HEADER RNA 28-FEB-24 8S6N TITLE STRUCTURE OF MLLE3 DOMAIN OF RRM4 IN COMPLEX WITH PAM2L1 OF UPA1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN RRM4; COMPND 3 CHAIN: A, B, D, G; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PAMPL1; COMPND 7 CHAIN: E, C, F, H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: USTILAGO MAYDIS; SOURCE 3 ORGANISM_TAXID: 5270; SOURCE 4 GENE: RRM4, UMAG_10836; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: USTILAGO MAYDIS; SOURCE 10 ORGANISM_TAXID: 5270 KEYWDS RNA TRANSPORT USTILAGO MAYDIS, RNA EXPDTA X-RAY DIFFRACTION AUTHOR S.DEVAN,S.SHANMUGASUNDARAM,K.MUENTJES,S.H.SMITS,F.ALTEGOER, AUTHOR 2 M.FELDBRUEGGE REVDAT 3 20-NOV-24 8S6N 1 TITLE REVDAT 2 13-NOV-24 8S6N 1 JRNL REVDAT 1 30-OCT-24 8S6N 0 JRNL AUTH S.K.DEVAN,S.SHANMUGASUNDARAM,K.MUNTJES,J.POSTMA,S.H.J.SMITS, JRNL AUTH 2 F.ALTEGOER,M.FELDBRUGGE JRNL TITL DECIPHERING THE RNA-BINDING PROTEIN NETWORK DURING ENDOSOMAL JRNL TITL 2 MRNA TRANSPORT. JRNL REF PROC.NATL.ACAD.SCI.USA V. 121 91121 2024 JRNL REFN ESSN 1091-6490 JRNL PMID 39499630 JRNL DOI 10.1073/PNAS.2404091121 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.17 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 54087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3876 REMARK 3 ANGLE : 1.295 5236 REMARK 3 CHIRALITY : 0.056 616 REMARK 3 PLANARITY : 0.008 672 REMARK 3 DIHEDRAL : 20.425 1436 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8S6N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1292136923. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9253 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54171 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.743 REMARK 200 RESOLUTION RANGE LOW (A) : 46.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.2 M AMSO4 + 0.1M MES PH 6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.19900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.19900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.35750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.74300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.35750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.74300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 85.19900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.35750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.74300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 85.19900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.35750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.74300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 118 REMARK 465 GLY A 119 REMARK 465 VAL A 120 REMARK 465 LYS A 121 REMARK 465 GLY A 122 REMARK 465 ALA A 123 REMARK 465 PRO A 124 REMARK 465 LYS A 125 REMARK 465 LEU A 126 REMARK 465 THR A 127 REMARK 465 ILE A 128 REMARK 465 HIS A 129 REMARK 465 LEU A 130 REMARK 465 LEU A 131 REMARK 465 ASP A 132 REMARK 465 SER A 133 REMARK 465 GLU A 134 REMARK 465 ASP A 135 REMARK 465 PHE B 118 REMARK 465 GLY B 119 REMARK 465 VAL B 120 REMARK 465 LYS B 121 REMARK 465 GLY B 122 REMARK 465 ALA B 123 REMARK 465 PRO B 124 REMARK 465 LYS B 125 REMARK 465 LEU B 126 REMARK 465 THR B 127 REMARK 465 ILE B 128 REMARK 465 HIS B 129 REMARK 465 LEU B 130 REMARK 465 LEU B 131 REMARK 465 ASP B 132 REMARK 465 SER B 133 REMARK 465 GLU B 134 REMARK 465 ASP B 135 REMARK 465 PHE D 118 REMARK 465 GLY D 119 REMARK 465 VAL D 120 REMARK 465 LYS D 121 REMARK 465 GLY D 122 REMARK 465 ALA D 123 REMARK 465 PRO D 124 REMARK 465 LYS D 125 REMARK 465 LEU D 126 REMARK 465 THR D 127 REMARK 465 ILE D 128 REMARK 465 HIS D 129 REMARK 465 LEU D 130 REMARK 465 LEU D 131 REMARK 465 ASP D 132 REMARK 465 SER D 133 REMARK 465 GLU D 134 REMARK 465 ASP D 135 REMARK 465 PHE G 118 REMARK 465 GLY G 119 REMARK 465 VAL G 120 REMARK 465 LYS G 121 REMARK 465 GLY G 122 REMARK 465 ALA G 123 REMARK 465 PRO G 124 REMARK 465 LYS G 125 REMARK 465 LEU G 126 REMARK 465 THR G 127 REMARK 465 ILE G 128 REMARK 465 HIS G 129 REMARK 465 LEU G 130 REMARK 465 LEU G 131 REMARK 465 ASP G 132 REMARK 465 SER G 133 REMARK 465 GLU G 134 REMARK 465 ASP G 135 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS E 52 CG CD CE NZ REMARK 470 LEU E 53 CG CD1 CD2 REMARK 470 LYS E 54 CG CD CE NZ REMARK 470 TYR E 60 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS C 52 CG CD CE NZ REMARK 470 LEU C 53 CG CD1 CD2 REMARK 470 LYS C 54 CG CD CE NZ REMARK 470 TYR C 60 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS F 52 CG CD CE NZ REMARK 470 LEU F 53 CG CD1 CD2 REMARK 470 LYS F 54 CG CD CE NZ REMARK 470 TYR F 60 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS H 52 CG CD CE NZ REMARK 470 LEU H 53 CG CD1 CD2 REMARK 470 LYS H 54 CG CD CE NZ REMARK 470 TYR H 60 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH H 101 O HOH H 102 1.80 REMARK 500 O HOH A 258 O HOH D 263 1.87 REMARK 500 O HOH B 245 O HOH C 106 1.94 REMARK 500 NZ LYS G 117 O HOH G 201 1.96 REMARK 500 O HOH A 201 O HOH A 272 1.97 REMARK 500 O HOH G 234 O HOH G 250 2.03 REMARK 500 OD2 ASP B 62 O HOH B 201 2.07 REMARK 500 O HOH D 239 O HOH D 265 2.07 REMARK 500 O HOH D 252 O HOH D 266 2.09 REMARK 500 O HOH B 209 O HOH B 249 2.09 REMARK 500 O HOH A 223 O HOH A 277 2.11 REMARK 500 O SER G 22 OG SER G 25 2.12 REMARK 500 O HOH A 211 O HOH A 271 2.12 REMARK 500 O HOH G 240 O HOH G 252 2.12 REMARK 500 OE2 GLU B 105 O HOH B 202 2.15 REMARK 500 O HOH A 242 O HOH A 261 2.15 REMARK 500 O LEU D 28 O HOH D 201 2.16 REMARK 500 O HOH C 101 O HOH C 105 2.17 REMARK 500 NH1 ARG B 69 O HOH B 203 2.19 REMARK 500 OE2 GLU A 105 O HOH A 201 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 247 O HOH A 247 4555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP E 59 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 LYS B 32 CA - CB - CG ANGL. DEV. = -14.6 DEGREES REMARK 500 ASP F 59 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 24 39.89 -89.38 REMARK 500 LYS E 54 -72.90 -99.99 REMARK 500 SER B 25 56.14 -94.20 REMARK 500 SER D 24 32.57 -77.20 REMARK 500 SER D 25 49.97 -98.00 REMARK 500 LEU F 53 85.30 -68.47 REMARK 500 LYS F 54 -70.99 -105.17 REMARK 500 SER G 24 35.28 -90.73 REMARK 500 SER G 25 58.53 -90.37 REMARK 500 LYS H 54 -70.37 -66.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS F 54 PRO F 55 147.77 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8S6N A 1 117 UNP RRM4_USTMA DBREF2 8S6N A A0A0D1DWZ5 676 792 DBREF 8S6N E 52 60 PDB 8S6N 8S6N 52 60 DBREF1 8S6N B 1 117 UNP RRM4_USTMA DBREF2 8S6N B A0A0D1DWZ5 676 792 DBREF 8S6N C 52 60 PDB 8S6N 8S6N 52 60 DBREF1 8S6N D 1 117 UNP RRM4_USTMA DBREF2 8S6N D A0A0D1DWZ5 676 792 DBREF 8S6N F 52 60 PDB 8S6N 8S6N 52 60 DBREF1 8S6N G 1 117 UNP RRM4_USTMA DBREF2 8S6N G A0A0D1DWZ5 676 792 DBREF 8S6N H 52 60 PDB 8S6N 8S6N 52 60 SEQADV 8S6N PHE A 118 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N GLY A 119 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N VAL A 120 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N LYS A 121 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N GLY A 122 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N ALA A 123 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N PRO A 124 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N LYS A 125 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N LEU A 126 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N THR A 127 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N ILE A 128 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N HIS A 129 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N LEU A 130 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N LEU A 131 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N ASP A 132 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N SER A 133 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N GLU A 134 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N ASP A 135 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N PHE B 118 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N GLY B 119 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N VAL B 120 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N LYS B 121 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N GLY B 122 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N ALA B 123 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N PRO B 124 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N LYS B 125 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N LEU B 126 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N THR B 127 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N ILE B 128 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N HIS B 129 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N LEU B 130 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N LEU B 131 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N ASP B 132 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N SER B 133 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N GLU B 134 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N ASP B 135 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N PHE D 118 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N GLY D 119 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N VAL D 120 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N LYS D 121 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N GLY D 122 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N ALA D 123 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N PRO D 124 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N LYS D 125 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N LEU D 126 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N THR D 127 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N ILE D 128 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N HIS D 129 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N LEU D 130 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N LEU D 131 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N ASP D 132 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N SER D 133 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N GLU D 134 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N ASP D 135 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N PHE G 118 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N GLY G 119 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N VAL G 120 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N LYS G 121 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N GLY G 122 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N ALA G 123 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N PRO G 124 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N LYS G 125 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N LEU G 126 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N THR G 127 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N ILE G 128 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N HIS G 129 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N LEU G 130 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N LEU G 131 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N ASP G 132 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N SER G 133 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N GLU G 134 UNP A0A0D1DWZ EXPRESSION TAG SEQADV 8S6N ASP G 135 UNP A0A0D1DWZ EXPRESSION TAG SEQRES 1 A 135 GLU ALA TYR THR LEU SER THR LEU ALA ALA LEU PRO ALA SEQRES 2 A 135 ALA GLU ILE VAL ARG LEU ALA ASN SER GLN SER SER SER SEQRES 3 A 135 GLY LEU PRO LEU PRO LYS ALA ASP PRO ALA THR VAL LYS SEQRES 4 A 135 ALA THR ASP ASP PHE ILE ASP SER LEU GLN GLY LYS ALA SEQRES 5 A 135 ALA HIS ASP GLN LYS GLN LYS LEU GLY ASP GLN LEU PHE SEQRES 6 A 135 LYS LYS ILE ARG THR PHE GLY VAL LYS GLY ALA PRO LYS SEQRES 7 A 135 LEU THR ILE HIS LEU LEU ASP SER GLU ASP LEU ARG ALA SEQRES 8 A 135 LEU ALA HIS LEU MET ASN SER TYR GLU ASP VAL LEU LYS SEQRES 9 A 135 GLU LYS VAL GLN HIS LYS VAL ALA ALA GLY LEU ASN LYS SEQRES 10 A 135 PHE GLY VAL LYS GLY ALA PRO LYS LEU THR ILE HIS LEU SEQRES 11 A 135 LEU ASP SER GLU ASP SEQRES 1 E 9 LYS LEU LYS PRO TYR VAL PHE ASP TYR SEQRES 1 B 135 GLU ALA TYR THR LEU SER THR LEU ALA ALA LEU PRO ALA SEQRES 2 B 135 ALA GLU ILE VAL ARG LEU ALA ASN SER GLN SER SER SER SEQRES 3 B 135 GLY LEU PRO LEU PRO LYS ALA ASP PRO ALA THR VAL LYS SEQRES 4 B 135 ALA THR ASP ASP PHE ILE ASP SER LEU GLN GLY LYS ALA SEQRES 5 B 135 ALA HIS ASP GLN LYS GLN LYS LEU GLY ASP GLN LEU PHE SEQRES 6 B 135 LYS LYS ILE ARG THR PHE GLY VAL LYS GLY ALA PRO LYS SEQRES 7 B 135 LEU THR ILE HIS LEU LEU ASP SER GLU ASP LEU ARG ALA SEQRES 8 B 135 LEU ALA HIS LEU MET ASN SER TYR GLU ASP VAL LEU LYS SEQRES 9 B 135 GLU LYS VAL GLN HIS LYS VAL ALA ALA GLY LEU ASN LYS SEQRES 10 B 135 PHE GLY VAL LYS GLY ALA PRO LYS LEU THR ILE HIS LEU SEQRES 11 B 135 LEU ASP SER GLU ASP SEQRES 1 C 9 LYS LEU LYS PRO TYR VAL PHE ASP TYR SEQRES 1 D 135 GLU ALA TYR THR LEU SER THR LEU ALA ALA LEU PRO ALA SEQRES 2 D 135 ALA GLU ILE VAL ARG LEU ALA ASN SER GLN SER SER SER SEQRES 3 D 135 GLY LEU PRO LEU PRO LYS ALA ASP PRO ALA THR VAL LYS SEQRES 4 D 135 ALA THR ASP ASP PHE ILE ASP SER LEU GLN GLY LYS ALA SEQRES 5 D 135 ALA HIS ASP GLN LYS GLN LYS LEU GLY ASP GLN LEU PHE SEQRES 6 D 135 LYS LYS ILE ARG THR PHE GLY VAL LYS GLY ALA PRO LYS SEQRES 7 D 135 LEU THR ILE HIS LEU LEU ASP SER GLU ASP LEU ARG ALA SEQRES 8 D 135 LEU ALA HIS LEU MET ASN SER TYR GLU ASP VAL LEU LYS SEQRES 9 D 135 GLU LYS VAL GLN HIS LYS VAL ALA ALA GLY LEU ASN LYS SEQRES 10 D 135 PHE GLY VAL LYS GLY ALA PRO LYS LEU THR ILE HIS LEU SEQRES 11 D 135 LEU ASP SER GLU ASP SEQRES 1 F 9 LYS LEU LYS PRO TYR VAL PHE ASP TYR SEQRES 1 G 135 GLU ALA TYR THR LEU SER THR LEU ALA ALA LEU PRO ALA SEQRES 2 G 135 ALA GLU ILE VAL ARG LEU ALA ASN SER GLN SER SER SER SEQRES 3 G 135 GLY LEU PRO LEU PRO LYS ALA ASP PRO ALA THR VAL LYS SEQRES 4 G 135 ALA THR ASP ASP PHE ILE ASP SER LEU GLN GLY LYS ALA SEQRES 5 G 135 ALA HIS ASP GLN LYS GLN LYS LEU GLY ASP GLN LEU PHE SEQRES 6 G 135 LYS LYS ILE ARG THR PHE GLY VAL LYS GLY ALA PRO LYS SEQRES 7 G 135 LEU THR ILE HIS LEU LEU ASP SER GLU ASP LEU ARG ALA SEQRES 8 G 135 LEU ALA HIS LEU MET ASN SER TYR GLU ASP VAL LEU LYS SEQRES 9 G 135 GLU LYS VAL GLN HIS LYS VAL ALA ALA GLY LEU ASN LYS SEQRES 10 G 135 PHE GLY VAL LYS GLY ALA PRO LYS LEU THR ILE HIS LEU SEQRES 11 G 135 LEU ASP SER GLU ASP SEQRES 1 H 9 LYS LEU LYS PRO TYR VAL PHE ASP TYR FORMUL 9 HOH *271(H2 O) HELIX 1 AA1 THR A 4 ALA A 10 1 7 HELIX 2 AA2 PRO A 12 SER A 22 1 11 HELIX 3 AA3 ASP A 34 GLN A 49 1 16 HELIX 4 AA4 ALA A 52 PHE A 71 1 20 HELIX 5 AA5 GLY A 75 GLU A 87 1 13 HELIX 6 AA6 ASP A 88 TYR A 99 1 12 HELIX 7 AA7 TYR A 99 ALA A 113 1 15 HELIX 8 AA8 THR B 4 ALA B 10 1 7 HELIX 9 AA9 PRO B 12 SER B 22 1 11 HELIX 10 AB1 ASP B 34 GLN B 49 1 16 HELIX 11 AB2 ALA B 52 PHE B 71 1 20 HELIX 12 AB3 GLY B 75 GLU B 87 1 13 HELIX 13 AB4 ASP B 88 TYR B 99 1 12 HELIX 14 AB5 TYR B 99 ALA B 113 1 15 HELIX 15 AB6 THR D 4 ALA D 10 1 7 HELIX 16 AB7 PRO D 12 SER D 22 1 11 HELIX 17 AB8 ASP D 34 GLN D 49 1 16 HELIX 18 AB9 ALA D 52 ARG D 69 1 18 HELIX 19 AC1 GLY D 75 GLU D 87 1 13 HELIX 20 AC2 ASP D 88 TYR D 99 1 12 HELIX 21 AC3 TYR D 99 ALA D 113 1 15 HELIX 22 AC4 THR G 4 ALA G 10 1 7 HELIX 23 AC5 PRO G 12 SER G 22 1 11 HELIX 24 AC6 ASP G 34 GLN G 49 1 16 HELIX 25 AC7 ALA G 52 PHE G 71 1 20 HELIX 26 AC8 GLY G 75 GLU G 87 1 13 HELIX 27 AC9 ASP G 88 TYR G 99 1 12 HELIX 28 AD1 TYR G 99 ALA G 113 1 15 CRYST1 74.715 83.486 170.398 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013384 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011978 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005869 0.00000