HEADER TRANSFERASE 06-MAR-24 8S87 TITLE KOD-H4 DNA POLYMERASE MUTANT - APO STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS KOD1; SOURCE 3 ORGANISM_TAXID: 69014; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS APO, MUTANT DNA POLYMERASE, XNA, HNA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.GUTFREUND,K.BETZ REVDAT 1 13-NOV-24 8S87 0 JRNL AUTH C.GUTFREUND,K.BETZ JRNL TITL STRUCTURAL INSIGHTS INTO A DNA POLYMERASE READING THE XENO JRNL TITL 2 NUCLEIC ACID HNA JRNL REF NUCLEIC ACIDS RES. 2024 JRNL REFN ESSN 1362-4962 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_4788: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.300 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 158305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.350 REMARK 3 FREE R VALUE TEST SET COUNT : 3719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.4000 - 5.4600 0.99 5718 137 0.1641 0.2025 REMARK 3 2 5.4600 - 4.3300 1.00 5739 138 0.1427 0.1622 REMARK 3 3 4.3300 - 3.7900 1.00 5770 146 0.1590 0.1851 REMARK 3 4 3.7800 - 3.4400 1.00 5752 138 0.1902 0.2340 REMARK 3 5 3.4400 - 3.1900 1.00 5762 145 0.2171 0.2991 REMARK 3 6 3.1900 - 3.0000 1.00 5735 131 0.2367 0.2672 REMARK 3 7 3.0000 - 2.8500 1.00 5690 141 0.2317 0.3546 REMARK 3 8 2.8500 - 2.7300 1.00 5789 141 0.2549 0.2931 REMARK 3 9 2.7300 - 2.6200 1.00 5739 139 0.2434 0.3032 REMARK 3 10 2.6200 - 2.5300 1.00 5782 127 0.2521 0.3288 REMARK 3 11 2.5300 - 2.4500 1.00 5744 138 0.2561 0.3503 REMARK 3 12 2.4500 - 2.3800 1.00 5732 144 0.2665 0.3077 REMARK 3 13 2.3800 - 2.3200 1.00 5740 133 0.2773 0.2686 REMARK 3 14 2.3200 - 2.2700 1.00 5749 138 0.2879 0.3374 REMARK 3 15 2.2700 - 2.2100 1.00 5780 141 0.3060 0.3931 REMARK 3 16 2.2100 - 2.1700 1.00 5761 133 0.3515 0.4370 REMARK 3 17 2.1700 - 2.1200 1.00 5710 132 0.3797 0.4460 REMARK 3 18 2.1200 - 2.0800 1.00 5752 143 0.3928 0.3954 REMARK 3 19 2.0800 - 2.0500 1.00 5756 132 0.4145 0.4638 REMARK 3 20 2.0500 - 2.0100 1.00 5696 143 0.4291 0.4791 REMARK 3 21 2.0100 - 1.9800 1.00 5761 141 0.4563 0.4698 REMARK 3 22 1.9800 - 1.9500 1.00 5763 127 0.4772 0.4874 REMARK 3 23 1.9500 - 1.9200 1.00 5780 143 0.5116 0.5368 REMARK 3 24 1.9200 - 1.8900 1.00 5720 141 0.5256 0.4889 REMARK 3 25 1.8900 - 1.8700 0.99 5687 140 0.5730 0.5242 REMARK 3 26 1.8700 - 1.8400 0.94 5446 134 0.6100 0.6082 REMARK 3 27 1.8400 - 1.8200 0.96 5533 133 0.6006 0.5925 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.520 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 43.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 6380 REMARK 3 ANGLE : 1.128 8608 REMARK 3 CHIRALITY : 0.069 921 REMARK 3 PLANARITY : 0.012 1100 REMARK 3 DIHEDRAL : 5.656 860 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -14.6368 25.0941 -5.4945 REMARK 3 T TENSOR REMARK 3 T11: 0.5725 T22: 0.4098 REMARK 3 T33: 0.3278 T12: -0.0024 REMARK 3 T13: -0.0422 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.1592 L22: 0.7406 REMARK 3 L33: 0.5697 L12: -0.0678 REMARK 3 L13: -0.0910 L23: 0.2346 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: -0.0011 S13: 0.0380 REMARK 3 S21: 0.0625 S22: -0.0780 S23: 0.0177 REMARK 3 S31: -0.0500 S32: -0.0081 S33: 0.0552 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8S87 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1292137050. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 165421 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 44.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (W/V) PEG 3K, 20% (V/V) 1,2,4 REMARK 280 -BUTANTRIOL, 1% (W/V) NDSB 256, 0.03 M LITHIUM SULFATE, 0.03 M REMARK 280 SODIUM SULFATE, 0.03 M POTASSIUM SULFATE, 0.1 M GLYGLY/AMPD PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.21200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.68150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.31450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.68150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.21200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.31450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 382 REMARK 465 LYS A 383 REMARK 465 TYR A 384 REMARK 465 GLU A 385 REMARK 465 GLY A 386 REMARK 465 GLY A 387 REMARK 465 TYR A 388 REMARK 465 ARG A 761 REMARK 465 GLN A 762 REMARK 465 VAL A 763 REMARK 465 GLY A 764 REMARK 465 LEU A 765 REMARK 465 SER A 766 REMARK 465 ALA A 767 REMARK 465 TRP A 768 REMARK 465 LEU A 769 REMARK 465 LYS A 770 REMARK 465 PRO A 771 REMARK 465 LYS A 772 REMARK 465 GLY A 773 REMARK 465 THR A 774 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 7 HE21 GLN A 91 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 23 NH1 ARG A 394 4555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 59 -118.40 56.39 REMARK 500 ASP A 113 30.15 -141.02 REMARK 500 ASP A 164 -153.05 -134.05 REMARK 500 PHE A 214 -62.90 -123.05 REMARK 500 MET A 244 67.74 -110.52 REMARK 500 ARG A 247 -135.85 -130.50 REMARK 500 LYS A 390 97.70 84.42 REMARK 500 GLN A 436 -51.27 72.36 REMARK 500 ALA A 469 22.78 -77.37 REMARK 500 ASP A 472 102.58 -49.67 REMARK 500 TRP A 504 37.93 -86.25 REMARK 500 CYS A 506 91.92 -166.25 REMARK 500 THR A 541 -57.13 73.12 REMARK 500 ASP A 542 20.13 -140.21 REMARK 500 LYS A 592 -1.98 84.28 REMARK 500 ARG A 612 152.11 -47.83 REMARK 500 GLN A 736 -72.57 -118.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 811 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 211 O REMARK 620 2 HOH A 968 O 116.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 803 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 215 OD2 REMARK 620 2 HOH A1001 O 116.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 259 O REMARK 620 2 SER A 345 OG 143.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 816 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 332 O REMARK 620 2 GLN A 332 OE1 102.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 814 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 337 O REMARK 620 2 TRP A 355 O 98.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 809 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 363 OE2 REMARK 620 2 HOH A 946 O 112.3 REMARK 620 3 HOH A 977 O 102.6 108.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 804 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 404 OD1 REMARK 620 2 GLU A 580 OE2 51.5 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8S84 RELATED DB: PDB REMARK 900 KOD-H4 TERNARY COMPLEX BOUND TO DNA:DNA AND ANON-HYDROLYZABLE REMARK 900 TRIPHOSPHATE DBREF 8S87 A 1 774 UNP D0VWU9 D0VWU9_THEKO 1 774 SEQADV 8S87 GLN A 93 UNP D0VWU9 VAL 93 CONFLICT SEQADV 8S87 THR A 114 UNP D0VWU9 ILE 114 CONFLICT SEQADV 8S87 ALA A 141 UNP D0VWU9 ASP 141 CONFLICT SEQADV 8S87 ALA A 143 UNP D0VWU9 GLU 143 CONFLICT SEQADV 8S87 HIS A 147 UNP D0VWU9 GLU 147 CONFLICT SEQADV 8S87 LYS A 383 UNP D0VWU9 SER 383 CONFLICT SEQADV 8S87 GLY A 429 UNP D0VWU9 LYS 429 CONFLICT SEQADV 8S87 LEU A 445 UNP D0VWU9 PHE 445 CONFLICT SEQADV 8S87 LEU A 485 UNP D0VWU9 ALA 485 CONFLICT SEQADV 8S87 VAL A 493 UNP D0VWU9 TYR 493 CONFLICT SEQADV 8S87 HIS A 496 UNP D0VWU9 TYR 496 CONFLICT SEQADV 8S87 MET A 497 UNP D0VWU9 TYR 497 CONFLICT SEQADV 8S87 PHE A 499 UNP D0VWU9 TYR 499 CONFLICT SEQADV 8S87 GLU A 500 UNP D0VWU9 ALA 500 CONFLICT SEQADV 8S87 ASN A 501 UNP D0VWU9 ARG 501 CONFLICT SEQADV 8S87 LEU A 521 UNP D0VWU9 ILE 521 CONFLICT SEQADV 8S87 LYS A 584 UNP D0VWU9 GLU 584 CONFLICT SEQADV 8S87 LYS A 664 UNP D0VWU9 GLU 664 CONFLICT SEQADV 8S87 ARG A 726 UNP D0VWU9 LYS 726 CONFLICT SEQADV 8S87 LYS A 735 UNP D0VWU9 ASN 735 CONFLICT SEQRES 1 A 774 MET ILE LEU ASP THR ASP TYR ILE THR GLU ASP GLY LYS SEQRES 2 A 774 PRO VAL ILE ARG ILE PHE LYS LYS GLU ASN GLY GLU PHE SEQRES 3 A 774 LYS ILE GLU TYR ASP ARG THR PHE GLU PRO TYR PHE TYR SEQRES 4 A 774 ALA LEU LEU LYS ASP ASP SER ALA ILE GLU GLU VAL LYS SEQRES 5 A 774 LYS ILE THR ALA GLU ARG HIS GLY THR VAL VAL THR VAL SEQRES 6 A 774 LYS ARG VAL GLU LYS VAL GLN LYS LYS PHE LEU GLY ARG SEQRES 7 A 774 PRO VAL GLU VAL TRP LYS LEU TYR PHE THR HIS PRO GLN SEQRES 8 A 774 ASP GLN PRO ALA ILE ARG ASP LYS ILE ARG GLU HIS PRO SEQRES 9 A 774 ALA VAL ILE ASP ILE TYR GLU TYR ASP THR PRO PHE ALA SEQRES 10 A 774 LYS ARG TYR LEU ILE ASP LYS GLY LEU VAL PRO MET GLU SEQRES 11 A 774 GLY ASP GLU GLU LEU LYS MET LEU ALA PHE ALA ILE ALA SEQRES 12 A 774 THR LEU TYR HIS GLU GLY GLU GLU PHE ALA GLU GLY PRO SEQRES 13 A 774 ILE LEU MET ILE SER TYR ALA ASP GLU GLU GLY ALA ARG SEQRES 14 A 774 VAL ILE THR TRP LYS ASN VAL ASP LEU PRO TYR VAL ASP SEQRES 15 A 774 VAL VAL SER THR GLU ARG GLU MET ILE LYS ARG PHE LEU SEQRES 16 A 774 ARG VAL VAL LYS GLU LYS ASP PRO ASP VAL LEU ILE THR SEQRES 17 A 774 TYR ASN GLY ASP ASN PHE ASP PHE ALA TYR LEU LYS LYS SEQRES 18 A 774 ARG CYS GLU LYS LEU GLY ILE ASN PHE ALA LEU GLY ARG SEQRES 19 A 774 ASP GLY SER GLU PRO LYS ILE GLN ARG MET GLY ASP ARG SEQRES 20 A 774 PHE ALA VAL GLU VAL LYS GLY ARG ILE HIS PHE ASP LEU SEQRES 21 A 774 TYR PRO VAL ILE ARG ARG THR ILE ASN LEU PRO THR TYR SEQRES 22 A 774 THR LEU GLU ALA VAL TYR GLU ALA VAL PHE GLY GLN PRO SEQRES 23 A 774 LYS GLU LYS VAL TYR ALA GLU GLU ILE THR THR ALA TRP SEQRES 24 A 774 GLU THR GLY GLU ASN LEU GLU ARG VAL ALA ARG TYR SER SEQRES 25 A 774 MET GLU ASP ALA LYS VAL THR TYR GLU LEU GLY LYS GLU SEQRES 26 A 774 PHE LEU PRO MET GLU ALA GLN LEU SER ARG LEU ILE GLY SEQRES 27 A 774 GLN SER LEU TRP ASP VAL SER ARG SER SER THR GLY ASN SEQRES 28 A 774 LEU VAL GLU TRP PHE LEU LEU ARG LYS ALA TYR GLU ARG SEQRES 29 A 774 ASN GLU LEU ALA PRO ASN LYS PRO ASP GLU LYS GLU LEU SEQRES 30 A 774 ALA ARG ARG ARG GLN LYS TYR GLU GLY GLY TYR VAL LYS SEQRES 31 A 774 GLU PRO GLU ARG GLY LEU TRP GLU ASN ILE VAL TYR LEU SEQRES 32 A 774 ASP PHE ARG SER LEU TYR PRO SER ILE ILE ILE THR HIS SEQRES 33 A 774 ASN VAL SER PRO ASP THR LEU ASN ARG GLU GLY CYS GLY SEQRES 34 A 774 GLU TYR ASP VAL ALA PRO GLN VAL GLY HIS ARG PHE CYS SEQRES 35 A 774 LYS ASP LEU PRO GLY PHE ILE PRO SER LEU LEU GLY ASP SEQRES 36 A 774 LEU LEU GLU GLU ARG GLN LYS ILE LYS LYS LYS MET LYS SEQRES 37 A 774 ALA THR ILE ASP PRO ILE GLU ARG LYS LEU LEU ASP TYR SEQRES 38 A 774 ARG GLN ARG LEU ILE LYS ILE LEU ALA ASN SER VAL TYR SEQRES 39 A 774 GLY HIS MET GLY PHE GLU ASN ALA ARG TRP TYR CYS LYS SEQRES 40 A 774 GLU CYS ALA GLU SER VAL THR ALA TRP GLY ARG GLU TYR SEQRES 41 A 774 LEU THR MET THR ILE LYS GLU ILE GLU GLU LYS TYR GLY SEQRES 42 A 774 PHE LYS VAL ILE TYR SER ASP THR ASP GLY PHE PHE ALA SEQRES 43 A 774 THR ILE PRO GLY ALA ASP ALA GLU THR VAL LYS LYS LYS SEQRES 44 A 774 ALA MET GLU PHE LEU LYS TYR ILE ASN ALA LYS LEU PRO SEQRES 45 A 774 GLY ALA LEU GLU LEU GLU TYR GLU GLY PHE TYR LYS ARG SEQRES 46 A 774 GLY PHE PHE VAL THR LYS LYS LYS TYR ALA VAL ILE ASP SEQRES 47 A 774 GLU GLU GLY LYS ILE THR THR ARG GLY LEU GLU ILE VAL SEQRES 48 A 774 ARG ARG ASP TRP SER GLU ILE ALA LYS GLU THR GLN ALA SEQRES 49 A 774 ARG VAL LEU GLU ALA LEU LEU LYS ASP GLY ASP VAL GLU SEQRES 50 A 774 LYS ALA VAL ARG ILE VAL LYS GLU VAL THR GLU LYS LEU SEQRES 51 A 774 SER LYS TYR GLU VAL PRO PRO GLU LYS LEU VAL ILE HIS SEQRES 52 A 774 LYS GLN ILE THR ARG ASP LEU LYS ASP TYR LYS ALA THR SEQRES 53 A 774 GLY PRO HIS VAL ALA VAL ALA LYS ARG LEU ALA ALA ARG SEQRES 54 A 774 GLY VAL LYS ILE ARG PRO GLY THR VAL ILE SER TYR ILE SEQRES 55 A 774 VAL LEU LYS GLY SER GLY ARG ILE GLY ASP ARG ALA ILE SEQRES 56 A 774 PRO PHE ASP GLU PHE ASP PRO THR LYS HIS ARG TYR ASP SEQRES 57 A 774 ALA GLU TYR TYR ILE GLU LYS GLN VAL LEU PRO ALA VAL SEQRES 58 A 774 GLU ARG ILE LEU ARG ALA PHE GLY TYR ARG LYS GLU ASP SEQRES 59 A 774 LEU ARG TYR GLN LYS THR ARG GLN VAL GLY LEU SER ALA SEQRES 60 A 774 TRP LEU LYS PRO LYS GLY THR HET MG A 801 1 HET MG A 802 1 HET MG A 803 1 HET MG A 804 1 HET SO4 A 805 5 HET SO4 A 806 5 HET NA A 807 1 HET GOL A 808 14 HET NA A 809 1 HET SO4 A 810 5 HET MG A 811 1 HET MG A 812 1 HET SO4 A 813 5 HET MG A 814 1 HET MG A 815 1 HET MG A 816 1 HET SO4 A 817 5 HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MG 9(MG 2+) FORMUL 6 SO4 5(O4 S 2-) FORMUL 8 NA 2(NA 1+) FORMUL 9 GOL C3 H8 O3 FORMUL 19 HOH *153(H2 O) HELIX 1 AA1 ASP A 44 SER A 46 5 3 HELIX 2 AA2 ALA A 47 LYS A 52 1 6 HELIX 3 AA3 GLN A 91 HIS A 103 1 13 HELIX 4 AA4 PRO A 115 LYS A 124 1 10 HELIX 5 AA5 THR A 186 ASP A 202 1 17 HELIX 6 AA6 PHE A 214 GLY A 227 1 14 HELIX 7 AA7 LEU A 260 ILE A 268 1 9 HELIX 8 AA8 THR A 274 GLY A 284 1 11 HELIX 9 AA9 TYR A 291 GLY A 302 1 12 HELIX 10 AB1 ASN A 304 GLY A 338 1 35 HELIX 11 AB2 SER A 340 SER A 345 1 6 HELIX 12 AB3 SER A 348 ARG A 364 1 17 HELIX 13 AB4 ASP A 373 ARG A 380 1 8 HELIX 14 AB5 SER A 407 ASN A 417 1 11 HELIX 15 AB6 GLY A 447 ALA A 469 1 23 HELIX 16 AB7 ASP A 472 PHE A 499 1 28 HELIX 17 AB8 CYS A 506 GLY A 533 1 28 HELIX 18 AB9 ASP A 552 LEU A 571 1 20 HELIX 19 AC1 SER A 616 LYS A 632 1 17 HELIX 20 AC2 ASP A 635 LYS A 652 1 18 HELIX 21 AC3 PRO A 656 VAL A 661 5 6 HELIX 22 AC4 GLY A 677 GLY A 690 1 14 HELIX 23 AC5 ARG A 709 ARG A 713 1 5 HELIX 24 AC6 ASP A 718 PHE A 720 5 3 HELIX 25 AC7 ASP A 728 GLN A 736 1 9 HELIX 26 AC8 GLN A 736 ALA A 747 1 12 HELIX 27 AC9 ARG A 751 ARG A 756 5 6 SHEET 1 AA1 3 ILE A 2 GLU A 10 0 SHEET 2 AA1 3 LYS A 13 GLU A 22 -1 O PHE A 19 N LEU A 3 SHEET 3 AA1 3 GLU A 25 ASP A 31 -1 O LYS A 27 N LYS A 20 SHEET 1 AA2 4 ARG A 67 PHE A 75 0 SHEET 2 AA2 4 ARG A 78 TYR A 86 -1 O LYS A 84 N GLU A 69 SHEET 3 AA2 4 TYR A 37 LEU A 42 -1 N PHE A 38 O LEU A 85 SHEET 4 AA2 4 VAL A 106 TYR A 110 -1 O ILE A 107 N LEU A 41 SHEET 1 AA3 2 THR A 55 ARG A 58 0 SHEET 2 AA3 2 THR A 61 THR A 64 -1 O VAL A 63 N ALA A 56 SHEET 1 AA4 6 VAL A 181 VAL A 183 0 SHEET 2 AA4 6 GLY A 167 THR A 172 1 N VAL A 170 O ASP A 182 SHEET 3 AA4 6 ILE A 157 ASP A 164 -1 N TYR A 162 O ARG A 169 SHEET 4 AA4 6 MET A 137 THR A 144 -1 N ALA A 139 O ALA A 163 SHEET 5 AA4 6 VAL A 205 THR A 208 1 O ILE A 207 N LEU A 138 SHEET 6 AA4 6 ILE A 256 ASP A 259 1 O ILE A 256 N LEU A 206 SHEET 1 AA5 2 LYS A 240 MET A 244 0 SHEET 2 AA5 2 ARG A 247 GLU A 251 -1 O ALA A 249 N GLN A 242 SHEET 1 AA6 6 LYS A 535 SER A 539 0 SHEET 2 AA6 6 GLY A 543 THR A 547 -1 O THR A 547 N LYS A 535 SHEET 3 AA6 6 TRP A 397 PHE A 405 -1 N LEU A 403 O PHE A 544 SHEET 4 AA6 6 LEU A 577 THR A 590 -1 O GLY A 586 N TRP A 397 SHEET 5 AA6 6 LYS A 593 ILE A 597 -1 O LYS A 593 N THR A 590 SHEET 6 AA6 6 ILE A 603 ARG A 606 -1 O THR A 604 N VAL A 596 SHEET 1 AA7 2 TYR A 431 VAL A 433 0 SHEET 2 AA7 2 ARG A 440 CYS A 442 -1 O PHE A 441 N ASP A 432 SHEET 1 AA8 3 ILE A 662 GLN A 665 0 SHEET 2 AA8 3 VAL A 698 VAL A 703 -1 O TYR A 701 N ILE A 662 SHEET 3 AA8 3 ALA A 714 PRO A 716 -1 O ILE A 715 N ILE A 702 SSBOND 1 CYS A 428 CYS A 442 1555 1555 2.04 SSBOND 2 CYS A 506 CYS A 509 1555 1555 2.24 LINK OG1 THR A 9 NA NA A 807 1555 2454 2.90 LINK OD1 ASP A 202 MG MG A 812 1555 1555 2.98 LINK O GLY A 211 MG MG A 811 1555 1555 2.70 LINK OD2 ASP A 215 MG MG A 803 1555 1555 2.90 LINK OD2 ASP A 235 MG MG A 801 1555 1555 2.59 LINK O ASP A 259 MG MG A 802 1555 1555 2.76 LINK O GLN A 332 MG MG A 816 1555 1555 2.83 LINK OE1 GLN A 332 MG MG A 816 1555 1555 2.54 LINK O ILE A 337 MG MG A 814 1555 1555 2.80 LINK OG SER A 345 MG MG A 802 1555 1555 2.76 LINK O TRP A 355 MG MG A 814 1555 1555 2.89 LINK OE2 GLU A 363 NA NA A 809 1555 1555 2.51 LINK OD1 ASP A 404 MG MG A 804 1555 1555 2.95 LINK OE2 GLU A 580 MG MG A 804 1555 1555 2.37 LINK OG1 THR A 622 MG MG A 815 1555 1555 2.84 LINK MG MG A 803 O HOH A1001 1555 1555 2.93 LINK NA NA A 809 O HOH A 946 1555 1555 3.08 LINK NA NA A 809 O HOH A 977 1555 1555 2.75 LINK MG MG A 811 O HOH A 968 1555 1555 2.73 CRYST1 74.424 110.629 111.363 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013437 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009039 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008980 0.00000