HEADER TRANSFERASE 15-FEB-24 8S15 TITLE C-KIT KINASE DOMAIN IN COMPLEX WITH NINTEDANIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAST/STEM CELL GROWTH FACTOR RECEPTOR KIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SCFR,PIEBALD TRAIT PROTEIN,PBT,PROTO-ONCOGENE C-KIT, COMPND 5 TYROSINE-PROTEIN KINASE KIT,P145 C-KIT,V-KIT HARDY-ZUCKERMAN 4 FELINE COMPND 6 SARCOMA VIRAL ONCOGENE HOMOLOG; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIT, SCFR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS STEM CELL FACTOR RECEPTOR, GIST, NINTEDANIB, REPURPOSING, INHIBITOR, KEYWDS 2 CANCER, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.TEUBER,S.B.KLEINBOELTING,M.P.MUELLER,D.RAUH REVDAT 1 03-SEP-25 8S15 0 JRNL AUTH A.TEUBER,J.NIGGENABER,S.B.KLEINBOELTING,I.LANDEL,J.WARMUTH, JRNL AUTH 2 D.BUSICK,M.P.MUELLER,S.BAUER,D.RAUH JRNL TITL C-KIT KINASE DOMAIN IN COMPLEX WITH NINTEDANIB JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 852 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8200 - 4.3600 1.00 2976 157 0.1997 0.2273 REMARK 3 2 4.3600 - 3.4600 1.00 2716 143 0.1853 0.2185 REMARK 3 3 3.4600 - 3.0200 1.00 2640 139 0.2510 0.3070 REMARK 3 4 3.0200 - 2.7500 1.00 2636 139 0.2668 0.2997 REMARK 3 5 2.7500 - 2.5500 1.00 2602 138 0.2896 0.4023 REMARK 3 6 2.5500 - 2.4000 1.00 2584 136 0.2839 0.3295 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.289 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.967 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2581 REMARK 3 ANGLE : 0.511 3502 REMARK 3 CHIRALITY : 0.040 372 REMARK 3 PLANARITY : 0.004 443 REMARK 3 DIHEDRAL : 12.816 928 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 580 THROUGH 677 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.7310 34.8851 19.6780 REMARK 3 T TENSOR REMARK 3 T11: 0.5401 T22: 0.3018 REMARK 3 T33: 0.4547 T12: -0.1087 REMARK 3 T13: -0.0037 T23: -0.0410 REMARK 3 L TENSOR REMARK 3 L11: 3.3198 L22: 4.0820 REMARK 3 L33: 4.2389 L12: -0.8592 REMARK 3 L13: 0.7963 L23: 0.1451 REMARK 3 S TENSOR REMARK 3 S11: -0.1239 S12: -0.1949 S13: 0.2968 REMARK 3 S21: -0.0851 S22: -0.1168 S23: 0.2698 REMARK 3 S31: -0.6416 S32: -0.1587 S33: 0.2286 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 678 THROUGH 765 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.0759 14.2590 -0.5457 REMARK 3 T TENSOR REMARK 3 T11: 0.6719 T22: 0.5943 REMARK 3 T33: 0.5209 T12: -0.0373 REMARK 3 T13: -0.1199 T23: -0.0688 REMARK 3 L TENSOR REMARK 3 L11: 2.0739 L22: 4.8334 REMARK 3 L33: 3.9292 L12: 0.5402 REMARK 3 L13: 0.5829 L23: 4.3202 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: 0.2632 S13: 0.0038 REMARK 3 S21: -0.0373 S22: -0.3250 S23: 0.5946 REMARK 3 S31: 0.8191 S32: -1.5293 S33: 0.4067 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 766 THROUGH 837 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.3261 16.8832 19.4758 REMARK 3 T TENSOR REMARK 3 T11: 0.4872 T22: 0.3429 REMARK 3 T33: 0.4230 T12: -0.0626 REMARK 3 T13: 0.0124 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 2.4666 L22: 3.8009 REMARK 3 L33: 2.2061 L12: 0.4490 REMARK 3 L13: 0.3584 L23: -0.0679 REMARK 3 S TENSOR REMARK 3 S11: 0.0115 S12: -0.0656 S13: 0.2778 REMARK 3 S21: -0.0247 S22: 0.0262 S23: 0.3563 REMARK 3 S31: -0.1390 S32: -0.1298 S33: -0.0377 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 838 THROUGH 929 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.7598 3.6270 19.5788 REMARK 3 T TENSOR REMARK 3 T11: 0.5940 T22: 0.3013 REMARK 3 T33: 0.4411 T12: -0.0808 REMARK 3 T13: 0.0293 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 2.2253 L22:2.8735418 REMARK 3 L33: 3.2790 L12: 0.1002 REMARK 3 L13: 0.1078 L23: -0.2545 REMARK 3 S TENSOR REMARK 3 S11: -0.1076 S12: 0.0913 S13: -0.0059 REMARK 3 S21: -0.2855 S22: 0.0162 S23: -0.0311 REMARK 3 S31: 0.3484 S32: -0.0757 S33: 0.1423 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 556 THROUGH 579 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0155 16.8929 37.2253 REMARK 3 T TENSOR REMARK 3 T11: 0.6451 T22: 0.5277 REMARK 3 T33: 0.5224 T12: -0.1472 REMARK 3 T13: 0.0286 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.0178 L22: 2.0420 REMARK 3 L33: 1.0307 L12: 0.2591 REMARK 3 L13: -0.2092 L23: -1.4929 REMARK 3 S TENSOR REMARK 3 S11: 0.1892 S12: -0.1647 S13: 0.0086 REMARK 3 S21: -0.2786 S22: -0.3496 S23: 0.1692 REMARK 3 S31: -0.0007 S32: 0.5328 S33: 0.0693 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8S15 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1292136595. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17038 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 46.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 36.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN CONCENTRATION: 6 MG/ML, 1 M REMARK 280 NA3-CITRATE, 100 MM HEPES, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 304.04667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 152.02333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 228.03500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 76.01167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 380.05833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 304.04667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 152.02333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 76.01167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 228.03500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 380.05833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 548 REMARK 465 SER A 549 REMARK 465 MET A 550 REMARK 465 PRO A 551 REMARK 465 MET A 552 REMARK 465 TYR A 553 REMARK 465 ASN A 564 REMARK 465 GLY A 565 REMARK 465 ASN A 566 REMARK 465 ALA A 755 REMARK 465 GLU A 930 REMARK 465 SER A 931 REMARK 465 THR A 932 REMARK 465 ASN A 933 REMARK 465 HIS A 934 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 554 CG CD OE1 OE2 REMARK 470 GLU A 562 CG CD OE1 OE2 REMARK 470 SER A 563 OG REMARK 470 ASN A 567 CG OD1 ND2 REMARK 470 LYS A 593 CG CD CE NZ REMARK 470 LYS A 613 CG CD CE NZ REMARK 470 SER A 614 OG REMARK 470 ASP A 615 CG OD1 OD2 REMARK 470 VAL A 694 CG1 CG2 REMARK 470 LYS A 761 CG CD CE NZ REMARK 470 LYS A 818 CG CD CE NZ REMARK 470 ASN A 819 CG OD1 ND2 REMARK 470 LYS A 926 CG CD CE NZ REMARK 470 SER A 929 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 688 62.09 -119.92 REMARK 500 TYR A 760 60.80 -111.97 REMARK 500 ARG A 791 -3.61 68.95 REMARK 500 ASP A 792 46.99 -151.90 REMARK 500 REMARK 500 REMARK: NULL DBREF 8S15 A 551 687 UNP P10721 KIT_HUMAN 551 687 DBREF 8S15 A 766 934 UNP P10721 KIT_HUMAN 766 934 SEQADV 8S15 GLY A 548 UNP P10721 EXPRESSION TAG SEQADV 8S15 SER A 549 UNP P10721 EXPRESSION TAG SEQADV 8S15 MET A 550 UNP P10721 EXPRESSION TAG SEQADV 8S15 SER A 563 UNP P10721 ILE 563 ENGINEERED MUTATION SEQADV 8S15 SER A 569 UNP P10721 VAL 569 ENGINEERED MUTATION SEQADV 8S15 GLN A 609 UNP P10721 TYR 609 ENGINEERED MUTATION SEQADV 8S15 SER A 631 UNP P10721 LEU 631 ENGINEERED MUTATION SEQADV 8S15 GLU A 651 UNP P10721 MET 651 ENGINEERED MUTATION SEQADV 8S15 HIS A 662 UNP P10721 ILE 662 ENGINEERED MUTATION SEQADV 8S15 GLU A 688 UNP P10721 LINKER SEQADV 8S15 PHE A 689 UNP P10721 LINKER SEQADV 8S15 VAL A 690 UNP P10721 LINKER SEQADV 8S15 PRO A 691 UNP P10721 LINKER SEQADV 8S15 TYR A 692 UNP P10721 LINKER SEQADV 8S15 LYS A 693 UNP P10721 LINKER SEQADV 8S15 VAL A 694 UNP P10721 LINKER SEQADV 8S15 ALA A 755 UNP P10721 LINKER SEQADV 8S15 PRO A 756 UNP P10721 LINKER SEQADV 8S15 GLU A 757 UNP P10721 LINKER SEQADV 8S15 ASP A 758 UNP P10721 LINKER SEQADV 8S15 LEU A 759 UNP P10721 LINKER SEQADV 8S15 TYR A 760 UNP P10721 LINKER SEQADV 8S15 LYS A 761 UNP P10721 LINKER SEQADV 8S15 ASP A 762 UNP P10721 LINKER SEQADV 8S15 PHE A 763 UNP P10721 LINKER SEQADV 8S15 LEU A 764 UNP P10721 LINKER SEQADV 8S15 THR A 765 UNP P10721 LINKER SEQADV 8S15 HIS A 768 UNP P10721 ASP 768 ENGINEERED MUTATION SEQADV 8S15 ASN A 804 UNP P10721 ARG 804 ENGINEERED MUTATION SEQADV 8S15 ASP A 825 UNP P10721 VAL 825 ENGINEERED MUTATION SEQADV 8S15 SER A 844 UNP P10721 CYS 844 ENGINEERED MUTATION SEQADV 8S15 SER A 890 UNP P10721 LEU 890 ENGINEERED MUTATION SEQADV 8S15 TYR A 894 UNP P10721 HIS 894 ENGINEERED MUTATION SEQADV 8S15 ASP A 912 UNP P10721 LEU 912 ENGINEERED MUTATION SEQADV 8S15 ASP A 923 UNP P10721 LEU 923 ENGINEERED MUTATION SEQRES 1 A 327 GLY SER MET PRO MET TYR GLU VAL GLN TRP LYS VAL VAL SEQRES 2 A 327 GLU GLU SER ASN GLY ASN ASN TYR SER TYR ILE ASP PRO SEQRES 3 A 327 THR GLN LEU PRO TYR ASP HIS LYS TRP GLU PHE PRO ARG SEQRES 4 A 327 ASN ARG LEU SER PHE GLY LYS THR LEU GLY ALA GLY ALA SEQRES 5 A 327 PHE GLY LYS VAL VAL GLU ALA THR ALA GLN GLY LEU ILE SEQRES 6 A 327 LYS SER ASP ALA ALA MET THR VAL ALA VAL LYS MET LEU SEQRES 7 A 327 LYS PRO SER ALA HIS SER THR GLU ARG GLU ALA LEU MET SEQRES 8 A 327 SER GLU LEU LYS VAL LEU SER TYR LEU GLY ASN HIS GLU SEQRES 9 A 327 ASN ILE VAL ASN LEU LEU GLY ALA CYS THR HIS GLY GLY SEQRES 10 A 327 PRO THR LEU VAL ILE THR GLU TYR CYS CYS TYR GLY ASP SEQRES 11 A 327 LEU LEU ASN PHE LEU ARG ARG LYS ARG ASP GLU PHE VAL SEQRES 12 A 327 PRO TYR LYS VAL ALA PRO GLU ASP LEU TYR LYS ASP PHE SEQRES 13 A 327 LEU THR LEU GLU HIS LEU LEU SER PHE SER TYR GLN VAL SEQRES 14 A 327 ALA LYS GLY MET ALA PHE LEU ALA SER LYS ASN CYS ILE SEQRES 15 A 327 HIS ARG ASP LEU ALA ALA ARG ASN ILE LEU LEU THR HIS SEQRES 16 A 327 GLY ASN ILE THR LYS ILE CYS ASP PHE GLY LEU ALA ARG SEQRES 17 A 327 ASP ILE LYS ASN ASP SER ASN TYR VAL ASP LYS GLY ASN SEQRES 18 A 327 ALA ARG LEU PRO VAL LYS TRP MET ALA PRO GLU SER ILE SEQRES 19 A 327 PHE ASN SER VAL TYR THR PHE GLU SER ASP VAL TRP SER SEQRES 20 A 327 TYR GLY ILE PHE LEU TRP GLU LEU PHE SER LEU GLY SER SEQRES 21 A 327 SER PRO TYR PRO GLY MET PRO VAL ASP SER LYS PHE TYR SEQRES 22 A 327 LYS MET ILE LYS GLU GLY PHE ARG MET SER SER PRO GLU SEQRES 23 A 327 TYR ALA PRO ALA GLU MET TYR ASP ILE MET LYS THR CYS SEQRES 24 A 327 TRP ASP ALA ASP PRO ASP LYS ARG PRO THR PHE LYS GLN SEQRES 25 A 327 ILE VAL GLN ASP ILE GLU LYS GLN ILE SER GLU SER THR SEQRES 26 A 327 ASN HIS HET XIN A1001 40 HETNAM XIN METHYL (3Z)-3-{[(4-{METHYL[(4-METHYLPIPERAZIN-1-YL) HETNAM 2 XIN ACETYL]AMINO}PHENYL)AMINO](PHENYL)METHYLIDENE}-2-OXO- HETNAM 3 XIN 2,3-DIHYDRO-1H-INDOLE-6-CARBOXYLATE FORMUL 2 XIN C31 H33 N5 O4 FORMUL 3 HOH *43(H2 O) HELIX 1 AA1 ASP A 572 LEU A 576 5 5 HELIX 2 AA2 ASP A 579 GLU A 583 5 5 HELIX 3 AA3 PRO A 585 ASN A 587 5 3 HELIX 4 AA4 HIS A 630 GLY A 648 1 19 HELIX 5 AA5 LEU A 678 LYS A 685 1 8 HELIX 6 AA6 PRO A 756 LYS A 761 5 6 HELIX 7 AA7 LEU A 766 LYS A 786 1 21 HELIX 8 AA8 ALA A 794 ARG A 796 5 3 HELIX 9 AA9 PHE A 811 ARG A 815 5 5 HELIX 10 AB1 ASP A 816 ASP A 820 5 5 HELIX 11 AB2 PRO A 832 MET A 836 5 5 HELIX 12 AB3 ALA A 837 SER A 844 1 8 HELIX 13 AB4 THR A 847 SER A 864 1 18 HELIX 14 AB5 ASP A 876 GLU A 885 1 10 HELIX 15 AB6 PRO A 896 TRP A 907 1 12 HELIX 16 AB7 ASP A 910 ARG A 914 5 5 HELIX 17 AB8 THR A 916 SER A 929 1 14 SHEET 1 AA1 5 LEU A 589 ALA A 597 0 SHEET 2 AA1 5 GLY A 601 GLN A 609 -1 O GLU A 605 N GLY A 592 SHEET 3 AA1 5 ALA A 617 LEU A 625 -1 O VAL A 620 N ALA A 606 SHEET 4 AA1 5 LEU A 667 GLU A 671 -1 O THR A 670 N ALA A 621 SHEET 5 AA1 5 LEU A 656 CYS A 660 -1 N LEU A 657 O ILE A 669 SHEET 1 AA2 3 GLY A 676 ASP A 677 0 SHEET 2 AA2 3 ILE A 798 THR A 801 -1 O LEU A 800 N GLY A 676 SHEET 3 AA2 3 ILE A 805 ILE A 808 -1 O LYS A 807 N LEU A 799 SHEET 1 AA3 2 PHE A 689 VAL A 690 0 SHEET 2 AA3 2 LEU A 764 THR A 765 1 O LEU A 764 N VAL A 690 SHEET 1 AA4 2 VAL A 824 LYS A 826 0 SHEET 2 AA4 2 ALA A 829 LEU A 831 -1 O LEU A 831 N VAL A 824 CRYST1 54.350 54.350 456.070 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018399 0.010623 0.000000 0.00000 SCALE2 0.000000 0.021246 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002193 0.00000 CONECT 2474 2475 2476 2477 CONECT 2475 2474 2478 2479 CONECT 2476 2474 2480 2507 CONECT 2477 2474 2512 2513 CONECT 2478 2475 2481 2512 CONECT 2479 2475 2482 CONECT 2480 2476 2508 2510 CONECT 2481 2478 2484 CONECT 2482 2479 2484 CONECT 2483 2487 2506 2507 CONECT 2484 2481 2482 2488 CONECT 2485 2509 2510 CONECT 2486 2508 2509 CONECT 2487 2483 2489 CONECT 2488 2484 2491 2492 CONECT 2489 2487 2493 CONECT 2490 2493 2506 CONECT 2491 2488 2511 CONECT 2492 2488 CONECT 2493 2489 2490 2505 CONECT 2494 2496 2502 2505 CONECT 2495 2505 CONECT 2496 2494 2503 CONECT 2497 2499 2503 CONECT 2498 2500 2503 CONECT 2499 2497 2504 CONECT 2500 2498 2504 CONECT 2501 2504 CONECT 2502 2494 CONECT 2503 2496 2497 2498 CONECT 2504 2499 2500 2501 CONECT 2505 2493 2494 2495 CONECT 2506 2483 2490 CONECT 2507 2476 2483 CONECT 2508 2480 2486 CONECT 2509 2485 2486 CONECT 2510 2480 2485 CONECT 2511 2491 CONECT 2512 2477 2478 CONECT 2513 2477 MASTER 368 0 1 17 12 0 0 6 2544 1 40 26 END