HEADER TRANSFERASE/INHIBITOR 29-MAR-23 8S9N TITLE DNA CYTOSINE-N4 METHYLTRANSFERASE (RESIDUES 61-324) FROM THE BDELLOID TITLE 2 ROTIFER ADINETA VAGA - C2 CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA CYTOSINE-N4 METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: METHYLTRANSFERASE DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ADINETA VAGA; SOURCE 3 ORGANISM_TAXID: 104782; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: CODONPLUS KEYWDS DNA CYTOSINE METHYLATION, PROTEIN-DNA COMPLEX, TRANSFERASE, DNA KEYWDS 2 BINDING PROTEIN, TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.ZHOU,J.R.HORTON,X.CHENG REVDAT 2 16-AUG-23 8S9N 1 JRNL REVDAT 1 02-AUG-23 8S9N 0 JRNL AUTH J.ZHOU,J.R.HORTON,G.KAUR,Q.CHEN,X.LI,F.MENDOZA,T.WU, JRNL AUTH 2 R.M.BLUMENTHAL,X.ZHANG,X.CHENG JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF THE JRNL TITL 2 FIRST-DISCOVERED METAZOAN DNA CYTOSINE-N4 METHYLTRANSFERASE JRNL TITL 3 FROM THE BDELLOID ROTIFER ADINETA VAGA. JRNL REF J.BIOL.CHEM. V. 299 05017 2023 JRNL REFN ESSN 1083-351X JRNL PMID 37414145 JRNL DOI 10.1016/J.JBC.2023.105017 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 21653 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.2300 - 3.7800 1.00 2696 116 0.1636 0.1829 REMARK 3 2 3.7800 - 3.0000 1.00 2603 138 0.1875 0.2285 REMARK 3 3 3.0000 - 2.6200 1.00 2622 132 0.2025 0.2166 REMARK 3 4 2.6200 - 2.3800 1.00 2587 146 0.2189 0.2420 REMARK 3 5 2.3800 - 2.2100 0.99 2580 154 0.2462 0.2684 REMARK 3 6 2.2100 - 2.0800 0.99 2583 134 0.3061 0.3505 REMARK 3 7 2.0800 - 1.9800 0.98 2592 132 0.3538 0.4011 REMARK 3 8 1.9800 - 1.8900 0.89 2296 142 0.4068 0.3863 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.264 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.471 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1872 REMARK 3 ANGLE : 0.655 2542 REMARK 3 CHIRALITY : 0.046 278 REMARK 3 PLANARITY : 0.006 335 REMARK 3 DIHEDRAL : 11.850 682 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3638 -0.2608 28.6224 REMARK 3 T TENSOR REMARK 3 T11: 0.6046 T22: 0.7810 REMARK 3 T33: 0.5045 T12: 0.1132 REMARK 3 T13: -0.0649 T23: 0.0421 REMARK 3 L TENSOR REMARK 3 L11: 3.8390 L22: 5.5787 REMARK 3 L33: 3.7157 L12: 1.3565 REMARK 3 L13: -0.6125 L23: 0.2483 REMARK 3 S TENSOR REMARK 3 S11: 0.2929 S12: -0.4399 S13: -0.6652 REMARK 3 S21: 0.5604 S22: -0.5064 S23: -0.2261 REMARK 3 S31: 0.8538 S32: 0.8590 S33: 0.2219 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1799 -0.4491 17.0962 REMARK 3 T TENSOR REMARK 3 T11: 0.5364 T22: 0.5389 REMARK 3 T33: 0.5279 T12: 0.1242 REMARK 3 T13: -0.1396 T23: -0.0530 REMARK 3 L TENSOR REMARK 3 L11: 6.7742 L22: 3.5938 REMARK 3 L33: 6.1375 L12: 0.4307 REMARK 3 L13: -3.5631 L23: -2.0252 REMARK 3 S TENSOR REMARK 3 S11: -0.0527 S12: 0.2049 S13: -1.0137 REMARK 3 S21: -0.4022 S22: -0.0532 S23: -0.2766 REMARK 3 S31: 1.2301 S32: 0.4474 S33: 0.0781 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4457 1.0018 10.6984 REMARK 3 T TENSOR REMARK 3 T11: 0.5840 T22: 0.4366 REMARK 3 T33: 0.5718 T12: 0.0648 REMARK 3 T13: -0.0667 T23: -0.0512 REMARK 3 L TENSOR REMARK 3 L11: 3.4328 L22: 6.6295 REMARK 3 L33: 4.6552 L12: -1.0365 REMARK 3 L13: 1.8669 L23: -2.4625 REMARK 3 S TENSOR REMARK 3 S11: 0.4495 S12: 0.3212 S13: -0.9129 REMARK 3 S21: -0.8458 S22: -0.2234 S23: -0.4283 REMARK 3 S31: 1.1922 S32: 0.2896 S33: -0.1984 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 195 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9515 13.2118 7.1665 REMARK 3 T TENSOR REMARK 3 T11: 0.2917 T22: 0.2958 REMARK 3 T33: 0.3808 T12: -0.0171 REMARK 3 T13: 0.0004 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 2.1943 L22: 0.3958 REMARK 3 L33: 8.6952 L12: -0.3708 REMARK 3 L13: -1.1132 L23: -0.8499 REMARK 3 S TENSOR REMARK 3 S11: 0.1138 S12: 0.0359 S13: -0.1198 REMARK 3 S21: -0.0721 S22: 0.1462 S23: -0.0499 REMARK 3 S31: 0.1394 S32: 0.1841 S33: -0.2679 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 245 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2640 17.8454 8.1218 REMARK 3 T TENSOR REMARK 3 T11: 0.6496 T22: 1.5352 REMARK 3 T33: 0.7658 T12: -0.1033 REMARK 3 T13: 0.0800 T23: -0.0572 REMARK 3 L TENSOR REMARK 3 L11: 9.8176 L22: 2.0648 REMARK 3 L33: 8.7723 L12: -4.1456 REMARK 3 L13: 1.9023 L23: -6.0619 REMARK 3 S TENSOR REMARK 3 S11: 0.6918 S12: 0.5443 S13: 1.2185 REMARK 3 S21: 0.0096 S22: -1.1215 S23: -1.8776 REMARK 3 S31: -0.3091 S32: 3.2156 S33: 0.5048 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 259 THROUGH 303 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4303 12.6566 20.9704 REMARK 3 T TENSOR REMARK 3 T11: 0.3083 T22: 0.4194 REMARK 3 T33: 0.3096 T12: -0.0358 REMARK 3 T13: 0.0013 T23: -0.0467 REMARK 3 L TENSOR REMARK 3 L11: 5.0271 L22: 3.1443 REMARK 3 L33: 6.3670 L12: -0.0743 REMARK 3 L13: 0.3351 L23: -1.8279 REMARK 3 S TENSOR REMARK 3 S11: 0.2002 S12: -0.4882 S13: 0.0729 REMARK 3 S21: 0.0954 S22: -0.0934 S23: -0.2771 REMARK 3 S31: -0.1583 S32: 0.9175 S33: -0.1084 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 304 THROUGH 324 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6980 18.2065 19.8430 REMARK 3 T TENSOR REMARK 3 T11: 0.4669 T22: 0.8552 REMARK 3 T33: 0.5312 T12: -0.1336 REMARK 3 T13: 0.0133 T23: 0.0506 REMARK 3 L TENSOR REMARK 3 L11: 9.4186 L22: 6.4473 REMARK 3 L33: 5.8343 L12: -6.0300 REMARK 3 L13: 4.4089 L23: -3.4034 REMARK 3 S TENSOR REMARK 3 S11: -0.2104 S12: 0.2157 S13: 0.7675 REMARK 3 S21: 0.1112 S22: -0.0646 S23: -0.9248 REMARK 3 S31: -0.6495 S32: 1.6108 S33: 0.4041 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8S9N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-23. REMARK 100 THE DEPOSITION ID IS D_1000273250. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9201 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21990 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 52.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE, 0.1 M BIS-TRIS REMARK 280 PH 6.5, 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.71300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.14250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.71300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.14250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 521 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 555 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 60 REMARK 465 HIS A 61 REMARK 465 ARG A 62 REMARK 465 GLU A 63 REMARK 465 SER A 64 REMARK 465 SER A 65 REMARK 465 LEU A 66 REMARK 465 SER A 67 REMARK 465 ASN A 111 REMARK 465 LYS A 112 REMARK 465 LEU A 113 REMARK 465 GLY A 114 REMARK 465 LEU A 115 REMARK 465 ARG A 116 REMARK 465 GLU A 117 REMARK 465 GLY A 118 REMARK 465 ARG A 119 REMARK 465 PRO A 120 REMARK 465 TYR A 121 REMARK 465 LEU A 122 REMARK 465 GLY A 123 REMARK 465 GLN A 124 REMARK 465 ILE A 125 REMARK 465 ILE A 126 REMARK 465 TYR A 127 REMARK 465 ASP A 128 REMARK 465 THR A 129 REMARK 465 TYR A 130 REMARK 465 ASP A 131 REMARK 465 ASP A 132 REMARK 465 ASN A 133 REMARK 465 MET A 134 REMARK 465 ASP A 166 REMARK 465 ARG A 167 REMARK 465 ARG A 168 REMARK 465 PHE A 169 REMARK 465 CYS A 170 REMARK 465 LYS A 171 REMARK 465 ARG A 172 REMARK 465 ASP A 173 REMARK 465 HIS A 174 REMARK 465 LEU A 325 REMARK 465 GLU A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 GLU A 136 CG CD OE1 OE2 REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 ARG A 244 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 ARG A 250 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 LYS A 318 CG CD CE NZ REMARK 470 LYS A 320 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 255 70.51 -158.44 REMARK 500 LYS A 318 32.66 -95.96 REMARK 500 REMARK 500 REMARK: NULL DBREF 8S9N A 60 332 PDB 8S9N 8S9N 60 332 SEQRES 1 A 273 MET HIS ARG GLU SER SER LEU SER ASN SER ASP SER PHE SEQRES 2 A 273 GLN LYS LYS LYS LEU LYS SER PHE THR ASN LYS TYR VAL SEQRES 3 A 273 VAL LEU ASP SER LEU GLU GLY LEU ARG SER LEU PRO ASP SEQRES 4 A 273 ASN SER VAL GLN CYS VAL VAL THR SER PRO PRO TYR ASN SEQRES 5 A 273 LYS LEU GLY LEU ARG GLU GLY ARG PRO TYR LEU GLY GLN SEQRES 6 A 273 ILE ILE TYR ASP THR TYR ASP ASP ASN MET ASN GLU ASP SEQRES 7 A 273 ASP TYR GLN LYS TRP GLN LEU GLN ILE LEU ASN GLU ILE SEQRES 8 A 273 ASN ARG ILE LEU LYS PRO GLY GLY SER ALA PHE TYR ASN SEQRES 9 A 273 HIS LYS ASP ARG ARG PHE CYS LYS ARG ASP HIS PRO PRO SEQRES 10 A 273 GLU LYS PHE LEU SER ASP SER ASP LEU GLU LEU TYR GLN SEQRES 11 A 273 THR ILE ILE TRP ASP ARG GLY SER THR VAL ASN GLN ASN SEQRES 12 A 273 ALA ARG TYR PHE ARG PRO TYR VAL GLU LYS ILE PHE TRP SEQRES 13 A 273 PHE THR LYS SER ILE SER GLY GLU SER THR THR PRO LYS SEQRES 14 A 273 PHE HIS ARG ASP ARG LEU PRO GLU TYR PHE LYS GLY VAL SEQRES 15 A 273 ILE TRP ARG ILE PRO PRO ASP LYS ARG ASN LYS HIS PRO SEQRES 16 A 273 ALA PRO PHE PRO ALA ILE LEU ALA GLU ILE CYS ILE LEU SEQRES 17 A 273 THR THR THR GLU GLU GLY ASP LEU VAL LEU ASP PRO PHE SEQRES 18 A 273 ALA GLY SER GLY THR THR LEU VAL ALA ALA ALA SER LEU SEQRES 19 A 273 LYS ARG SER TYR LEU GLY PHE ASP ILE SER SER LYS TYR SEQRES 20 A 273 GLN LYS MET PHE HIS GLN ARG LEU ALA THR SER LYS SER SEQRES 21 A 273 LYS VAL HIS LEU TRP LEU GLU HIS HIS HIS HIS HIS HIS HET SFG A 401 27 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HETNAM SFG SINEFUNGIN HETNAM EDO 1,2-ETHANEDIOL HETSYN SFG ADENOSYL-ORNITHINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SFG C15 H23 N7 O5 FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 HOH *66(H2 O) HELIX 1 AA1 ASN A 68 THR A 81 1 14 HELIX 2 AA2 ASP A 88 SER A 95 1 8 HELIX 3 AA3 GLU A 136 ILE A 153 1 18 HELIX 4 AA4 PRO A 176 SER A 181 1 6 HELIX 5 AA5 HIS A 230 LEU A 234 5 5 HELIX 6 AA6 PRO A 235 LYS A 239 5 5 HELIX 7 AA7 PRO A 258 THR A 270 1 13 HELIX 8 AA8 GLY A 284 LEU A 293 1 10 HELIX 9 AA9 SER A 303 SER A 317 1 15 SHEET 1 AA1 8 LYS A 83 VAL A 86 0 SHEET 2 AA1 8 SER A 296 ASP A 301 1 O GLY A 299 N VAL A 85 SHEET 3 AA1 8 LEU A 275 ASP A 278 1 N VAL A 276 O SER A 296 SHEET 4 AA1 8 VAL A 101 THR A 106 1 N CYS A 103 O LEU A 277 SHEET 5 AA1 8 LEU A 154 HIS A 164 1 O PHE A 161 N VAL A 104 SHEET 6 AA1 8 VAL A 210 THR A 217 -1 O PHE A 216 N ALA A 160 SHEET 7 AA1 8 GLU A 186 ASP A 194 -1 N TYR A 188 O TRP A 215 SHEET 8 AA1 8 ILE A 242 ARG A 244 1 O TRP A 243 N ASP A 194 CRYST1 71.426 82.285 49.773 90.00 106.57 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014001 0.000000 0.004166 0.00000 SCALE2 0.000000 0.012153 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020962 0.00000