HEADER ENDOCYTOSIS 25-FEB-24 8S5R TITLE STRUCTURE OF THE CHLAMYDIA PNEUMONIAE EFFECTOR SEMD COMPND MOL_ID: 1; COMPND 2 MOLECULE: EFFECTOR SEMD; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDIA; SOURCE 3 ORGANISM_TAXID: 810; SOURCE 4 GENE: CP_0070, CPN_0677, BN1224_CV15_C_01450, BN1224_GID_A_07040, SOURCE 5 BN1224_H12_EK_00710, BN1224_MUL2216_F_02260, BN1224_PANOLA_J_01100, SOURCE 6 BN1224_PB1_B_06920, BN1224_U1271_C_05340, BN1224_WIEN2_G_03310, SOURCE 7 BN1224_YK41_BR_01220, CWL029C_D_02120; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EFFECTOR EFFECTOR PROTEIN, ENDOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR F.KOCHER,V.APPLEGATE,J.REINERS,A.PORT,D.SPONA,S.HAENSCH,S.H.SMITS, AUTHOR 2 J.HEGEMANN,K.MOELLEKEN REVDAT 1 07-AUG-24 8S5R 0 JRNL AUTH F.KOCHER,V.APPLEGATE,J.REINERS,A.PORT,D.SPONA,S.HAENSCH, JRNL AUTH 2 S.H.SMITS,J.HEGEMANN,K.MOELLEKEN JRNL TITL STRUCTURE OF THE CHLAMYDIA PNEUMONIAE EFFECTOR SEMD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 51456 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.520 REMARK 3 FREE R VALUE TEST SET COUNT : 2838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 5.7000 0.94 2446 141 0.1929 0.2029 REMARK 3 2 5.7000 - 4.5200 0.94 2448 143 0.1871 0.2359 REMARK 3 3 4.5200 - 3.9500 0.90 2315 137 0.1694 0.2422 REMARK 3 4 3.9500 - 3.5900 0.90 2360 134 0.1930 0.2569 REMARK 3 5 3.5900 - 3.3300 0.93 2385 141 0.2054 0.2913 REMARK 3 6 3.3300 - 3.1400 0.92 2372 144 0.2199 0.3036 REMARK 3 7 3.1400 - 2.9800 0.94 2488 149 0.2469 0.2670 REMARK 3 8 2.9800 - 2.8500 0.94 2445 136 0.2355 0.3281 REMARK 3 9 2.8500 - 2.7400 0.93 2392 133 0.2408 0.3036 REMARK 3 10 2.7400 - 2.6500 0.95 2470 144 0.2325 0.3426 REMARK 3 11 2.6500 - 2.5600 0.96 2471 147 0.2360 0.2995 REMARK 3 12 2.5600 - 2.4900 0.96 2472 147 0.2394 0.3065 REMARK 3 13 2.4900 - 2.4200 0.94 2509 146 0.2366 0.3192 REMARK 3 14 2.4200 - 2.3700 0.94 2402 141 0.2475 0.2867 REMARK 3 15 2.3700 - 2.3100 0.92 2444 140 0.2567 0.2911 REMARK 3 16 2.3100 - 2.2600 0.95 2403 137 0.2853 0.3175 REMARK 3 17 2.2600 - 2.2200 0.90 2348 139 0.3319 0.4454 REMARK 3 18 2.2200 - 2.1800 0.96 2489 145 0.2686 0.3566 REMARK 3 19 2.1800 - 2.1400 0.96 2441 148 0.2727 0.3022 REMARK 3 20 2.1400 - 2.1000 0.96 2518 146 0.2792 0.3295 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.279 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.317 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3621 REMARK 3 ANGLE : 1.193 4914 REMARK 3 CHIRALITY : 0.081 565 REMARK 3 PLANARITY : 0.010 643 REMARK 3 DIHEDRAL : 4.461 495 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 12 through 43 or REMARK 3 resid 45 through 156 or resid 158 through REMARK 3 247)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 12 through 43 or REMARK 3 resid 45 through 148 or resid 151 through REMARK 3 156 or resid 158 through 247)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8S5R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1292136868. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.916771 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51456 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 45.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID (PH 2.5), 20% (W/V) REMARK 280 PEG 6000 (PH 4), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -74 REMARK 465 GLY B -73 REMARK 465 LYS B -72 REMARK 465 LYS B -71 REMARK 465 SER B -70 REMARK 465 PRO B -69 REMARK 465 ASP B -68 REMARK 465 SER B -67 REMARK 465 SER B -66 REMARK 465 GLN B -65 REMARK 465 GLY B -64 REMARK 465 ALA B -63 REMARK 465 SER B -62 REMARK 465 GLY B -61 REMARK 465 PRO B -60 REMARK 465 ALA B -59 REMARK 465 MET B -58 REMARK 465 GLN B -57 REMARK 465 SER B -56 REMARK 465 PRO B -55 REMARK 465 SER B -54 REMARK 465 GLY B -53 REMARK 465 PRO B -52 REMARK 465 THR B -51 REMARK 465 ILE B -50 REMARK 465 ARG B -49 REMARK 465 PRO B -48 REMARK 465 THR B -47 REMARK 465 ARG B -46 REMARK 465 PRO B -45 REMARK 465 ALA B -44 REMARK 465 PRO B -43 REMARK 465 PRO B -42 REMARK 465 PRO B -41 REMARK 465 PRO B -40 REMARK 465 THR B -39 REMARK 465 THR B -38 REMARK 465 GLY B -37 REMARK 465 GLY B -36 REMARK 465 ALA B -35 REMARK 465 ASN B -34 REMARK 465 ALA B -33 REMARK 465 LYS B -32 REMARK 465 ARG B -31 REMARK 465 PRO B -30 REMARK 465 ALA B -29 REMARK 465 THR B -28 REMARK 465 HIS B -27 REMARK 465 GLY B -26 REMARK 465 LYS B -25 REMARK 465 GLY B -24 REMARK 465 ARG B -23 REMARK 465 ALA B -22 REMARK 465 PRO B -21 REMARK 465 GLN B -20 REMARK 465 PRO B -19 REMARK 465 PRO B -18 REMARK 465 THR B -17 REMARK 465 ALA B -16 REMARK 465 GLY B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 SER B -12 REMARK 465 GLY B -11 REMARK 465 SER B -10 REMARK 465 GLU B -9 REMARK 465 GLN B -8 REMARK 465 PRO B -7 REMARK 465 THR B -6 REMARK 465 ALA B -5 REMARK 465 MET B -4 REMARK 465 SER B -3 REMARK 465 SER B -2 REMARK 465 GLU B -1 REMARK 465 VAL B 0 REMARK 465 ALA B 1 REMARK 465 LYS B 2 REMARK 465 LEU B 3 REMARK 465 VAL B 4 REMARK 465 SER B 5 REMARK 465 GLU B 6 REMARK 465 LEU B 7 REMARK 465 LYS B 8 REMARK 465 ASP B 9 REMARK 465 ALA B 10 REMARK 465 GLY B 73 REMARK 465 PRO B 74 REMARK 465 VAL B 75 REMARK 465 PRO B 76 REMARK 465 GLN B 77 REMARK 465 ALA B 78 REMARK 465 MET A -74 REMARK 465 GLY A -73 REMARK 465 LYS A -72 REMARK 465 LYS A -71 REMARK 465 SER A -70 REMARK 465 PRO A -69 REMARK 465 ASP A -68 REMARK 465 SER A -67 REMARK 465 SER A -66 REMARK 465 GLN A -65 REMARK 465 GLY A -64 REMARK 465 ALA A -63 REMARK 465 SER A -62 REMARK 465 GLY A -61 REMARK 465 PRO A -60 REMARK 465 ALA A -59 REMARK 465 MET A -58 REMARK 465 GLN A -57 REMARK 465 SER A -56 REMARK 465 PRO A -55 REMARK 465 SER A -54 REMARK 465 GLY A -53 REMARK 465 PRO A -52 REMARK 465 THR A -51 REMARK 465 ILE A -50 REMARK 465 ARG A -49 REMARK 465 PRO A -48 REMARK 465 THR A -47 REMARK 465 ARG A -46 REMARK 465 PRO A -45 REMARK 465 ALA A -44 REMARK 465 PRO A -43 REMARK 465 PRO A -42 REMARK 465 PRO A -41 REMARK 465 PRO A -40 REMARK 465 THR A -39 REMARK 465 THR A -38 REMARK 465 GLY A -37 REMARK 465 GLY A -36 REMARK 465 ALA A -35 REMARK 465 ASN A -34 REMARK 465 ALA A -33 REMARK 465 LYS A -32 REMARK 465 ARG A -31 REMARK 465 PRO A -30 REMARK 465 ALA A -29 REMARK 465 THR A -28 REMARK 465 HIS A -27 REMARK 465 GLY A -26 REMARK 465 LYS A -25 REMARK 465 GLY A -24 REMARK 465 ARG A -23 REMARK 465 ALA A -22 REMARK 465 PRO A -21 REMARK 465 GLN A -20 REMARK 465 PRO A -19 REMARK 465 PRO A -18 REMARK 465 THR A -17 REMARK 465 ALA A -16 REMARK 465 GLY A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 SER A -12 REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 GLU A -9 REMARK 465 GLN A -8 REMARK 465 PRO A -7 REMARK 465 THR A -6 REMARK 465 ALA A -5 REMARK 465 MET A -4 REMARK 465 SER A -3 REMARK 465 SER A -2 REMARK 465 GLU A -1 REMARK 465 VAL A 0 REMARK 465 ALA A 1 REMARK 465 LYS A 2 REMARK 465 LEU A 3 REMARK 465 VAL A 4 REMARK 465 SER A 5 REMARK 465 GLU A 6 REMARK 465 LEU A 7 REMARK 465 LYS A 8 REMARK 465 ASP A 9 REMARK 465 ALA A 10 REMARK 465 VAL A 11 REMARK 465 GLY A 73 REMARK 465 PRO A 74 REMARK 465 VAL A 75 REMARK 465 PRO A 76 REMARK 465 GLN A 77 REMARK 465 ALA A 78 REMARK 465 ASP A 149 REMARK 465 ASP A 150 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL B 11 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 247 O HOH A 301 1.83 REMARK 500 O HOH B 302 O HOH B 351 1.91 REMARK 500 O HOH A 355 O HOH A 382 1.96 REMARK 500 O ARG B 214 OE1 GLU B 218 1.97 REMARK 500 O HOH B 316 O HOH B 341 1.98 REMARK 500 O HOH B 305 O HOH B 310 2.01 REMARK 500 O THR A 156 O HOH A 302 2.05 REMARK 500 O HOH A 366 O HOH A 385 2.05 REMARK 500 O HOH B 400 O HOH B 409 2.05 REMARK 500 O HOH B 380 O HOH B 389 2.06 REMARK 500 O GLY A 205 O HOH A 303 2.08 REMARK 500 O HOH A 318 O HOH A 397 2.11 REMARK 500 OG SER B 68 O HOH B 301 2.11 REMARK 500 O HOH A 348 O HOH A 392 2.12 REMARK 500 OD2 ASP B 47 O HOH B 302 2.14 REMARK 500 O HOH B 385 O HOH B 387 2.14 REMARK 500 NZ LYS B 36 O HOH B 303 2.15 REMARK 500 O HOH B 394 O HOH B 400 2.15 REMARK 500 NH2 ARG A 58 O HOH A 304 2.17 REMARK 500 O LEU A 70 O HOH A 305 2.17 REMARK 500 OG1 THR B 239 O HOH B 304 2.18 REMARK 500 OD2 ASP A 154 O HOH A 306 2.18 REMARK 500 O HOH B 309 O HOH B 310 2.19 REMARK 500 O ILE B 71 O HOH B 305 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 399 O HOH A 391 1556 1.99 REMARK 500 O HOH B 386 O HOH A 367 1545 2.01 REMARK 500 O HOH B 390 O HOH B 391 1655 2.02 REMARK 500 O HOH B 394 O HOH A 396 1556 2.13 REMARK 500 O HOH B 375 O HOH B 391 1655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 218 CD GLU B 218 OE1 0.068 REMARK 500 LYS A 24 CE LYS A 24 NZ -0.182 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 14 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 GLN A 61 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 GLN A 61 CA - CB - CG ANGL. DEV. = 18.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 104 69.66 -151.41 REMARK 500 SER B 230 109.43 -166.20 REMARK 500 ASN A 104 74.03 -155.69 REMARK 500 SER A 230 110.31 -165.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 406 DISTANCE = 5.83 ANGSTROMS DBREF 8S5R B -73 246 UNP Q9Z7M7 Q9Z7M7_CHLPN 67 381 DBREF 8S5R A -73 246 UNP Q9Z7M7 Q9Z7M7_CHLPN 67 381 SEQADV 8S5R MET B -74 UNP Q9Z7M7 INITIATING METHIONINE SEQADV 8S5R LEU B 7 UNP Q9Z7M7 INSERTION SEQADV 8S5R LYS B 8 UNP Q9Z7M7 INSERTION SEQADV 8S5R ASP B 9 UNP Q9Z7M7 INSERTION SEQADV 8S5R ALA B 10 UNP Q9Z7M7 INSERTION SEQADV 8S5R VAL B 11 UNP Q9Z7M7 INSERTION SEQADV 8S5R PRO B 74 UNP Q9Z7M7 THR 209 CONFLICT SEQADV 8S5R VAL B 75 UNP Q9Z7M7 SER 210 CONFLICT SEQADV 8S5R PRO B 76 UNP Q9Z7M7 SER 211 CONFLICT SEQADV 8S5R GLN B 77 UNP Q9Z7M7 THR 212 CONFLICT SEQADV 8S5R ALA B 78 UNP Q9Z7M7 GLY 213 CONFLICT SEQADV 8S5R ALA B 247 UNP Q9Z7M7 EXPRESSION TAG SEQADV 8S5R MET A -74 UNP Q9Z7M7 INITIATING METHIONINE SEQADV 8S5R LEU A 7 UNP Q9Z7M7 INSERTION SEQADV 8S5R LYS A 8 UNP Q9Z7M7 INSERTION SEQADV 8S5R ASP A 9 UNP Q9Z7M7 INSERTION SEQADV 8S5R ALA A 10 UNP Q9Z7M7 INSERTION SEQADV 8S5R VAL A 11 UNP Q9Z7M7 INSERTION SEQADV 8S5R PRO A 74 UNP Q9Z7M7 THR 209 CONFLICT SEQADV 8S5R VAL A 75 UNP Q9Z7M7 SER 210 CONFLICT SEQADV 8S5R PRO A 76 UNP Q9Z7M7 SER 211 CONFLICT SEQADV 8S5R GLN A 77 UNP Q9Z7M7 THR 212 CONFLICT SEQADV 8S5R ALA A 78 UNP Q9Z7M7 GLY 213 CONFLICT SEQADV 8S5R ALA A 247 UNP Q9Z7M7 EXPRESSION TAG SEQRES 1 B 322 MET GLY LYS LYS SER PRO ASP SER SER GLN GLY ALA SER SEQRES 2 B 322 GLY PRO ALA MET GLN SER PRO SER GLY PRO THR ILE ARG SEQRES 3 B 322 PRO THR ARG PRO ALA PRO PRO PRO PRO THR THR GLY GLY SEQRES 4 B 322 ALA ASN ALA LYS ARG PRO ALA THR HIS GLY LYS GLY ARG SEQRES 5 B 322 ALA PRO GLN PRO PRO THR ALA GLY SER SER SER GLY SER SEQRES 6 B 322 GLU GLN PRO THR ALA MET SER SER GLU VAL ALA LYS LEU SEQRES 7 B 322 VAL SER GLU LEU LYS ASP ALA VAL LEU LYS ASP ALA VAL SEQRES 8 B 322 HIS SER HIS ALA GLU SER GLN LYS VAL LEU LYS LYS VAL SEQRES 9 B 322 SER GLN GLU LEU GLN THR LYS TRP THR ASP TRP GLU ASN SEQRES 10 B 322 ASN ARG GLY PRO ASP TYR LEU LEU HIS GLY TYR ARG VAL SEQRES 11 B 322 ILE ALA ARG ALA LEU GLN GLN THR TYR THR GLU GLN SER SEQRES 12 B 322 MET LEU ILE GLU GLY PRO VAL PRO GLN ALA PRO VAL PRO SEQRES 13 B 322 GLN ALA VAL THR VAL ALA LYS ASP ALA VAL THR GLN THR SEQRES 14 B 322 VAL ARG GLY ALA ILE LYS ASN LEU GLU ASN PRO LYS PRO SEQRES 15 B 322 GLY ASN ASP PRO ASP GLY VAL LEU MET GLN VAL VAL ILE SEQRES 16 B 322 SER LEU GLY ILE GLU GLY PRO THR LEU ASP PRO GLY GLU SEQRES 17 B 322 SER ILE GLN ASN PHE LEU GLU THR ARG VAL SER ASP PHE SEQRES 18 B 322 GLY GLY ASP ASP SER ASP ILE ASP TYR THR SER ASP ILE SEQRES 19 B 322 ALA ARG LEU GLY SER ALA LEU ASP ARG VAL ARG GLU ASN SEQRES 20 B 322 HIS PRO ASN GLU MET PRO ARG ILE TRP ILE ALA LEU ALA SEQRES 21 B 322 ARG GLU LEU GLY ALA ALA VAL HIS SER HIS ALA THR SER SEQRES 22 B 322 VAL ARG ILE ALA ASN ALA GLY LYS ASN HIS THR ARG ASP SEQRES 23 B 322 VAL VAL ARG MET ALA ASN GLU SER SER ARG LEU LEU GLN SEQRES 24 B 322 GLY MET LYS VAL LEU SER VAL GLY ALA TRP ALA ASN THR SEQRES 25 B 322 MET THR VAL LEU ILE GLY ASP LEU PHE ALA SEQRES 1 A 322 MET GLY LYS LYS SER PRO ASP SER SER GLN GLY ALA SER SEQRES 2 A 322 GLY PRO ALA MET GLN SER PRO SER GLY PRO THR ILE ARG SEQRES 3 A 322 PRO THR ARG PRO ALA PRO PRO PRO PRO THR THR GLY GLY SEQRES 4 A 322 ALA ASN ALA LYS ARG PRO ALA THR HIS GLY LYS GLY ARG SEQRES 5 A 322 ALA PRO GLN PRO PRO THR ALA GLY SER SER SER GLY SER SEQRES 6 A 322 GLU GLN PRO THR ALA MET SER SER GLU VAL ALA LYS LEU SEQRES 7 A 322 VAL SER GLU LEU LYS ASP ALA VAL LEU LYS ASP ALA VAL SEQRES 8 A 322 HIS SER HIS ALA GLU SER GLN LYS VAL LEU LYS LYS VAL SEQRES 9 A 322 SER GLN GLU LEU GLN THR LYS TRP THR ASP TRP GLU ASN SEQRES 10 A 322 ASN ARG GLY PRO ASP TYR LEU LEU HIS GLY TYR ARG VAL SEQRES 11 A 322 ILE ALA ARG ALA LEU GLN GLN THR TYR THR GLU GLN SER SEQRES 12 A 322 MET LEU ILE GLU GLY PRO VAL PRO GLN ALA PRO VAL PRO SEQRES 13 A 322 GLN ALA VAL THR VAL ALA LYS ASP ALA VAL THR GLN THR SEQRES 14 A 322 VAL ARG GLY ALA ILE LYS ASN LEU GLU ASN PRO LYS PRO SEQRES 15 A 322 GLY ASN ASP PRO ASP GLY VAL LEU MET GLN VAL VAL ILE SEQRES 16 A 322 SER LEU GLY ILE GLU GLY PRO THR LEU ASP PRO GLY GLU SEQRES 17 A 322 SER ILE GLN ASN PHE LEU GLU THR ARG VAL SER ASP PHE SEQRES 18 A 322 GLY GLY ASP ASP SER ASP ILE ASP TYR THR SER ASP ILE SEQRES 19 A 322 ALA ARG LEU GLY SER ALA LEU ASP ARG VAL ARG GLU ASN SEQRES 20 A 322 HIS PRO ASN GLU MET PRO ARG ILE TRP ILE ALA LEU ALA SEQRES 21 A 322 ARG GLU LEU GLY ALA ALA VAL HIS SER HIS ALA THR SER SEQRES 22 A 322 VAL ARG ILE ALA ASN ALA GLY LYS ASN HIS THR ARG ASP SEQRES 23 A 322 VAL VAL ARG MET ALA ASN GLU SER SER ARG LEU LEU GLN SEQRES 24 A 322 GLY MET LYS VAL LEU SER VAL GLY ALA TRP ALA ASN THR SEQRES 25 A 322 MET THR VAL LEU ILE GLY ASP LEU PHE ALA FORMUL 3 HOH *216(H2 O) HELIX 1 AA1 LEU B 12 GLY B 45 1 34 HELIX 2 AA2 GLY B 45 ILE B 71 1 27 HELIX 3 AA3 PRO B 81 ASN B 104 1 24 HELIX 4 AA4 GLY B 113 GLY B 126 1 14 HELIX 5 AA5 PRO B 127 LEU B 129 5 3 HELIX 6 AA6 SER B 134 PHE B 146 1 13 HELIX 7 AA7 TYR B 155 HIS B 173 1 19 HELIX 8 AA8 GLU B 176 ASN B 203 1 28 HELIX 9 AA9 HIS B 208 SER B 230 1 23 HELIX 10 AB1 SER B 230 ASP B 244 1 15 HELIX 11 AB2 LYS A 13 ARG A 44 1 32 HELIX 12 AB3 GLY A 45 ILE A 71 1 27 HELIX 13 AB4 PRO A 81 ASN A 104 1 24 HELIX 14 AB5 GLY A 113 GLY A 126 1 14 HELIX 15 AB6 PRO A 127 LEU A 129 5 3 HELIX 16 AB7 SER A 134 PHE A 146 1 13 HELIX 17 AB8 TYR A 155 HIS A 173 1 19 HELIX 18 AB9 GLU A 176 ASN A 203 1 28 HELIX 19 AC1 HIS A 208 SER A 230 1 23 HELIX 20 AC2 SER A 230 LEU A 245 1 16 CRYST1 46.999 51.957 58.628 88.33 105.89 117.43 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021277 0.011045 0.007361 0.00000 SCALE2 0.000000 0.021685 0.002482 0.00000 SCALE3 0.000000 0.000000 0.017850 0.00000 MTRIX1 1 0.551977 0.826945 0.107161 -28.64602 1 MTRIX2 1 0.823340 -0.560843 0.086981 54.55422 1 MTRIX3 1 0.132029 0.040218 -0.990430 3.17935 1