327 ALA LYS GLY MET ALA PHE LEU ALA SER LYS ASN CYS ILE SEQRES 15 A 327 HIS ARG ASP LEU ALA ALA ARG ASN ILE LEU LEU THR HIS SEQRES 16 A 327 GLY ASN ILE THR LYS ILE CYS ASP PHE GLY LEU ALA ARG SEQRES 17 A 327 ASP ILE LYS ASN ASP SER ASN TYR VAL ASP LYS GLY ASN SEQRES 18 A 327 ALA ARG LEU PRO VAL LYS TRP MET ALA PRO GLU SER ILE SEQRES 19 A 327 PHE ASN SER VAL TYR THR PHE GLU SER ASP VAL TRP SER SEQRES 20 A 327 TYR GLY ILE PHE LEU TRP GLU LEU PHE SER LEU GLY SER SEQRES 21 A 327 SER PRO TYR PRO GLY MET PRO VAL ASP SER LYS PHE TYR SEQRES 22 A 327 LYS MET ILE LYS GLU GLY PHE ARG MET SER SER PRO GLU SEQRES 23 A 327 TYR ALA PRO ALA GLU MET TYR ASP ILE MET LYS THR CYS SEQRES 24 A 327 TRP ASP ALA ASP PRO ASP LYS ARG PRO THR PHE LYS GLN SEQRES 25 A 327 ILE VAL GLN ASP ILE GLU LYS GLN ILE SER GLU SER THR SEQRES 26 A 327 ASN HIS HET B49 A1001 29 HET EDO A1002 4 HET EDO A1003 4 HET CL A1004 1 HETNAM B49 N-[2-(DIETHYLAMINO)ETHYL]-5-[(Z)-(5-FLUORO-2-OXO-1,2- HETNAM 2 B49 DIHYDRO-3H-INDOL-3-YLIDENE)METHYL]-2,4-DIMETHYL-1H- HETNAM 3 B49 PYRROLE-3-CARBO XAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN B49 SUNITINIB HETSYN EDO ETHYLENE GLYCOL FORMUL 2 B49 C22 H27 F N4 O2 FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 CL CL 1- FORMUL 6 HOH *197(H2 O) HELIX 1 AA1 ASP A 572 LEU A 576 5 5 HELIX 2 AA2 ASP A 579 GLU A 583 5 5 HELIX 3 AA3 PRO A 585 ASN A 587 5 3 HELIX 4 AA4 HIS A 630 GLY A 648 1 19 HELIX 5 AA5 LEU A 678 ARG A 686 1 9 HELIX 6 AA6 ASP A 687 PHE A 689 5 3 HELIX 7 AA7 THR A 765 LYS A 786 1 22 HELIX 8 AA8 ALA A 794 ARG A 796 5 3 HELIX 9 AA9 HIS A 802 ASN A 804 5 3 HELIX 10 AB1 PHE A 811 ARG A 815 5 5 HELIX 11 AB2 PRO A 832 MET A 836 5 5 HELIX 12 AB3 ALA A 837 SER A 844 1 8 HELIX 13 AB4 THR A 847 SER A 864 1 18 HELIX 14 AB5 ASP A 876 GLU A 885 1 10 HELIX 15 AB6 PRO A 896 TRP A 907 1 12 HELIX 16 AB7 ASP A 910 ARG A 914 5 5 HELIX 17 AB8 THR A 916 SER A 931 1 16 SHEET 1 AA1 3 TYR A 568 TYR A 570 0 SHEET 2 AA1 3 LYS A 558 GLU A 562 -1 N GLU A 561 O SER A 569 SHEET 3 AA1 3 CYS A 788 ILE A 789 -1 O ILE A 789 N LYS A 558 SHEET 1 AA2 5 LEU A 589 ALA A 597 0 SHEET 2 AA2 5 GLY A 601 ALA A 608 -1 O GLU A 605 N GLY A 592 SHEET 3 AA2 5 MET A 618 LEU A 625 -1 O VAL A 622 N VAL A 604 SHEET 4 AA2 5 LEU A 667 GLU A 671 -1 O THR A 670 N ALA A 621 SHEET 5 AA2 5 LEU A 656 CYS A 660 -1 N LEU A 657 O ILE A 669 SHEET 1 AA3 3 GLY A 676 ASP A 677 0 SHEET 2 AA3 3 ILE A 798 THR A 801 -1 O LEU A 800 N GLY A 676 SHEET 3 AA3 3 ILE A 805 ILE A 808 -1 O LYS A 807 N LEU A 799 SHEET 1 AA4 2 VAL A 824 LYS A 826 0 SHEET 2 AA4 2 ALA A 829 LEU A 831 -1 O ALA A 829 N LYS A 826 CRYST1 97.770 69.820 55.930 90.00 117.00 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010228 0.000000 0.005211 0.00000 SCALE2 0.000000 0.014323 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020067 0.00000 CONECT 2427 2439 CONECT 2428 2429 2432 CONECT 2429 2428 2440 CONECT 2430 2432 2433 CONECT 2431 2437 2441 2442 CONECT 2432 2428 2430 2448 CONECT 2433 2430 2434 2440 CONECT 2434 2433 2435 2438 CONECT 2435 2434 2444 2446 CONECT 2436 2442 2445 2447 CONECT 2437 2431 CONECT 2438 2434 2441 CONECT 2439 2427 2442 2443 CONECT 2440 2429 2433 2444 CONECT 2441 2431 2438 2443 CONECT 2442 2431 2436 2439 CONECT 2443 2439 2441 CONECT 2444 2435 2440 CONECT 2445 2436 2449 CONECT 2446 2435 CONECT 2447 2436 CONECT 2448 2432 CONECT 2449 2445 2450 CONECT 2450 2449 2451 CONECT 2451 2450 2452 2453 CONECT 2452 2451 2455 CONECT 2453 2451 2454 CONECT 2454 2453 CONECT 2455 2452 CONECT 2456 2457 2458 CONECT 2457 2456 CONECT 2458 2456 2459 CONECT 2459 2458 CONECT 2460 2461 2462 CONECT 2461 2460 CONECT 2462 2460 2463 CONECT 2463 2462 MASTER 472 0 4 17 13 0 0 6 2611 1 37 26 END