HEADER PROTEIN BINDING 06-MAR-24 8S8O TITLE SOLUTION STRUCTURE OF CAMP-DEPENDENT PROTEIN KINASE RII-ALPHA SUBUNIT TITLE 2 DIMERIZATION AND DOCKING DOMAIN COMPLEX WITH MICROTUBULE ASSOCIATED TITLE 3 PROTEIN 2C (84-111) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE TYPE II-ALPHA REGULATORY COMPND 3 SUBUNIT; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: N-TERMINAL DOCKING AND DIMERIZATION DOMAIN, RESIDUES 1-52; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ISOFORM 3 OF MICROTUBULE-ASSOCIATED PROTEIN 2; COMPND 9 CHAIN: C; COMPND 10 FRAGMENT: N-TERMINAL PKA BINDING REGION, RESIDUES 80-120; COMPND 11 SYNONYM: MAP-2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRKAR2A, PKR2, PRKAR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM11; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 13 ORGANISM_COMMON: NORWAY RAT; SOURCE 14 ORGANISM_TAXID: 10116; SOURCE 15 GENE: MAP2, MTAP2; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_VARIANT: RIPL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS AKAP, PKA, MAP2C, IDP, PROTEIN-PROTEIN COMPLEX, 4-HELIX BUNDLE, KEYWDS 2 MICROTUBULE, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR V.BARTOSIK,A.LANIKOVA,Z.JANACKOVA,P.PADRTA,L.ZIDEK REVDAT 1 25-SEP-24 8S8O 0 JRNL AUTH V.BARTOSIK,J.PLUCAROVA,A.LANIKOVA,Z.JANACKOVA,P.PADRTA, JRNL AUTH 2 S.JANSEN,V.VARECKA,T.GRUBER,S.M.FELLER,L.ZIDEK JRNL TITL STRUCTURAL BASIS OF BINDING THE UNIQUE N-TERMINAL DOMAIN OF JRNL TITL 2 MICROTUBULE-ASSOCIATED PROTEIN 2C TO PROTEINS REGULATING JRNL TITL 3 KINASES OF SIGNALING PATHWAYS. JRNL REF J.BIOL.CHEM. V. 300 07551 2024 JRNL REFN ESSN 1083-351X JRNL PMID 39002671 JRNL DOI 10.1016/J.JBC.2024.107551 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 3, NMRPIPE 11.2, CNS 1.21, SCULPTOR 3.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), DELAGLIO, GRZESIEK, REMARK 3 VUISTER, ZHU, PFEIFER AND BAX (NMRPIPE), BRUNGER, REMARK 3 ADAMS, CLORE, GROS, NILGES AND READ (CNS), REMARK 3 CHARAVAY, EYNARD, HUS, BOUVIGNIES AND BLACKLEDGE REMARK 3 (SCULPTOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MDSA SCULPTOR-CNS TIP3P REMARK 4 REMARK 4 8S8O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1292136217. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300.2 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 BAR REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] REMARK 210 MICROTUBULE ASSOCIATED PROTEIN REMARK 210 2C, 2 MM CAMP-DEPENDENT PROTEIN REMARK 210 KINASE TYPE II-ALPHA REGULATORY REMARK 210 SUBUNIT, 50 MM MOPS, 100 MM REMARK 210 SODIUM CHLORIDE, 10 % V/V D2O, REMARK 210 17 MM SODIUM AZIDE, 90% H2O/10% REMARK 210 D2O; 0.56 MM MICROTUBULE REMARK 210 ASSOCIATED PROTEIN 2C, 1.12 MM REMARK 210 [U-13C; U-15N] CAMP-DEPENDENT REMARK 210 PROTEIN KINASE TYPE II-ALPHA REMARK 210 REGULATORY SUBUNIT, 50 MM MOPS, REMARK 210 100 MM SODIUM CHLORIDE, 10 % V/V REMARK 210 D2O, 10 MM SODIUM AZIDE, 90% H2O/ REMARK 210 10% D2O; 0.1 MM [U-15N] REMARK 210 MICROTUBULE ASSOCIATED PROTEIN REMARK 210 2C, 0.4 MM CAMP-DEPENDENT REMARK 210 PROTEIN KINASE TYPE II-ALPHA REMARK 210 REGULATORY SUBUNIT, 50 MM MOPS, REMARK 210 100 MM SODIUM CHLORIDE, 8 % V/V REMARK 210 D2O, 40 MG/ML PF1 PHAGE, 90% H2O/ REMARK 210 10% D2O; 0.23 MM [U-15N] REMARK 210 MICROTUBULE ASSOCIATED PROTEIN REMARK 210 2C, 0.92 MM CAMP-DEPENDENT REMARK 210 PROTEIN KINASE TYPE II-ALPHA REMARK 210 REGULATORY SUBUNIT, 50 MM MOPS, REMARK 210 100 MM SODIUM CHLORIDE, 7.5 % V/ REMARK 210 V D2O, 90% H2O/10% D2O; 0.45 MM REMARK 210 I,V-13C; I,L,V-15N MICROTUBULE REMARK 210 ASSOCIATED PROTEIN 2C, 1.8 MM REMARK 210 CAMP-DEPENDENT PROTEIN KINASE REMARK 210 TYPE II-ALPHA REGULATORY SUBUNIT, REMARK 210 50 MM MOPS, 100 MM SODIUM REMARK 210 CHLORIDE, 7.5 % V/V D2O, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-15N NOESY REMARK 210 FILTERED; 3D 1H-13C NOESY REMARK 210 ALIPHATIC FILTERED; 2D 1H-15N REMARK 210 HSQC; 2D 1H-15N HSQC IPAP; 3D REMARK 210 HNCA; 3D HN(CO)CA; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 950 MHZ; 850 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.115, CYANA 3.98.15, CNS REMARK 210 1.21, SCULPTOR 3.1 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 7 78.63 -102.68 REMARK 500 1 GLN A 29 69.04 62.93 REMARK 500 1 PRO A 31 -72.00 -75.39 REMARK 500 1 ALA A 49 86.22 69.60 REMARK 500 1 PRO B 12 31.62 -78.85 REMARK 500 1 GLN C 110 26.97 -72.41 REMARK 500 2 MET A 3 75.37 63.16 REMARK 500 2 SER A 6 -36.80 73.41 REMARK 500 2 GLN A 29 66.82 61.97 REMARK 500 2 PRO B 11 90.38 -4.48 REMARK 500 2 ALA B 49 104.11 73.48 REMARK 500 3 GLN A 29 67.75 61.50 REMARK 500 3 ALA A 49 103.26 172.99 REMARK 500 3 ALA B 2 91.48 60.05 REMARK 500 3 GLN B 29 101.14 -160.54 REMARK 500 3 GLU C 85 -82.76 69.03 REMARK 500 4 GLN A 29 68.90 61.83 REMARK 500 4 ARG B 48 75.77 -113.27 REMARK 500 5 ALA A 2 -82.53 -78.51 REMARK 500 5 GLN A 29 70.84 63.42 REMARK 500 5 ALA A 51 -83.11 59.46 REMARK 500 5 ALA B 2 -61.90 -98.47 REMARK 500 5 MET B 5 -103.54 52.33 REMARK 500 5 SER B 6 -168.76 -175.67 REMARK 500 5 GLU C 85 88.05 -155.16 REMARK 500 6 SER A 6 -38.96 70.78 REMARK 500 6 GLN A 29 68.29 62.33 REMARK 500 6 ALA A 49 82.54 59.58 REMARK 500 6 ALA A 51 -53.47 66.58 REMARK 500 6 PRO B 11 84.25 14.16 REMARK 500 6 GLN B 29 74.33 52.70 REMARK 500 7 ALA A 2 -56.37 70.73 REMARK 500 7 GLN A 29 69.00 63.33 REMARK 500 8 GLN A 29 69.45 62.24 REMARK 500 8 ALA A 49 79.39 61.61 REMARK 500 8 ALA B 51 -85.02 69.05 REMARK 500 8 GLU C 85 20.14 46.87 REMARK 500 9 GLN A 29 68.33 61.44 REMARK 500 9 ALA A 49 109.76 -164.91 REMARK 500 9 MET B 5 42.25 -82.24 REMARK 500 9 HIS B 7 134.87 163.32 REMARK 500 10 MET A 5 -37.75 -148.20 REMARK 500 10 GLN A 29 68.19 61.23 REMARK 500 10 PRO B 11 93.04 9.22 REMARK 500 10 GLN B 29 73.78 42.26 REMARK 500 10 ALA B 51 7.75 -161.53 REMARK 500 11 MET A 3 115.82 66.74 REMARK 500 11 SER A 6 103.27 67.07 REMARK 500 11 GLN A 29 70.03 61.41 REMARK 500 11 ALA A 49 83.02 63.86 REMARK 500 REMARK 500 THIS ENTRY HAS 105 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 ARG A 45 0.08 SIDE CHAIN REMARK 500 3 ARG B 45 0.09 SIDE CHAIN REMARK 500 12 ARG B 45 0.08 SIDE CHAIN REMARK 500 13 ARG A 45 0.11 SIDE CHAIN REMARK 500 15 ARG A 43 0.07 SIDE CHAIN REMARK 500 18 ARG B 43 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34908 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF CAMP-DEPENDENT PROTEIN KINASE RII-ALPHA REMARK 900 SUBUNIT DIMERIZATION AND DOCKING DOMAIN COMPLEX WITH MICROTUBULE REMARK 900 ASSOCIATED PROTEIN 2C (84-111) DBREF 8S8O A 5 52 UNP P13861 KAP2_HUMAN 1 48 DBREF 8S8O B 5 52 UNP P13861 KAP2_HUMAN 1 48 DBREF 8S8O C 84 111 UNP P15146 MTAP2_RAT 84 111 SEQADV 8S8O GLY A 1 UNP P13861 EXPRESSION TAG SEQADV 8S8O ALA A 2 UNP P13861 EXPRESSION TAG SEQADV 8S8O MET A 3 UNP P13861 EXPRESSION TAG SEQADV 8S8O GLY A 4 UNP P13861 EXPRESSION TAG SEQADV 8S8O GLY B 1 UNP P13861 EXPRESSION TAG SEQADV 8S8O ALA B 2 UNP P13861 EXPRESSION TAG SEQADV 8S8O MET B 3 UNP P13861 EXPRESSION TAG SEQADV 8S8O GLY B 4 UNP P13861 EXPRESSION TAG SEQRES 1 A 52 GLY ALA MET GLY MET SER HIS ILE GLN ILE PRO PRO GLY SEQRES 2 A 52 LEU THR GLU LEU LEU GLN GLY TYR THR VAL GLU VAL LEU SEQRES 3 A 52 ARG GLN GLN PRO PRO ASP LEU VAL GLU PHE ALA VAL GLU SEQRES 4 A 52 TYR PHE THR ARG LEU ARG GLU ALA ARG ALA PRO ALA SER SEQRES 1 B 52 GLY ALA MET GLY MET SER HIS ILE GLN ILE PRO PRO GLY SEQRES 2 B 52 LEU THR GLU LEU LEU GLN GLY TYR THR VAL GLU VAL LEU SEQRES 3 B 52 ARG GLN GLN PRO PRO ASP LEU VAL GLU PHE ALA VAL GLU SEQRES 4 B 52 TYR PHE THR ARG LEU ARG GLU ALA ARG ALA PRO ALA SER SEQRES 1 C 28 ARG GLU THR ALA GLU GLU VAL SER ALA ARG ILE VAL GLN SEQRES 2 C 28 VAL VAL THR ALA GLU ALA VAL ALA VAL LEU LYS GLY GLU SEQRES 3 C 28 GLN GLU HELIX 1 AA1 GLY A 13 GLN A 28 1 16 HELIX 2 AA2 ASP A 32 ALA A 49 1 18 HELIX 3 AA3 GLY B 13 GLN B 29 1 17 HELIX 4 AA4 ASP B 32 ARG B 48 1 17 HELIX 5 AA5 THR C 86 GLY C 108 1 23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1