HEADER TRANSFERASE 27-MAR-23 8S93 TITLE CRYSTAL STRUCTURE OF THE PH-TH/KINASE COMPLEX OF BRUTON'S TYROSINE TITLE 2 KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE BTK; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PHTH DOMAIN RESIDUES 1-171 AND KINASE DOMAIN RESIDUES 396- COMPND 5 659; COMPND 6 SYNONYM: AGAMMAGLOBULINEMIA TYROSINE KINASE,ATK,B-CELL PROGENITOR COMPND 7 KINASE,BPK,BRUTON TYROSINE KINASE,KINASE EMB; COMPND 8 EC: 2.7.10.2; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: BTK, BPK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BRUTON'S TYROSINE KINASE, NON-RECEPTOR TYROSINE KINASE, COMPLEX, KEYWDS 2 LIPID-BINDING, ATP-BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.Y.LIN,A.H.ANDREOTTI REVDAT 3 31-JAN-24 8S93 1 JRNL REVDAT 2 24-JAN-24 8S93 1 JRNL REVDAT 1 16-AUG-23 8S93 0 JRNL AUTH D.Y.LIN,L.E.KUEFFER,P.JUNEJA,T.E.WALES,J.R.ENGEN, JRNL AUTH 2 A.H.ANDREOTTI JRNL TITL CONFORMATIONAL HETEROGENEITY OF THE BTK PHTH DOMAIN DRIVES JRNL TITL 2 MULTIPLE REGULATORY STATES. JRNL REF ELIFE V. 12 2024 JRNL REFN ESSN 2050-084X JRNL PMID 38189455 JRNL DOI 10.7554/ELIFE.89489 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 76.8 REMARK 3 NUMBER OF REFLECTIONS : 21392 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7100 - 4.1900 1.00 3362 172 0.1740 0.2033 REMARK 3 2 4.1900 - 3.3300 1.00 3326 160 0.1600 0.1930 REMARK 3 3 3.3300 - 2.9100 1.00 3311 186 0.2032 0.2887 REMARK 3 4 2.9100 - 2.6500 0.99 3228 184 0.2450 0.2794 REMARK 3 5 2.6500 - 2.4600 0.89 2929 158 0.2582 0.3201 REMARK 3 6 2.4600 - 2.3100 0.67 2216 123 0.2467 0.2994 REMARK 3 7 2.3100 - 2.2000 0.35 1154 72 0.2686 0.3428 REMARK 3 8 2.2000 - 2.1000 0.24 768 43 0.2769 0.3194 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.261 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3676 REMARK 3 ANGLE : 0.489 4974 REMARK 3 CHIRALITY : 0.039 517 REMARK 3 PLANARITY : 0.003 633 REMARK 3 DIHEDRAL : 17.435 537 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6907 11.9267 -9.4568 REMARK 3 T TENSOR REMARK 3 T11: 0.4548 T22: 0.5228 REMARK 3 T33: 0.3594 T12: 0.0053 REMARK 3 T13: -0.0416 T23: 0.0776 REMARK 3 L TENSOR REMARK 3 L11: 1.6549 L22: 1.3789 REMARK 3 L33: 1.9325 L12: 0.2805 REMARK 3 L13: -0.1710 L23: -0.0210 REMARK 3 S TENSOR REMARK 3 S11: -0.0075 S12: 0.3043 S13: 0.0685 REMARK 3 S21: -0.2312 S22: -0.0629 S23: 0.2073 REMARK 3 S31: 0.2604 S32: -0.0934 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4823 6.9534 -16.3400 REMARK 3 T TENSOR REMARK 3 T11: 0.4961 T22: 1.0800 REMARK 3 T33: 0.5302 T12: 0.0990 REMARK 3 T13: 0.2091 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 0.1860 L22: 0.1098 REMARK 3 L33: 0.0952 L12: -0.0483 REMARK 3 L13: 0.0766 L23: -0.1035 REMARK 3 S TENSOR REMARK 3 S11: 0.0799 S12: 0.4871 S13: 0.0539 REMARK 3 S21: -0.2580 S22: -0.1785 S23: 0.0291 REMARK 3 S31: 0.2789 S32: -0.1873 S33: 0.0006 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9223 3.2183 -2.3911 REMARK 3 T TENSOR REMARK 3 T11: 0.4565 T22: 0.4928 REMARK 3 T33: 0.3396 T12: 0.0383 REMARK 3 T13: 0.0491 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 1.3354 L22: 1.2019 REMARK 3 L33: 1.8791 L12: -0.5557 REMARK 3 L13: -0.4658 L23: -0.5911 REMARK 3 S TENSOR REMARK 3 S11: -0.1135 S12: 0.2436 S13: -0.2387 REMARK 3 S21: -0.0896 S22: -0.0739 S23: -0.1614 REMARK 3 S31: 0.5525 S32: 0.6593 S33: 0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 407 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6840 2.6987 6.9301 REMARK 3 T TENSOR REMARK 3 T11: 0.4747 T22: 0.4159 REMARK 3 T33: 0.3417 T12: 0.0501 REMARK 3 T13: 0.0397 T23: 0.0420 REMARK 3 L TENSOR REMARK 3 L11: 1.2880 L22: 0.7309 REMARK 3 L33: 1.2637 L12: 0.4650 REMARK 3 L13: -0.1974 L23: -0.8186 REMARK 3 S TENSOR REMARK 3 S11: -0.1433 S12: 0.0413 S13: -0.1412 REMARK 3 S21: -0.5342 S22: 0.2340 S23: 0.1017 REMARK 3 S31: 0.2367 S32: 0.5992 S33: 0.0004 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 408 THROUGH 494 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5980 6.5644 24.8101 REMARK 3 T TENSOR REMARK 3 T11: 0.1734 T22: 0.1714 REMARK 3 T33: 0.1969 T12: 0.0028 REMARK 3 T13: -0.0242 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 1.5013 L22: 1.2498 REMARK 3 L33: 0.8096 L12: 0.9292 REMARK 3 L13: -0.0961 L23: -0.1936 REMARK 3 S TENSOR REMARK 3 S11: -0.0652 S12: 0.1061 S13: 0.1805 REMARK 3 S21: -0.1947 S22: 0.1010 S23: 0.0528 REMARK 3 S31: 0.0011 S32: 0.0627 S33: 0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 495 THROUGH 515 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6400 -12.1798 25.1961 REMARK 3 T TENSOR REMARK 3 T11: 0.2091 T22: 0.1899 REMARK 3 T33: 0.2076 T12: -0.0004 REMARK 3 T13: -0.0046 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.0833 L22: 0.5594 REMARK 3 L33: 0.5332 L12: -0.1260 REMARK 3 L13: -0.1628 L23: -0.0824 REMARK 3 S TENSOR REMARK 3 S11: -0.0195 S12: 0.2240 S13: 0.0873 REMARK 3 S21: -0.2711 S22: 0.1202 S23: 0.1690 REMARK 3 S31: 0.4145 S32: -0.0687 S33: 0.0101 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 516 THROUGH 575 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1503 -3.8813 35.1060 REMARK 3 T TENSOR REMARK 3 T11: 0.2204 T22: 0.1637 REMARK 3 T33: 0.2016 T12: -0.0220 REMARK 3 T13: 0.0013 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 1.7183 L22: 1.9347 REMARK 3 L33: 0.5107 L12: 0.1781 REMARK 3 L13: -0.8732 L23: 0.2696 REMARK 3 S TENSOR REMARK 3 S11: 0.0092 S12: -0.0597 S13: 0.0183 REMARK 3 S21: -0.0059 S22: -0.0194 S23: -0.2570 REMARK 3 S31: -0.1123 S32: 0.1994 S33: -0.0022 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 576 THROUGH 623 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3385 -12.2631 43.9567 REMARK 3 T TENSOR REMARK 3 T11: 0.1545 T22: 0.1617 REMARK 3 T33: 0.1651 T12: 0.0223 REMARK 3 T13: -0.0175 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.2771 L22: 1.4321 REMARK 3 L33: 1.3027 L12: 0.6451 REMARK 3 L13: 0.4656 L23: -0.6151 REMARK 3 S TENSOR REMARK 3 S11: -0.0154 S12: -0.3158 S13: 0.0046 REMARK 3 S21: 0.2786 S22: 0.0462 S23: -0.0220 REMARK 3 S31: -0.1487 S32: -0.0242 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 624 THROUGH 659 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1827 -21.8593 32.9546 REMARK 3 T TENSOR REMARK 3 T11: 0.2200 T22: 0.1279 REMARK 3 T33: 0.2851 T12: -0.0129 REMARK 3 T13: 0.0141 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.9588 L22: 1.6077 REMARK 3 L33: 2.3218 L12: 0.2247 REMARK 3 L13: -1.2480 L23: 0.2991 REMARK 3 S TENSOR REMARK 3 S11: 0.0211 S12: 0.1308 S13: -0.5367 REMARK 3 S21: -0.1351 S22: 0.0308 S23: -0.0011 REMARK 3 S31: 0.1620 S32: -0.1419 S33: 0.0053 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8S93 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000273217. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4-5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03322 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21684 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.001 REMARK 200 RESOLUTION RANGE LOW (A) : 81.527 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 67.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 13.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.80300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: CLUSTERS OF THIN PLATES AND NEEDLES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%PEG3350, 0.1M BIS-TRIS, PH5.6, 0.2M REMARK 280 MAGNESIUM CHLORIDE, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.69150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 17 REMARK 465 LYS A 18 REMARK 465 GLU A 84 REMARK 465 GLU A 85 REMARK 465 SER A 86 REMARK 465 SER A 87 REMARK 465 GLU A 88 REMARK 465 MET A 89 REMARK 465 GLU A 90 REMARK 465 ALA A 91 REMARK 465 ALA A 92 REMARK 465 SER A 93 REMARK 465 ALA A 94 REMARK 465 GLY A 378 REMARK 465 GLY A 379 REMARK 465 GLY A 380 REMARK 465 GLY A 381 REMARK 465 SER A 382 REMARK 465 GLY A 383 REMARK 465 GLY A 384 REMARK 465 GLY A 385 REMARK 465 GLY A 386 REMARK 465 SER A 387 REMARK 465 GLY A 388 REMARK 465 GLY A 389 REMARK 465 GLY A 390 REMARK 465 GLY A 391 REMARK 465 SER A 392 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 THR A 20 OG1 CG2 REMARK 470 SER A 21 OG REMARK 470 ASN A 72 CG OD1 ND2 REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 GLU A 119 CG CD OE1 OE2 REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 ASP A 149 CG OD1 OD2 REMARK 470 GLU A 169 CG CD OE1 OE2 REMARK 470 GLU A 455 CG CD OE1 OE2 REMARK 470 SER A 659 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 63 147.15 -171.47 REMARK 500 GLN A 424 -58.66 -152.49 REMARK 500 GLN A 424 -58.67 -152.49 REMARK 500 LYS A 466 52.12 -109.49 REMARK 500 ARG A 520 -3.13 72.28 REMARK 500 ASP A 521 50.82 -157.42 REMARK 500 GLU A 658 41.62 -73.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 978 DISTANCE = 6.12 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 143 ND1 REMARK 620 2 CYS A 154 SG 112.4 REMARK 620 3 CYS A 155 SG 97.4 101.2 REMARK 620 4 CYS A 165 SG 126.6 79.5 132.5 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8GMB RELATED DB: PDB REMARK 900 RELATED ID: 8S9F RELATED DB: PDB DBREF 8S93 A 1 171 UNP P35991 BTK_MOUSE 1 171 DBREF 8S93 A 396 659 UNP P35991 BTK_MOUSE 396 659 SEQADV 8S93 ALA A 91 UNP P35991 GLN 91 ENGINEERED MUTATION SEQADV 8S93 ALA A 92 UNP P35991 ILE 92 ENGINEERED MUTATION SEQADV 8S93 ALA A 94 UNP P35991 ILE 94 ENGINEERED MUTATION SEQADV 8S93 ALA A 95 UNP P35991 ILE 95 ENGINEERED MUTATION SEQADV 8S93 GLY A 172 UNP P35991 LINKER SEQADV 8S93 GLY A 173 UNP P35991 LINKER SEQADV 8S93 GLY A 174 UNP P35991 LINKER SEQADV 8S93 SER A 175 UNP P35991 LINKER SEQADV 8S93 GLY A 378 UNP P35991 LINKER SEQADV 8S93 GLY A 379 UNP P35991 LINKER SEQADV 8S93 GLY A 380 UNP P35991 LINKER SEQADV 8S93 GLY A 381 UNP P35991 LINKER SEQADV 8S93 SER A 382 UNP P35991 LINKER SEQADV 8S93 GLY A 383 UNP P35991 LINKER SEQADV 8S93 GLY A 384 UNP P35991 LINKER SEQADV 8S93 GLY A 385 UNP P35991 LINKER SEQADV 8S93 GLY A 386 UNP P35991 LINKER SEQADV 8S93 SER A 387 UNP P35991 LINKER SEQADV 8S93 GLY A 388 UNP P35991 LINKER SEQADV 8S93 GLY A 389 UNP P35991 LINKER SEQADV 8S93 GLY A 390 UNP P35991 LINKER SEQADV 8S93 GLY A 391 UNP P35991 LINKER SEQADV 8S93 SER A 392 UNP P35991 LINKER SEQADV 8S93 GLY A 393 UNP P35991 LINKER SEQADV 8S93 GLY A 394 UNP P35991 LINKER SEQADV 8S93 GLY A 395 UNP P35991 LINKER SEQADV 8S93 ARG A 430 UNP P35991 LYS 430 ENGINEERED MUTATION SEQADV 8S93 MET A 542 UNP P35991 LEU 542 ENGINEERED MUTATION SEQADV 8S93 THR A 543 UNP P35991 SER 543 ENGINEERED MUTATION SEQADV 8S93 THR A 555 UNP P35991 VAL 555 ENGINEERED MUTATION SEQADV 8S93 LYS A 562 UNP P35991 ARG 562 ENGINEERED MUTATION SEQADV 8S93 ALA A 564 UNP P35991 SER 564 ENGINEERED MUTATION SEQADV 8S93 SER A 565 UNP P35991 PRO 565 ENGINEERED MUTATION SEQADV 8S93 PRO A 617 UNP P35991 TYR 617 ENGINEERED MUTATION SEQRES 1 A 457 MET ALA ALA VAL ILE LEU GLU SER ILE PHE LEU LYS ARG SEQRES 2 A 457 SER GLN GLN LYS LYS LYS THR SER PRO LEU ASN PHE LYS SEQRES 3 A 457 LYS ARG LEU PHE LEU LEU THR VAL HIS LYS LEU SER TYR SEQRES 4 A 457 TYR GLU TYR ASP PHE GLU ARG GLY ARG ARG GLY SER LYS SEQRES 5 A 457 LYS GLY SER ILE ASP VAL GLU LYS ILE THR CYS VAL GLU SEQRES 6 A 457 THR VAL ILE PRO GLU LYS ASN PRO PRO PRO GLU ARG GLN SEQRES 7 A 457 ILE PRO ARG ARG GLY GLU GLU SER SER GLU MET GLU ALA SEQRES 8 A 457 ALA SER ALA ALA GLU ARG PHE PRO TYR PRO PHE GLN VAL SEQRES 9 A 457 VAL TYR ASP GLU GLY PRO LEU TYR VAL PHE SER PRO THR SEQRES 10 A 457 GLU GLU LEU ARG LYS ARG TRP ILE HIS GLN LEU LYS ASN SEQRES 11 A 457 VAL ILE ARG TYR ASN SER ASP LEU VAL GLN LYS TYR HIS SEQRES 12 A 457 PRO CYS PHE TRP ILE ASP GLY GLN TYR LEU CYS CYS SER SEQRES 13 A 457 GLN THR ALA LYS ASN ALA MET GLY CYS GLN ILE LEU GLU SEQRES 14 A 457 ASN ARG GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY SEQRES 15 A 457 GLY GLY SER GLY GLY GLY GLY SER GLY GLY GLY GLU ILE SEQRES 16 A 457 ASP PRO LYS ASP LEU THR PHE LEU LYS GLU LEU GLY THR SEQRES 17 A 457 GLY GLN PHE GLY VAL VAL LYS TYR GLY LYS TRP ARG GLY SEQRES 18 A 457 GLN TYR ASP VAL ALA ILE ARG MET ILE ARG GLU GLY SER SEQRES 19 A 457 MET SER GLU ASP GLU PHE ILE GLU GLU ALA LYS VAL MET SEQRES 20 A 457 MET ASN LEU SER HIS GLU LYS LEU VAL GLN LEU TYR GLY SEQRES 21 A 457 VAL CYS THR LYS GLN ARG PRO ILE PHE ILE ILE THR GLU SEQRES 22 A 457 TYR MET ALA ASN GLY CYS LEU LEU ASN TYR LEU ARG GLU SEQRES 23 A 457 MET ARG HIS ARG PHE GLN THR GLN GLN LEU LEU GLU MET SEQRES 24 A 457 CYS LYS ASP VAL CYS GLU ALA MET GLU TYR LEU GLU SER SEQRES 25 A 457 LYS GLN PHE LEU HIS ARG ASP LEU ALA ALA ARG ASN CYS SEQRES 26 A 457 LEU VAL ASN ASP GLN GLY VAL VAL LYS VAL SER ASP PHE SEQRES 27 A 457 GLY MET THR ARG TYR VAL LEU ASP ASP GLU TYR THR SER SEQRES 28 A 457 SER THR GLY SER LYS PHE PRO VAL LYS TRP ALA SER PRO SEQRES 29 A 457 GLU VAL LEU MET TYR SER LYS PHE SER SER LYS SER ASP SEQRES 30 A 457 ILE TRP ALA PHE GLY VAL LEU MET TRP GLU ILE TYR SER SEQRES 31 A 457 LEU GLY LYS MET PRO TYR GLU ARG PHE THR ASN SER GLU SEQRES 32 A 457 THR ALA GLU HIS ILE ALA GLN GLY LEU ARG LEU PRO ARG SEQRES 33 A 457 PRO HIS LEU ALA SER GLU ARG VAL TYR THR ILE MET TYR SEQRES 34 A 457 SER CYS TRP HIS GLU LYS ALA ASP GLU ARG PRO SER PHE SEQRES 35 A 457 LYS ILE LEU LEU SER ASN ILE LEU ASP VAL MET ASP GLU SEQRES 36 A 457 GLU SER HET 9AJ A 701 93 HET ZN A 702 1 HET GOL A 703 14 HETNAM 9AJ 2-[3'-(HYDROXYMETHYL)-1-METHYL-5-({5-[(2S)-2-METHYL-4- HETNAM 2 9AJ (OXETAN-3-YL)PIPERAZIN-1-YL]PYRIDIN-2-YL}AMINO)-6- HETNAM 3 9AJ OXO[1,6-DIHYDRO[3,4'-BIPYRIDINE]]-2'-YL]-7,7-DIMETHYL- HETNAM 4 9AJ 3,4,7,8-TETRAHYDRO-2H-CYCLOPENTA[4,5]PYRROLO[1,2- HETNAM 5 9AJ A]PYRAZIN-1(6H)-ONE HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 9AJ C37 H44 N8 O4 FORMUL 3 ZN ZN 2+ FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *178(H2 O) HELIX 1 AA1 PRO A 74 GLN A 78 5 5 HELIX 2 AA2 THR A 117 ARG A 133 1 17 HELIX 3 AA3 ASP A 398 LYS A 400 5 3 HELIX 4 AA4 SER A 438 MET A 450 1 13 HELIX 5 AA5 LEU A 482 GLU A 488 1 7 HELIX 6 AA6 GLN A 494 LYS A 515 1 22 HELIX 7 AA7 ALA A 523 ARG A 525 5 3 HELIX 8 AA8 GLY A 541 VAL A 546 5 6 HELIX 9 AA9 ASP A 548 SER A 553 1 6 HELIX 10 AB1 PRO A 560 ALA A 564 5 5 HELIX 11 AB2 SER A 565 SER A 572 1 8 HELIX 12 AB3 SER A 575 LEU A 593 1 19 HELIX 13 AB4 THR A 602 ALA A 611 1 10 HELIX 14 AB5 SER A 623 CYS A 633 1 11 HELIX 15 AB6 LYS A 637 ARG A 641 5 5 HELIX 16 AB7 SER A 643 GLU A 658 1 16 SHEET 1 AA1 7 ARG A 48 ASP A 57 0 SHEET 2 AA1 7 LYS A 36 ASP A 43 -1 N GLU A 41 O GLY A 50 SHEET 3 AA1 7 PHE A 25 LEU A 32 -1 N LEU A 31 O SER A 38 SHEET 4 AA1 7 LEU A 6 ARG A 13 -1 N PHE A 10 O ARG A 28 SHEET 5 AA1 7 PRO A 110 SER A 115 -1 O PHE A 114 N LEU A 11 SHEET 6 AA1 7 TYR A 100 TYR A 106 -1 N TYR A 100 O SER A 115 SHEET 7 AA1 7 ILE A 61 THR A 66 -1 N GLU A 65 O GLN A 103 SHEET 1 AA2 2 LYS A 141 TYR A 142 0 SHEET 2 AA2 2 GLN A 166 ILE A 167 -1 O GLN A 166 N TYR A 142 SHEET 1 AA3 2 TRP A 147 ILE A 148 0 SHEET 2 AA3 2 GLN A 151 TYR A 152 -1 O GLN A 151 N ILE A 148 SHEET 1 AA4 5 LEU A 402 THR A 410 0 SHEET 2 AA4 5 VAL A 415 TRP A 421 -1 O TYR A 418 N LYS A 406 SHEET 3 AA4 5 TYR A 425 MET A 431 -1 O ILE A 429 N LYS A 417 SHEET 4 AA4 5 PHE A 471 THR A 474 -1 O THR A 474 N ALA A 428 SHEET 5 AA4 5 LEU A 460 CYS A 464 -1 N TYR A 461 O ILE A 473 SHEET 1 AA5 3 GLY A 480 CYS A 481 0 SHEET 2 AA5 3 CYS A 527 VAL A 529 -1 O VAL A 529 N GLY A 480 SHEET 3 AA5 3 VAL A 535 VAL A 537 -1 O LYS A 536 N LEU A 528 SSBOND 1 CYS A 154 CYS A 165 1555 1555 2.97 LINK ND1 HIS A 143 ZN ZN A 702 1555 1555 2.06 LINK SG CYS A 154 ZN ZN A 702 1555 1555 2.33 LINK SG CYS A 155 ZN ZN A 702 1555 1555 2.35 LINK SG CYS A 165 ZN ZN A 702 1555 1555 2.31 CISPEP 1 ARG A 468 PRO A 469 0 -0.72 CRYST1 38.376 77.383 82.323 90.00 97.98 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026058 0.000000 0.003653 0.00000 SCALE2 0.000000 0.012923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012266 0.00000