data_8S8N # _entry.id 8S8N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.410 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8S8N pdb_00008s8n 10.2210/pdb8s8n/pdb WWPDB D_1292137058 ? ? BMRB 34907 ? 10.13018/BMR34907 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-02-26 ? 2 'Structure model' 1 1 2026-01-14 ? 3 'Structure model' 1 2 2026-03-11 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.page_first' 6 2 'Structure model' '_citation.page_last' 7 2 'Structure model' '_citation.pdbx_database_id_DOI' 8 2 'Structure model' '_citation.pdbx_database_id_PubMed' 9 2 'Structure model' '_citation.title' 10 2 'Structure model' '_citation.year' 11 3 'Structure model' '_citation.journal_volume' 12 3 'Structure model' '_citation.year' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 8S8N _pdbx_database_status.recvd_initial_deposition_date 2024-03-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'NMR structure of tanniamide in micellar DPC solution' _pdbx_database_related.db_id 34907 _pdbx_database_related.content_type unspecified # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 jose.martins@ugent.be Jose Martins C. 'principal investigator/group leader' 0000-0001-7350-2253 3 niels.geudens@ugent.be Niels Geudens ? 'principal investigator/group leader' 0000-0003-0459-7142 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kovacs, B.' 1 0000-0003-2715-5793 'Geudens, N.' 2 0000-0003-0459-7142 'Martins, J.C.' 3 0000-0001-7350-2253 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country DE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Adv Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2198-3844 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 13 _citation.language ? _citation.page_first e20365 _citation.page_last e20365 _citation.title 'Higher-Level Structural Classification of Pseudomonas Cyclic Lipopeptides through Their Bioactive Conformation.' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/advs.202520365 _citation.pdbx_database_id_PubMed 41391051 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kovacs, B.' 1 0000-0003-2715-5793 primary 'Prasad, D.' 2 0000-0002-0266-3401 primary 'De Roo, V.' 3 0000-0002-3418-3285 primary 'Vanheede, M.' 4 0000-0002-6189-2618 primary 'Muangkaew, P.' 5 ? primary 'Madder, A.' 6 0000-0003-0179-7608 primary 'Hofte, M.' 7 0000-0002-0850-3249 primary 'De Mot, R.' 8 0000-0002-0030-9441 primary 'Geudens, N.' 9 0000-0003-0459-7142 primary 'Martins, J.C.' 10 0000-0001-7350-2253 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat Tanniamide 1385.603 1 ? ? ? ;1) The polypeptide chain of tanniamide consists of 12 amino acids. 2) The N-terminal amino acid (DLE) is acylated with an (R)-3-hydroxy-dodecenoic acid (DEA) moeity which is indicated as the first residue. (double bond between the 5th and 6th carbon atoms) 3) The side-chains of the 2TL4 and 28J5 residues are of allo-configuration. 4) The depsi bond is established between the GLU13 mainchain carboxyl and the 2TL4 side-chain OH group. ; 2 non-polymer syn '(~{Z},3~{R})-3-oxidanyldodec-5-enoic acid' 214.301 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(D)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DLE)(DAS)(2TL)(28J)L(DGN)L(DSN)L(DGN)IE' _entity_poly.pdbx_seq_one_letter_code_can LDTXLQLSLQIE _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '(~{Z},3~{R})-3-oxidanyldodec-5-enoic acid' _pdbx_entity_nonpoly.comp_id A1H5T # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DLE n 1 2 DAS n 1 3 2TL n 1 4 28J n 1 5 LEU n 1 6 DGN n 1 7 LEU n 1 8 DSN n 1 9 LEU n 1 10 DGN n 1 11 ILE n 1 12 GLU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 12 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Pseudomonas ekonensis' _entity_src_nat.pdbx_ncbi_taxonomy_id 2842353 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain COR58 _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 28J 'D-peptide linking' . D-alloisoleucine ? 'C6 H13 N O2' 131.173 2TL 'D-peptide linking' . D-allothreonine ? 'C4 H9 N O3' 119.119 A1H5T non-polymer . '(~{Z},3~{R})-3-oxidanyldodec-5-enoic acid' ? 'C12 H22 O3' 214.301 DAS 'D-peptide linking' . 'D-ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DGN 'D-peptide linking' . D-GLUTAMINE ? 'C5 H10 N2 O3' 146.144 DLE 'D-peptide linking' . D-LEUCINE ? 'C6 H13 N O2' 131.173 DSN 'D-peptide linking' . D-SERINE ? 'C3 H7 N O3' 105.093 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DLE 1 2 2 DLE DLE A . n A 1 2 DAS 2 3 3 DAS DAS A . n A 1 3 2TL 3 4 4 2TL 2TL A . n A 1 4 28J 4 5 5 28J DIL A . n A 1 5 LEU 5 6 6 LEU LEU A . n A 1 6 DGN 6 7 7 DGN DGN A . n A 1 7 LEU 7 8 8 LEU LEU A . n A 1 8 DSN 8 9 9 DSN DSN A . n A 1 9 LEU 9 10 10 LEU LEU A . n A 1 10 DGN 10 11 11 DGN DGN A . n A 1 11 ILE 11 12 12 ILE ILE A . n A 1 12 GLU 12 13 13 GLU GLU A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id A1H5T _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id A1H5T _pdbx_nonpoly_scheme.auth_mon_id DEA _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8S8N _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8S8N _struct.title 'NMR structure of tanniamide in micellar DPC solution' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8S8N _struct_keywords.text 'Non-ribosomal polypeptide, Cyclic lipodepsipeptide, Antimicrobial peptide, Biosurfactant, SURFACTANT PROTEIN' _struct_keywords.pdbx_keywords 'SURFACTANT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8S8N _struct_ref.pdbx_db_accession 8S8N _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8S8N _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 12 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8S8N _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 13 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 13 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id 2TL _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 3 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LEU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 7 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id 2TL _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 4 _struct_conf.end_auth_comp_id LEU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 8 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DLE 1 C ? ? ? 1_555 A DAS 2 N ? ? A DLE 2 A DAS 3 1_555 ? ? ? ? ? ? ? 1.385 ? ? covale2 covale both ? A DLE 1 N ? ? ? 1_555 B A1H5T . C ? ? A DLE 2 A A1H5T 101 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale3 covale both ? A DAS 2 C ? ? ? 1_555 A 2TL 3 N ? ? A DAS 3 A 2TL 4 1_555 ? ? ? ? ? ? ? 1.374 ? ? covale4 covale both ? A 2TL 3 C ? ? ? 1_555 A 28J 4 N ? ? A 2TL 4 A 28J 5 1_555 ? ? ? ? ? ? ? 1.386 ? ? covale5 covale one ? A 2TL 3 OG1 ? ? ? 1_555 A GLU 12 C ? ? A 2TL 4 A GLU 13 1_555 ? ? ? ? ? ? ? 1.290 ? ? covale6 covale both ? A 28J 4 C ? ? ? 1_555 A LEU 5 N ? ? A 28J 5 A LEU 6 1_555 ? ? ? ? ? ? ? 1.421 ? ? covale7 covale both ? A LEU 5 C ? ? ? 1_555 A DGN 6 N ? ? A LEU 6 A DGN 7 1_555 ? ? ? ? ? ? ? 1.392 ? ? covale8 covale both ? A DGN 6 C ? ? ? 1_555 A LEU 7 N ? ? A DGN 7 A LEU 8 1_555 ? ? ? ? ? ? ? 1.404 ? ? covale9 covale both ? A LEU 7 C ? ? ? 1_555 A DSN 8 N ? ? A LEU 8 A DSN 9 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale10 covale both ? A DSN 8 C ? ? ? 1_555 A LEU 9 N ? ? A DSN 9 A LEU 10 1_555 ? ? ? ? ? ? ? 1.356 ? ? covale11 covale both ? A LEU 9 C ? ? ? 1_555 A DGN 10 N ? ? A LEU 10 A DGN 11 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale12 covale both ? A DGN 10 C ? ? ? 1_555 A ILE 11 N ? ? A DGN 11 A ILE 12 1_555 ? ? ? ? ? ? ? 1.422 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 2TL A 3 ? . . . . 2TL A 4 ? 1_555 . . . . . . . DTH 1 2TL Stereoisomerisation 'Named protein modification' 2 28J A 4 ? . . . . 28J A 5 ? 1_555 . . . . . . . DIL 1 28J Stereoisomerisation 'Named protein modification' 3 A1H5T B . ? DLE A 1 ? A1H5T A 101 ? 1_555 DLE A 2 ? 1_555 C N DLE 1 A1H5T None Lipid/lipid-like 4 2TL A 3 ? GLU A 12 ? 2TL A 4 ? 1_555 GLU A 13 ? 1_555 OG1 C . . . None 'Non-standard linkage' # _pdbx_entry_details.entry_id 8S8N _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 O A 2TL 4 ? ? H A DGN 7 ? ? 1.59 2 3 OG1 A 2TL 4 ? ? O A ILE 12 ? ? 1.99 3 9 O A 2TL 4 ? ? H A DGN 7 ? ? 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 2 LEU A 6 ? ? 66.55 -3.88 2 2 ILE A 12 ? ? -116.61 52.11 3 3 LEU A 6 ? ? 66.79 -4.35 4 4 LEU A 6 ? ? 68.09 -8.78 5 4 ILE A 12 ? ? -116.96 51.47 6 5 LEU A 6 ? ? 66.79 -6.99 7 5 ILE A 12 ? ? -93.45 -73.51 8 6 LEU A 6 ? ? 67.79 -5.13 9 6 ILE A 12 ? ? -95.79 -70.81 10 7 LEU A 6 ? ? 66.95 -6.24 11 7 LEU A 10 ? ? -50.52 -8.61 12 8 LEU A 6 ? ? 67.62 -5.14 13 8 ILE A 12 ? ? -91.53 -70.93 14 9 LEU A 6 ? ? 66.55 -3.30 15 9 ILE A 12 ? ? -117.20 51.91 16 10 LEU A 6 ? ? 68.16 -5.56 17 10 ILE A 12 ? ? -96.88 -70.72 18 11 LEU A 6 ? ? 65.33 -4.99 19 11 ILE A 12 ? ? -116.87 51.66 # _pdbx_nmr_ensemble.entry_id 8S8N _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 11 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8S8N _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.82 mM tanniamide, 102.2 mM [U-2H] DPC, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label 1H _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ;Tanniamide was dissolved in the micellar solution of uniformly deuterated dodecylphosphocholine (DPC-d38). Solvent: 10 mM Na2HPO4/NaH2PO4 buffer at pH 7.4. ; # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 tanniamide 1.82 ? mM 'natural abundance' 1 DPC 102.2 ? mM '[U-2H]' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 310 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.4 _pdbx_nmr_exptl_sample_conditions.ionic_strength '26 (buffer only)' _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D NOESY' 1 isotropic 2 1 1 '2D TOCSY' 1 isotropic 3 1 1 '2D COSY' 1 isotropic 4 1 1 '2D 1H-13 HSQC' 1 isotropic # _pdbx_nmr_refine.entry_id 8S8N _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ;The lowest energy NMR structure issued from CNS was refined using unrestrained AMBER molecular dynamics simulations (against the ff14SB force field). Here, we modelled the interaction of a single peptide molecule with an explicit dodecylphosphocholine (DPC) micelle. The representative peptide conformation of the trajectory (=refined structure) was selected using cluster analysis. Solvent model: TIP3P. Occasional too-close contacts present in the NMR structure ensemble (structures #2-#11) are fully removed during the AMBER moleculary dynamics refinement (structure #1). Side-chain outlier values for the 2TL4 residue are the results of the depsi bond. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 2 'data analysis' AmberTools ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 3 processing TopSpin 3.x 'Bruker Biospin' 4 collection TopSpin 3.x 'Bruker Biospin' 5 'peak picking' 'CcpNmr Analysis' ? 'Vuister et al. (CCPN)' 6 'structure calculation' CNS ? 'Brunger, Adams, Clore, Gros, Nilges and Read' 7 'chemical shift assignment' 'CcpNmr Analysis' ? CCPN # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 28J N N N N 1 28J CA C N R 2 28J CB C N S 3 28J CG2 C N N 4 28J CG1 C N N 5 28J CD1 C N N 6 28J C C N N 7 28J O O N N 8 28J H H N N 9 28J HA H N N 10 28J H22 H N N 11 28J H23 H N N 12 28J H24 H N N 13 28J H25 H N N 14 28J H26 H N N 15 28J H27 H N N 16 28J H28 H N N 17 28J H29 H N N 18 28J H30 H N N 19 28J H2 H N N 20 28J OXT O N N 21 28J HXT H N N 22 2TL N N N N 23 2TL CA C N R 24 2TL CB C N R 25 2TL OG1 O N N 26 2TL CG2 C N N 27 2TL C C N N 28 2TL O O N N 29 2TL OXT O N N 30 2TL H H N N 31 2TL H2 H N N 32 2TL HA H N N 33 2TL HB H N N 34 2TL HG1 H N N 35 2TL HG21 H N N 36 2TL HG22 H N N 37 2TL HG23 H N N 38 2TL HXT H N N 39 A1H5T O O N N 40 A1H5T CA C N N 41 A1H5T C C N N 42 A1H5T CB C N R 43 A1H5T CG2 C N N 44 A1H5T OG1 O N N 45 A1H5T CD C N N 46 A1H5T CE C N N 47 A1H5T CH C N N 48 A1H5T CI C N N 49 A1H5T CK C N N 50 A1H5T CL C N N 51 A1H5T CF C N N 52 A1H5T CT C N N 53 A1H5T O1 O N N 54 A1H5T HA1 H N N 55 A1H5T HA2 H N N 56 A1H5T HB H N N 57 A1H5T HG22 H N N 58 A1H5T HG21 H N N 59 A1H5T HG1 H N N 60 A1H5T HD H N N 61 A1H5T HE H N N 62 A1H5T HH2 H N N 63 A1H5T HH1 H N N 64 A1H5T HI2 H N N 65 A1H5T HI1 H N N 66 A1H5T HK2 H N N 67 A1H5T HK1 H N N 68 A1H5T HL2 H N N 69 A1H5T HL3 H N N 70 A1H5T HL1 H N N 71 A1H5T HF2 H N N 72 A1H5T HF1 H N N 73 A1H5T HT2 H N N 74 A1H5T HT1 H N N 75 A1H5T H1 H N N 76 DAS N N N N 77 DAS CA C N R 78 DAS C C N N 79 DAS O O N N 80 DAS CB C N N 81 DAS CG C N N 82 DAS OD1 O N N 83 DAS OD2 O N N 84 DAS OXT O N N 85 DAS H H N N 86 DAS H2 H N N 87 DAS HA H N N 88 DAS HB2 H N N 89 DAS HB3 H N N 90 DAS HD2 H N N 91 DAS HXT H N N 92 DGN N N N N 93 DGN CA C N R 94 DGN C C N N 95 DGN O O N N 96 DGN OXT O N N 97 DGN CB C N N 98 DGN CG C N N 99 DGN CD C N N 100 DGN OE1 O N N 101 DGN NE2 N N N 102 DGN H H N N 103 DGN H2 H N N 104 DGN HA H N N 105 DGN HXT H N N 106 DGN HB2 H N N 107 DGN HB3 H N N 108 DGN HG2 H N N 109 DGN HG3 H N N 110 DGN HE21 H N N 111 DGN HE22 H N N 112 DLE N N N N 113 DLE CA C N R 114 DLE CB C N N 115 DLE CG C N N 116 DLE CD1 C N N 117 DLE CD2 C N N 118 DLE C C N N 119 DLE O O N N 120 DLE OXT O N N 121 DLE H H N N 122 DLE H2 H N N 123 DLE HA H N N 124 DLE HB2 H N N 125 DLE HB3 H N N 126 DLE HG H N N 127 DLE HD11 H N N 128 DLE HD12 H N N 129 DLE HD13 H N N 130 DLE HD21 H N N 131 DLE HD22 H N N 132 DLE HD23 H N N 133 DLE HXT H N N 134 DSN N N N N 135 DSN CA C N R 136 DSN C C N N 137 DSN O O N N 138 DSN OXT O N N 139 DSN CB C N N 140 DSN OG O N N 141 DSN H H N N 142 DSN H2 H N N 143 DSN HA H N N 144 DSN HXT H N N 145 DSN HB2 H N N 146 DSN HB3 H N N 147 DSN HG H N N 148 GLU N N N N 149 GLU CA C N S 150 GLU C C N N 151 GLU O O N N 152 GLU CB C N N 153 GLU CG C N N 154 GLU CD C N N 155 GLU OE1 O N N 156 GLU OE2 O N N 157 GLU OXT O N N 158 GLU H H N N 159 GLU H2 H N N 160 GLU HA H N N 161 GLU HB2 H N N 162 GLU HB3 H N N 163 GLU HG2 H N N 164 GLU HG3 H N N 165 GLU HE2 H N N 166 GLU HXT H N N 167 ILE N N N N 168 ILE CA C N S 169 ILE C C N N 170 ILE O O N N 171 ILE CB C N S 172 ILE CG1 C N N 173 ILE CG2 C N N 174 ILE CD1 C N N 175 ILE OXT O N N 176 ILE H H N N 177 ILE H2 H N N 178 ILE HA H N N 179 ILE HB H N N 180 ILE HG12 H N N 181 ILE HG13 H N N 182 ILE HG21 H N N 183 ILE HG22 H N N 184 ILE HG23 H N N 185 ILE HD11 H N N 186 ILE HD12 H N N 187 ILE HD13 H N N 188 ILE HXT H N N 189 LEU N N N N 190 LEU CA C N S 191 LEU C C N N 192 LEU O O N N 193 LEU CB C N N 194 LEU CG C N N 195 LEU CD1 C N N 196 LEU CD2 C N N 197 LEU OXT O N N 198 LEU H H N N 199 LEU H2 H N N 200 LEU HA H N N 201 LEU HB2 H N N 202 LEU HB3 H N N 203 LEU HG H N N 204 LEU HD11 H N N 205 LEU HD12 H N N 206 LEU HD13 H N N 207 LEU HD21 H N N 208 LEU HD22 H N N 209 LEU HD23 H N N 210 LEU HXT H N N 211 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 28J CG2 CB sing N N 1 28J CB CG1 sing N N 2 28J CB CA sing N N 3 28J CG1 CD1 sing N N 4 28J CA N sing N N 5 28J CA C sing N N 6 28J C O doub N N 7 28J N H sing N N 8 28J CA HA sing N N 9 28J CB H22 sing N N 10 28J CG2 H23 sing N N 11 28J CG2 H24 sing N N 12 28J CG2 H25 sing N N 13 28J CG1 H26 sing N N 14 28J CG1 H27 sing N N 15 28J CD1 H28 sing N N 16 28J CD1 H29 sing N N 17 28J CD1 H30 sing N N 18 28J N H2 sing N N 19 28J C OXT sing N N 20 28J OXT HXT sing N N 21 2TL N CA sing N N 22 2TL CA CB sing N N 23 2TL CA C sing N N 24 2TL CB OG1 sing N N 25 2TL CB CG2 sing N N 26 2TL C O doub N N 27 2TL C OXT sing N N 28 2TL N H sing N N 29 2TL N H2 sing N N 30 2TL CA HA sing N N 31 2TL CB HB sing N N 32 2TL OG1 HG1 sing N N 33 2TL CG2 HG21 sing N N 34 2TL CG2 HG22 sing N N 35 2TL CG2 HG23 sing N N 36 2TL OXT HXT sing N N 37 A1H5T CL CK sing N N 38 A1H5T CK CI sing N N 39 A1H5T CI CT sing N N 40 A1H5T CT CH sing N N 41 A1H5T CH CF sing N N 42 A1H5T CF CE sing N N 43 A1H5T CE CD doub N Z 44 A1H5T C O doub N N 45 A1H5T C CA sing N N 46 A1H5T CD CG2 sing N N 47 A1H5T CA CB sing N N 48 A1H5T CG2 CB sing N N 49 A1H5T CB OG1 sing N N 50 A1H5T C O1 sing N N 51 A1H5T CA HA1 sing N N 52 A1H5T CA HA2 sing N N 53 A1H5T CB HB sing N N 54 A1H5T CG2 HG22 sing N N 55 A1H5T CG2 HG21 sing N N 56 A1H5T OG1 HG1 sing N N 57 A1H5T CD HD sing N N 58 A1H5T CE HE sing N N 59 A1H5T CH HH2 sing N N 60 A1H5T CH HH1 sing N N 61 A1H5T CI HI2 sing N N 62 A1H5T CI HI1 sing N N 63 A1H5T CK HK2 sing N N 64 A1H5T CK HK1 sing N N 65 A1H5T CL HL2 sing N N 66 A1H5T CL HL3 sing N N 67 A1H5T CL HL1 sing N N 68 A1H5T CF HF2 sing N N 69 A1H5T CF HF1 sing N N 70 A1H5T CT HT2 sing N N 71 A1H5T CT HT1 sing N N 72 A1H5T O1 H1 sing N N 73 DAS N CA sing N N 74 DAS N H sing N N 75 DAS N H2 sing N N 76 DAS CA C sing N N 77 DAS CA CB sing N N 78 DAS CA HA sing N N 79 DAS C O doub N N 80 DAS C OXT sing N N 81 DAS CB CG sing N N 82 DAS CB HB2 sing N N 83 DAS CB HB3 sing N N 84 DAS CG OD1 doub N N 85 DAS CG OD2 sing N N 86 DAS OD2 HD2 sing N N 87 DAS OXT HXT sing N N 88 DGN N CA sing N N 89 DGN N H sing N N 90 DGN N H2 sing N N 91 DGN CA C sing N N 92 DGN CA CB sing N N 93 DGN CA HA sing N N 94 DGN C O doub N N 95 DGN C OXT sing N N 96 DGN OXT HXT sing N N 97 DGN CB CG sing N N 98 DGN CB HB2 sing N N 99 DGN CB HB3 sing N N 100 DGN CG CD sing N N 101 DGN CG HG2 sing N N 102 DGN CG HG3 sing N N 103 DGN CD OE1 doub N N 104 DGN CD NE2 sing N N 105 DGN NE2 HE21 sing N N 106 DGN NE2 HE22 sing N N 107 DLE N CA sing N N 108 DLE N H sing N N 109 DLE N H2 sing N N 110 DLE CA CB sing N N 111 DLE CA C sing N N 112 DLE CA HA sing N N 113 DLE CB CG sing N N 114 DLE CB HB2 sing N N 115 DLE CB HB3 sing N N 116 DLE CG CD1 sing N N 117 DLE CG CD2 sing N N 118 DLE CG HG sing N N 119 DLE CD1 HD11 sing N N 120 DLE CD1 HD12 sing N N 121 DLE CD1 HD13 sing N N 122 DLE CD2 HD21 sing N N 123 DLE CD2 HD22 sing N N 124 DLE CD2 HD23 sing N N 125 DLE C O doub N N 126 DLE C OXT sing N N 127 DLE OXT HXT sing N N 128 DSN N CA sing N N 129 DSN N H sing N N 130 DSN N H2 sing N N 131 DSN CA C sing N N 132 DSN CA CB sing N N 133 DSN CA HA sing N N 134 DSN C O doub N N 135 DSN C OXT sing N N 136 DSN OXT HXT sing N N 137 DSN CB OG sing N N 138 DSN CB HB2 sing N N 139 DSN CB HB3 sing N N 140 DSN OG HG sing N N 141 GLU N CA sing N N 142 GLU N H sing N N 143 GLU N H2 sing N N 144 GLU CA C sing N N 145 GLU CA CB sing N N 146 GLU CA HA sing N N 147 GLU C O doub N N 148 GLU C OXT sing N N 149 GLU CB CG sing N N 150 GLU CB HB2 sing N N 151 GLU CB HB3 sing N N 152 GLU CG CD sing N N 153 GLU CG HG2 sing N N 154 GLU CG HG3 sing N N 155 GLU CD OE1 doub N N 156 GLU CD OE2 sing N N 157 GLU OE2 HE2 sing N N 158 GLU OXT HXT sing N N 159 ILE N CA sing N N 160 ILE N H sing N N 161 ILE N H2 sing N N 162 ILE CA C sing N N 163 ILE CA CB sing N N 164 ILE CA HA sing N N 165 ILE C O doub N N 166 ILE C OXT sing N N 167 ILE CB CG1 sing N N 168 ILE CB CG2 sing N N 169 ILE CB HB sing N N 170 ILE CG1 CD1 sing N N 171 ILE CG1 HG12 sing N N 172 ILE CG1 HG13 sing N N 173 ILE CG2 HG21 sing N N 174 ILE CG2 HG22 sing N N 175 ILE CG2 HG23 sing N N 176 ILE CD1 HD11 sing N N 177 ILE CD1 HD12 sing N N 178 ILE CD1 HD13 sing N N 179 ILE OXT HXT sing N N 180 LEU N CA sing N N 181 LEU N H sing N N 182 LEU N H2 sing N N 183 LEU CA C sing N N 184 LEU CA CB sing N N 185 LEU CA HA sing N N 186 LEU C O doub N N 187 LEU C OXT sing N N 188 LEU CB CG sing N N 189 LEU CB HB2 sing N N 190 LEU CB HB3 sing N N 191 LEU CG CD1 sing N N 192 LEU CG CD2 sing N N 193 LEU CG HG sing N N 194 LEU CD1 HD11 sing N N 195 LEU CD1 HD12 sing N N 196 LEU CD1 HD13 sing N N 197 LEU CD2 HD21 sing N N 198 LEU CD2 HD22 sing N N 199 LEU CD2 HD23 sing N N 200 LEU OXT HXT sing N N 201 # _pdbx_audit_support.funding_organization 'Research Foundation - Flanders (FWO)' _pdbx_audit_support.country Belgium _pdbx_audit_support.grant_number 'EOS project G0G3118N (EOS ID 30650620)' _pdbx_audit_support.ordinal 1 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE II' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.details 'Prodigy Cryoprobe' # _atom_sites.entry_id 8S8N _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H HG N O # loop_ #