HEADER OXIDOREDUCTASE 25-FEB-24 8S5S TITLE CRYSTAL STRUCTURE OF A SULFITE DEHYDROGENASE FROM THERMUS THERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTAITVE SULFITE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 GENE: TTHA1325; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS ELECTRON TRANSFER, SOR, MOLYBDOPTERINE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.DJEGHADER,T.SOULIMANE REVDAT 2 11-DEC-24 8S5S 1 JRNL REVDAT 1 27-NOV-24 8S5S 0 JRNL AUTH A.DJEGHADER,J.RENDON,F.BIASO,G.GERBAUD,W.NITSCHKE, JRNL AUTH 2 B.SCHOEPP-COTHENET,T.SOULIMANE,S.GRIMALDI JRNL TITL STRUCTURAL AND SPECTROSCOPIC INVESTIGATIONS OF PH-DEPENDENT JRNL TITL 2 MO(V) SPECIES IN A BACTERIAL SULFITE-OXIDIZING ENZYME. JRNL REF INORG.CHEM. V. 63 22699 2024 JRNL REFN ISSN 0020-1669 JRNL PMID 39561325 JRNL DOI 10.1021/ACS.INORGCHEM.4C02584 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.DJEGHADER,M.ROSSOTTI,S.ABDULKARIM,F.BIASO,G.GERBAUD, REMARK 1 AUTH 2 W.NITSCHKE,B.SCHOEPP-COTHENET,T.SOULIMANE,S.GRIMALDI REMARK 1 TITL STRUCTURAL EVIDENCE FOR A REACTION INTERMEDIATE MIMIC IN THE REMARK 1 TITL 2 ACTIVE SITE OF A SULFITE DEHYDROGENASE. REMARK 1 REF CHEM COMMUN (CAMB) V. 56 9850 2020 REMARK 1 REFN ESSN 1364-548X REMARK 1 PMID 32716419 REMARK 1 DOI 10.1039/D0CC03634J REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 49202 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.065 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3405 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2974 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 319 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29500 REMARK 3 B22 (A**2) : -0.29500 REMARK 3 B33 (A**2) : 0.95600 REMARK 3 B12 (A**2) : -0.14700 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.098 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.594 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3115 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2956 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4259 ; 1.926 ; 1.847 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6797 ; 0.617 ; 1.748 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 389 ; 6.647 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 24 ; 9.001 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 494 ;12.848 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 460 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3749 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 744 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 530 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 100 ; 0.136 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1516 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 258 ; 0.162 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1523 ; 3.022 ; 3.261 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1523 ; 3.021 ; 3.261 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1905 ; 3.840 ; 5.843 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1906 ; 3.850 ; 5.845 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1592 ; 4.921 ; 3.818 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1593 ; 4.919 ; 3.818 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2348 ; 7.346 ; 6.743 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2349 ; 7.345 ; 6.743 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8S5S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1292136867. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96851 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49202 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 42.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 8000, 0.1 M SODIUM CITRATE REMARK 280 TRIBASIC DIHYDRATE PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.26333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.52667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.39500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 95.65833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.13167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.26333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 76.52667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 95.65833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 57.39500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 19.13167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -19.13167 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 632 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 684 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 689 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 697 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 761 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 765 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 767 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 789 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 GLN A 3 REMARK 465 HIS A 382 REMARK 465 HIS A 383 REMARK 465 HIS A 384 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MOM1 MSS A 401 O HOH A 714 2.06 REMARK 500 OE1 GLU A 95 O HOH A 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 107 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 121 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 230 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 230 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 365 NE - CZ - NH1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 365 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 59 57.45 -100.72 REMARK 500 LYS A 120 -107.14 -86.63 REMARK 500 MET A 228 114.69 -164.07 REMARK 500 TRP A 263 -86.84 -114.68 REMARK 500 ASN A 293 -153.64 -134.66 REMARK 500 ASN A 370 27.52 -150.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 133 0.11 SIDE CHAIN REMARK 500 ARG A 316 0.14 SIDE CHAIN REMARK 500 ARG A 319 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MSS A 401 MOM1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 102 SG REMARK 620 2 MSS A 401 S1' 141.6 REMARK 620 3 MSS A 401 S2' 87.4 82.7 REMARK 620 4 MSS A 401 OM1 111.5 106.6 97.7 REMARK 620 N 1 2 3 DBREF 8S5S A 2 380 UNP Q5SIP4 Q5SIP4_THET8 29 407 SEQADV 8S5S MET A 1 UNP Q5SIP4 INITIATING METHIONINE SEQADV 8S5S HIS A 381 UNP Q5SIP4 EXPRESSION TAG SEQADV 8S5S HIS A 382 UNP Q5SIP4 EXPRESSION TAG SEQADV 8S5S HIS A 383 UNP Q5SIP4 EXPRESSION TAG SEQADV 8S5S HIS A 384 UNP Q5SIP4 EXPRESSION TAG SEQADV 8S5S HIS A 385 UNP Q5SIP4 EXPRESSION TAG SEQADV 8S5S HIS A 386 UNP Q5SIP4 EXPRESSION TAG SEQRES 1 A 386 MET GLN GLN ALA PRO THR ALA ASP GLN LEU VAL LYS GLY SEQRES 2 A 386 LYS ASN PRO LYS LEU LEU VAL LEU SER GLN ARG PRO ILE SEQRES 3 A 386 VAL LEU GLU THR PRO TYR ASP LEU LEU VAL SER GLN PRO SEQRES 4 A 386 GLU ARG THR PRO LYS GLU ILE LEU TYR ILE ARG ASN ASN SEQRES 5 A 386 VAL ASP LEU PRO GLY TYR ASN THR VAL GLU GLY ALA SER SEQRES 6 A 386 LEU ASP GLY TRP LYS VAL GLU VAL GLY GLY LEU VAL ASP SEQRES 7 A 386 LYS PRO PHE THR PHE GLU ALA LYS GLU LEU LEU GLU LEU SEQRES 8 A 386 PRO GLN HIS GLU VAL THR MET VAL LEU GLN CYS SER GLY SEQRES 9 A 386 ASN GLY ARG SER LEU PHE GLN PRO ARG THR SER GLY ASN SEQRES 10 A 386 PRO TRP LYS ARG GLY GLY VAL GLY ASN VAL THR PHE ARG SEQRES 11 A 386 GLY VAL ARG LEU LYS ASP LEU LEU GLU ALA LYS GLY VAL SEQRES 12 A 386 LYS LEU GLY GLU LYS ALA LEU TYR ILE THR ALA HIS ALA SEQRES 13 A 386 SER ARG GLN GLY ASN ALA PRO GLU PHE VAL ARG SER VAL SEQRES 14 A 386 PRO ILE HIS ALA LEU GLY HIS ALA LEU LEU ALA LEU SER SEQRES 15 A 386 MET ASN GLY GLU PRO LEU PRO ALA VAL HIS GLY GLY PRO SEQRES 16 A 386 ILE ARG LEU VAL PHE PRO GLY TYR PHE GLY VAL ASN ASN SEQRES 17 A 386 VAL LYS TRP VAL GLN LYS ILE GLU PHE THR GLU ALA GLU SEQRES 18 A 386 ASN THR THR ALA GLU GLN MET PRO ARG TYR ARG VAL PRO SEQRES 19 A 386 ALA ILE PRO ASN ALA ASN ILE PRO PHE LEU PRO GLN GLU SEQRES 20 A 386 PRO GLY LYS THR TYR PRO TYR SER PHE THR ASN SER ARG SEQRES 21 A 386 PRO ASN TRP LEU VAL ALA ILE ASN SER PHE ILE PHE ALA SEQRES 22 A 386 PRO LEU GLU GLY GLN THR VAL GLU GLY PRO TYR VAL ARG SEQRES 23 A 386 VAL GLU GLY VAL ALA PHE ASN ASP GLY ILE VAL PRO LEU SEQRES 24 A 386 VAL SER VAL GLU VAL SER ALA ASN GLY GLY ARG THR TRP SEQRES 25 A 386 GLN GLN ALA ARG LEU GLU ARG GLN GLU LYS SER PHE GLY SEQRES 26 A 386 TRP VAL ARG TRP GLN ALA THR LEU TYR LEU ARG PRO GLY SEQRES 27 A 386 GLU HIS GLU VAL MET ALA ARG ALA TRP ASP ALA VAL GLY SEQRES 28 A 386 ARG SER GLN PRO LEU ASP GLY ASN ILE ALA TRP ASN GLU SEQRES 29 A 386 ARG GLY TYR GLU TYR ASN GLY VAL MET ARG VAL LYS PHE SEQRES 30 A 386 THR VAL ALA HIS HIS HIS HIS HIS HIS HET MSS A 401 26 HET CL A 402 1 HETNAM MSS (MOLYBDOPTERIN-S,S)-OXO-MOLYBDENUM HETNAM CL CHLORIDE ION FORMUL 2 MSS C10 H12 MO N5 O7 P S2 FORMUL 3 CL CL 1- FORMUL 4 HOH *319(H2 O) HELIX 1 AA1 THR A 6 VAL A 11 1 6 HELIX 2 AA2 PRO A 31 SER A 37 1 7 HELIX 3 AA3 LYS A 86 LEU A 91 5 6 HELIX 4 AA4 GLY A 106 PHE A 110 5 5 HELIX 5 AA5 LEU A 134 LYS A 141 1 8 HELIX 6 AA6 ARG A 158 ALA A 162 5 5 HELIX 7 AA7 HIS A 172 HIS A 176 5 5 HELIX 8 AA8 PRO A 189 GLY A 193 5 5 HELIX 9 AA9 PHE A 204 ASN A 208 5 5 HELIX 10 AB1 ASP A 357 TRP A 362 5 6 SHEET 1 AA1 3 LEU A 19 SER A 22 0 SHEET 2 AA1 3 VAL A 27 GLU A 29 -1 O VAL A 27 N LEU A 21 SHEET 3 AA1 3 ILE A 49 ARG A 50 -1 O ILE A 49 N LEU A 28 SHEET 1 AA2 5 PHE A 81 GLU A 84 0 SHEET 2 AA2 5 LYS A 70 GLY A 75 -1 N VAL A 73 O PHE A 81 SHEET 3 AA2 5 VAL A 212 THR A 218 1 O ILE A 215 N GLU A 72 SHEET 4 AA2 5 TYR A 151 ALA A 156 -1 N HIS A 155 O GLN A 213 SHEET 5 AA2 5 VAL A 166 PRO A 170 -1 O ARG A 167 N ALA A 154 SHEET 1 AA3 4 HIS A 94 GLN A 101 0 SHEET 2 AA3 4 VAL A 124 ARG A 133 -1 O GLY A 131 N HIS A 94 SHEET 3 AA3 4 LEU A 178 MET A 183 -1 O LEU A 179 N VAL A 132 SHEET 4 AA3 4 GLU A 186 PRO A 187 -1 O GLU A 186 N MET A 183 SHEET 1 AA4 5 HIS A 94 GLN A 101 0 SHEET 2 AA4 5 VAL A 124 ARG A 133 -1 O GLY A 131 N HIS A 94 SHEET 3 AA4 5 LEU A 178 MET A 183 -1 O LEU A 179 N VAL A 132 SHEET 4 AA4 5 ARG A 197 VAL A 199 -1 O VAL A 199 N LEU A 178 SHEET 5 AA4 5 VAL A 209 LYS A 210 -1 O VAL A 209 N LEU A 198 SHEET 1 AA5 2 ARG A 232 PRO A 234 0 SHEET 2 AA5 2 SER A 259 PRO A 261 -1 O ARG A 260 N VAL A 233 SHEET 1 AA6 4 ASN A 268 ALA A 273 0 SHEET 2 AA6 4 TYR A 284 PHE A 292 -1 O GLU A 288 N PHE A 272 SHEET 3 AA6 4 VAL A 327 TYR A 334 -1 O LEU A 333 N VAL A 285 SHEET 4 AA6 4 ARG A 316 LEU A 317 -1 N ARG A 316 O GLN A 330 SHEET 1 AA7 5 THR A 279 VAL A 280 0 SHEET 2 AA7 5 MET A 373 VAL A 379 1 O THR A 378 N VAL A 280 SHEET 3 AA7 5 GLY A 338 ASP A 348 -1 N GLY A 338 O VAL A 379 SHEET 4 AA7 5 LEU A 299 SER A 305 -1 N VAL A 300 O TRP A 347 SHEET 5 AA7 5 GLN A 313 GLN A 314 -1 O GLN A 313 N VAL A 304 LINK SG CYS A 102 MOM1 MSS A 401 1555 1555 2.47 CISPEP 1 ARG A 24 PRO A 25 0 -8.84 CISPEP 2 GLN A 111 PRO A 112 0 -3.57 CISPEP 3 GLY A 194 PRO A 195 0 12.39 CISPEP 4 MET A 228 PRO A 229 0 14.27 CISPEP 5 ALA A 273 PRO A 274 0 -10.02 CRYST1 130.020 130.020 114.790 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007691 0.004440 0.000000 0.00000 SCALE2 0.000000 0.008881 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008712 0.00000