HEADER TRANSFERASE/INHIBITOR 29-MAR-23 8S9O TITLE DNA CYTOSINE-N4 METHYLTRANSFERASE (RESIDUES 61-324) FROM THE BDELLOID TITLE 2 ROTIFER ADINETA VAGA - P1 CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA CYTOSINE-N4 METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: METHYLTRANSFERASE DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ADINETA VAGA; SOURCE 3 ORGANISM_TAXID: 104782; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: CODONPLUS KEYWDS DNA CYTOSINE METHYLATION, PROTEIN-DNA COMPLEX, TRANSFERASE, DNA KEYWDS 2 BINDING PROTEIN, TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.ZHOU,J.R.HORTON,X.CHENG REVDAT 2 16-AUG-23 8S9O 1 JRNL REVDAT 1 02-AUG-23 8S9O 0 JRNL AUTH J.ZHOU,J.R.HORTON,G.KAUR,Q.CHEN,X.LI,F.MENDOZA,T.WU, JRNL AUTH 2 R.M.BLUMENTHAL,X.ZHANG,X.CHENG JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF THE JRNL TITL 2 FIRST-DISCOVERED METAZOAN DNA CYTOSINE-N4 METHYLTRANSFERASE JRNL TITL 3 FROM THE BDELLOID ROTIFER ADINETA VAGA. JRNL REF J.BIOL.CHEM. V. 299 05017 2023 JRNL REFN ESSN 1083-351X JRNL PMID 37414145 JRNL DOI 10.1016/J.JBC.2023.105017 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 37944 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.0200 - 4.6600 0.98 2617 138 0.1699 0.2065 REMARK 3 2 4.6600 - 3.7000 0.97 2581 149 0.1503 0.2099 REMARK 3 3 3.7000 - 3.2300 0.97 2572 150 0.1818 0.1887 REMARK 3 4 3.2300 - 2.9400 0.98 2600 140 0.1928 0.2555 REMARK 3 5 2.9400 - 2.7300 0.98 2611 136 0.2080 0.2742 REMARK 3 6 2.7300 - 2.5700 0.98 2611 137 0.2148 0.2604 REMARK 3 7 2.5700 - 2.4400 0.97 2588 140 0.2224 0.2672 REMARK 3 8 2.4400 - 2.3300 0.97 2581 138 0.2312 0.3137 REMARK 3 9 2.3300 - 2.2400 0.97 2583 134 0.2450 0.2704 REMARK 3 10 2.2400 - 2.1600 0.97 2580 133 0.2777 0.3127 REMARK 3 11 2.1600 - 2.1000 0.96 2599 137 0.2991 0.3062 REMARK 3 12 2.1000 - 2.0400 0.96 2548 132 0.3278 0.3814 REMARK 3 13 2.0400 - 1.9800 0.95 2526 122 0.3673 0.4146 REMARK 3 14 1.9800 - 1.9400 0.90 2430 131 0.3817 0.4133 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.967 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3782 REMARK 3 ANGLE : 0.588 5131 REMARK 3 CHIRALITY : 0.042 566 REMARK 3 PLANARITY : 0.004 674 REMARK 3 DIHEDRAL : 12.075 1387 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4105 -2.7299 -2.3096 REMARK 3 T TENSOR REMARK 3 T11: 0.2828 T22: 0.3142 REMARK 3 T33: 0.2197 T12: -0.0349 REMARK 3 T13: 0.0120 T23: -0.0322 REMARK 3 L TENSOR REMARK 3 L11: 3.2275 L22: 4.9242 REMARK 3 L33: 4.3161 L12: -0.4648 REMARK 3 L13: 0.0519 L23: 0.0719 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: 0.5696 S13: 0.1249 REMARK 3 S21: -0.4709 S22: 0.0980 S23: -0.2779 REMARK 3 S31: -0.2824 S32: 0.4867 S33: -0.0749 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 324 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2332 -10.0868 9.9438 REMARK 3 T TENSOR REMARK 3 T11: 0.2003 T22: 0.2576 REMARK 3 T33: 0.2813 T12: -0.0315 REMARK 3 T13: 0.0039 T23: -0.0920 REMARK 3 L TENSOR REMARK 3 L11: 3.5747 L22: 0.6829 REMARK 3 L33: 2.7988 L12: 0.1653 REMARK 3 L13: 1.1930 L23: 0.5884 REMARK 3 S TENSOR REMARK 3 S11: -0.0146 S12: 0.1484 S13: -0.2509 REMARK 3 S21: -0.0631 S22: 0.1170 S23: -0.1444 REMARK 3 S31: 0.0818 S32: 0.1765 S33: -0.0940 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 73 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.9419 20.9939 27.4825 REMARK 3 T TENSOR REMARK 3 T11: 0.5422 T22: 0.4801 REMARK 3 T33: 0.7000 T12: -0.1247 REMARK 3 T13: -0.0376 T23: -0.1957 REMARK 3 L TENSOR REMARK 3 L11: 0.6920 L22: 2.4603 REMARK 3 L33: 6.9697 L12: -1.2562 REMARK 3 L13: -0.5743 L23: 2.1197 REMARK 3 S TENSOR REMARK 3 S11: 0.0224 S12: -0.3530 S13: 1.0228 REMARK 3 S21: 0.1767 S22: 0.1774 S23: -0.8797 REMARK 3 S31: -1.2002 S32: 0.7686 S33: -0.1973 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 103 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3534 15.7401 25.6193 REMARK 3 T TENSOR REMARK 3 T11: 0.5182 T22: 0.4991 REMARK 3 T33: 0.6204 T12: 0.1044 REMARK 3 T13: -0.1204 T23: -0.2768 REMARK 3 L TENSOR REMARK 3 L11: 4.2425 L22: 5.8986 REMARK 3 L33: 7.1918 L12: -0.0181 REMARK 3 L13: 1.7347 L23: -3.7603 REMARK 3 S TENSOR REMARK 3 S11: -0.2889 S12: 0.1885 S13: -0.2130 REMARK 3 S21: 0.0438 S22: 0.0533 S23: 1.6189 REMARK 3 S31: -1.0684 S32: -1.1818 S33: 0.2374 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 136 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.3605 15.6481 18.5895 REMARK 3 T TENSOR REMARK 3 T11: 0.4377 T22: 0.3464 REMARK 3 T33: 0.3966 T12: 0.0546 REMARK 3 T13: -0.1456 T23: -0.0413 REMARK 3 L TENSOR REMARK 3 L11: 5.3339 L22: 6.6564 REMARK 3 L33: 6.1859 L12: -0.0462 REMARK 3 L13: -2.1373 L23: -0.9507 REMARK 3 S TENSOR REMARK 3 S11: -0.1863 S12: 0.2775 S13: 0.8223 REMARK 3 S21: -0.3137 S22: 0.2437 S23: 0.7541 REMARK 3 S31: -1.0863 S32: -0.6954 S33: -0.0515 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 176 THROUGH 325 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.8546 5.1097 28.4057 REMARK 3 T TENSOR REMARK 3 T11: 0.2022 T22: 0.3808 REMARK 3 T33: 0.3210 T12: 0.0215 REMARK 3 T13: -0.0406 T23: -0.1217 REMARK 3 L TENSOR REMARK 3 L11: 2.5808 L22: 2.1402 REMARK 3 L33: 1.1126 L12: 1.1004 REMARK 3 L13: 0.4153 L23: 0.8688 REMARK 3 S TENSOR REMARK 3 S11: 0.0085 S12: -0.3653 S13: 0.2605 REMARK 3 S21: 0.0684 S22: -0.0773 S23: 0.1321 REMARK 3 S31: -0.0839 S32: -0.1379 S33: 0.0592 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8S9O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-23. REMARK 100 THE DEPOSITION ID IS D_1000273266. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9201 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38198 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 51.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM THIOCYANATE, 20 % PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 60 REMARK 465 HIS A 61 REMARK 465 ARG A 62 REMARK 465 GLU A 63 REMARK 465 SER A 64 REMARK 465 SER A 65 REMARK 465 LEU A 66 REMARK 465 GLY A 114 REMARK 465 LEU A 115 REMARK 465 ARG A 116 REMARK 465 GLU A 117 REMARK 465 GLY A 118 REMARK 465 ARG A 119 REMARK 465 PRO A 120 REMARK 465 TYR A 121 REMARK 465 LEU A 122 REMARK 465 GLY A 123 REMARK 465 GLN A 124 REMARK 465 ILE A 125 REMARK 465 ILE A 126 REMARK 465 TYR A 127 REMARK 465 ASP A 128 REMARK 465 THR A 129 REMARK 465 TYR A 130 REMARK 465 ASP A 131 REMARK 465 ASP A 132 REMARK 465 ASN A 133 REMARK 465 MET A 134 REMARK 465 ARG A 167 REMARK 465 ARG A 168 REMARK 465 PHE A 169 REMARK 465 CYS A 170 REMARK 465 LYS A 171 REMARK 465 ARG A 172 REMARK 465 ASP A 173 REMARK 465 LEU A 325 REMARK 465 GLU A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 465 MET B 60 REMARK 465 HIS B 61 REMARK 465 ARG B 62 REMARK 465 GLU B 63 REMARK 465 SER B 64 REMARK 465 SER B 65 REMARK 465 LEU B 66 REMARK 465 SER B 67 REMARK 465 ASN B 68 REMARK 465 SER B 69 REMARK 465 ASP B 70 REMARK 465 SER B 71 REMARK 465 PHE B 72 REMARK 465 LEU B 113 REMARK 465 GLY B 114 REMARK 465 LEU B 115 REMARK 465 ARG B 116 REMARK 465 GLU B 117 REMARK 465 GLY B 118 REMARK 465 ARG B 119 REMARK 465 PRO B 120 REMARK 465 TYR B 121 REMARK 465 LEU B 122 REMARK 465 GLY B 123 REMARK 465 GLN B 124 REMARK 465 ILE B 125 REMARK 465 ILE B 126 REMARK 465 TYR B 127 REMARK 465 ASP B 128 REMARK 465 THR B 129 REMARK 465 TYR B 130 REMARK 465 ASP B 131 REMARK 465 ASP B 132 REMARK 465 ASN B 133 REMARK 465 ASP B 166 REMARK 465 ARG B 167 REMARK 465 ARG B 168 REMARK 465 PHE B 169 REMARK 465 CYS B 170 REMARK 465 LYS B 171 REMARK 465 ARG B 172 REMARK 465 ASP B 173 REMARK 465 HIS B 174 REMARK 465 GLU B 326 REMARK 465 HIS B 327 REMARK 465 HIS B 328 REMARK 465 HIS B 329 REMARK 465 HIS B 330 REMARK 465 HIS B 331 REMARK 465 HIS B 332 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 ASN A 135 CG OD1 ND2 REMARK 470 GLU A 136 CG CD OE1 OE2 REMARK 470 ASP A 166 CG OD1 OD2 REMARK 470 HIS A 174 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 GLU A 223 CG CD OE1 OE2 REMARK 470 ARG A 244 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 ARG A 250 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 318 CG CD CE NZ REMARK 470 LYS A 320 CG CD CE NZ REMARK 470 TRP A 324 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 324 CZ3 CH2 REMARK 470 GLN B 73 CG CD OE1 NE2 REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 LYS B 75 CG CD CE NZ REMARK 470 LYS B 76 CG CD CE NZ REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 ASN B 135 CG OD1 ND2 REMARK 470 GLU B 136 CG CD OE1 OE2 REMARK 470 LYS B 178 CG CD CE NZ REMARK 470 SER B 221 OG REMARK 470 GLU B 223 CG CD OE1 OE2 REMARK 470 LYS B 249 CG CD CE NZ REMARK 470 ARG B 250 CG CD NE CZ NH1 NH2 REMARK 470 SER B 317 OG REMARK 470 LYS B 318 CG CD CE NZ REMARK 470 LEU B 325 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 87 147.59 -172.93 REMARK 500 ALA A 255 71.07 -153.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 594 DISTANCE = 6.67 ANGSTROMS DBREF 8S9O A 60 332 PDB 8S9O 8S9O 60 332 DBREF 8S9O B 60 332 PDB 8S9O 8S9O 60 332 SEQRES 1 A 273 MET HIS ARG GLU SER SER LEU SER ASN SER ASP SER PHE SEQRES 2 A 273 GLN LYS LYS LYS LEU LYS SER PHE THR ASN LYS TYR VAL SEQRES 3 A 273 VAL LEU ASP SER LEU GLU GLY LEU ARG SER LEU PRO ASP SEQRES 4 A 273 ASN SER VAL GLN CYS VAL VAL THR SER PRO PRO TYR ASN SEQRES 5 A 273 LYS LEU GLY LEU ARG GLU GLY ARG PRO TYR LEU GLY GLN SEQRES 6 A 273 ILE ILE TYR ASP THR TYR ASP ASP ASN MET ASN GLU ASP SEQRES 7 A 273 ASP TYR GLN LYS TRP GLN LEU GLN ILE LEU ASN GLU ILE SEQRES 8 A 273 ASN ARG ILE LEU LYS PRO GLY GLY SER ALA PHE TYR ASN SEQRES 9 A 273 HIS LYS ASP ARG ARG PHE CYS LYS ARG ASP HIS PRO PRO SEQRES 10 A 273 GLU LYS PHE LEU SER ASP SER ASP LEU GLU LEU TYR GLN SEQRES 11 A 273 THR ILE ILE TRP ASP ARG GLY SER THR VAL ASN GLN ASN SEQRES 12 A 273 ALA ARG TYR PHE ARG PRO TYR VAL GLU LYS ILE PHE TRP SEQRES 13 A 273 PHE THR LYS SER ILE SER GLY GLU SER THR THR PRO LYS SEQRES 14 A 273 PHE HIS ARG ASP ARG LEU PRO GLU TYR PHE LYS GLY VAL SEQRES 15 A 273 ILE TRP ARG ILE PRO PRO ASP LYS ARG ASN LYS HIS PRO SEQRES 16 A 273 ALA PRO PHE PRO ALA ILE LEU ALA GLU ILE CYS ILE LEU SEQRES 17 A 273 THR THR THR GLU GLU GLY ASP LEU VAL LEU ASP PRO PHE SEQRES 18 A 273 ALA GLY SER GLY THR THR LEU VAL ALA ALA ALA SER LEU SEQRES 19 A 273 LYS ARG SER TYR LEU GLY PHE ASP ILE SER SER LYS TYR SEQRES 20 A 273 GLN LYS MET PHE HIS GLN ARG LEU ALA THR SER LYS SER SEQRES 21 A 273 LYS VAL HIS LEU TRP LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 273 MET HIS ARG GLU SER SER LEU SER ASN SER ASP SER PHE SEQRES 2 B 273 GLN LYS LYS LYS LEU LYS SER PHE THR ASN LYS TYR VAL SEQRES 3 B 273 VAL LEU ASP SER LEU GLU GLY LEU ARG SER LEU PRO ASP SEQRES 4 B 273 ASN SER VAL GLN CYS VAL VAL THR SER PRO PRO TYR ASN SEQRES 5 B 273 LYS LEU GLY LEU ARG GLU GLY ARG PRO TYR LEU GLY GLN SEQRES 6 B 273 ILE ILE TYR ASP THR TYR ASP ASP ASN MET ASN GLU ASP SEQRES 7 B 273 ASP TYR GLN LYS TRP GLN LEU GLN ILE LEU ASN GLU ILE SEQRES 8 B 273 ASN ARG ILE LEU LYS PRO GLY GLY SER ALA PHE TYR ASN SEQRES 9 B 273 HIS LYS ASP ARG ARG PHE CYS LYS ARG ASP HIS PRO PRO SEQRES 10 B 273 GLU LYS PHE LEU SER ASP SER ASP LEU GLU LEU TYR GLN SEQRES 11 B 273 THR ILE ILE TRP ASP ARG GLY SER THR VAL ASN GLN ASN SEQRES 12 B 273 ALA ARG TYR PHE ARG PRO TYR VAL GLU LYS ILE PHE TRP SEQRES 13 B 273 PHE THR LYS SER ILE SER GLY GLU SER THR THR PRO LYS SEQRES 14 B 273 PHE HIS ARG ASP ARG LEU PRO GLU TYR PHE LYS GLY VAL SEQRES 15 B 273 ILE TRP ARG ILE PRO PRO ASP LYS ARG ASN LYS HIS PRO SEQRES 16 B 273 ALA PRO PHE PRO ALA ILE LEU ALA GLU ILE CYS ILE LEU SEQRES 17 B 273 THR THR THR GLU GLU GLY ASP LEU VAL LEU ASP PRO PHE SEQRES 18 B 273 ALA GLY SER GLY THR THR LEU VAL ALA ALA ALA SER LEU SEQRES 19 B 273 LYS ARG SER TYR LEU GLY PHE ASP ILE SER SER LYS TYR SEQRES 20 B 273 GLN LYS MET PHE HIS GLN ARG LEU ALA THR SER LYS SER SEQRES 21 B 273 LYS VAL HIS LEU TRP LEU GLU HIS HIS HIS HIS HIS HIS HET SFG A 401 27 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET SFG B 401 27 HET EDO B 402 4 HET EDO B 403 4 HET EDO B 404 4 HET EDO B 405 4 HET EDO B 406 4 HETNAM SFG SINEFUNGIN HETNAM EDO 1,2-ETHANEDIOL HETSYN SFG ADENOSYL-ORNITHINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SFG 2(C15 H23 N7 O5) FORMUL 4 EDO 12(C2 H6 O2) FORMUL 17 HOH *177(H2 O) HELIX 1 AA1 SER A 67 THR A 81 1 15 HELIX 2 AA2 ASP A 88 SER A 95 1 8 HELIX 3 AA3 GLU A 136 ILE A 153 1 18 HELIX 4 AA4 PRO A 176 SER A 181 1 6 HELIX 5 AA5 HIS A 230 LEU A 234 5 5 HELIX 6 AA6 PRO A 235 LYS A 239 5 5 HELIX 7 AA7 PRO A 258 THR A 270 1 13 HELIX 8 AA8 GLY A 284 LEU A 293 1 10 HELIX 9 AA9 SER A 303 SER A 317 1 15 HELIX 10 AB1 LYS B 74 SER B 79 1 6 HELIX 11 AB2 ASP B 88 LEU B 96 1 9 HELIX 12 AB3 ASN B 135 ILE B 153 1 19 HELIX 13 AB4 PRO B 176 SER B 181 1 6 HELIX 14 AB5 HIS B 230 LEU B 234 5 5 HELIX 15 AB6 PRO B 235 LYS B 239 5 5 HELIX 16 AB7 PRO B 258 THR B 270 1 13 HELIX 17 AB8 GLY B 284 LEU B 293 1 10 HELIX 18 AB9 SER B 303 SER B 317 1 15 SHEET 1 AA1 8 LYS A 83 VAL A 86 0 SHEET 2 AA1 8 SER A 296 ASP A 301 1 O GLY A 299 N VAL A 85 SHEET 3 AA1 8 LEU A 275 ASP A 278 1 N VAL A 276 O SER A 296 SHEET 4 AA1 8 VAL A 101 THR A 106 1 N CYS A 103 O LEU A 277 SHEET 5 AA1 8 LEU A 154 HIS A 164 1 O PHE A 161 N VAL A 104 SHEET 6 AA1 8 VAL A 210 THR A 217 -1 O PHE A 216 N ALA A 160 SHEET 7 AA1 8 GLU A 186 ASP A 194 -1 N TYR A 188 O TRP A 215 SHEET 8 AA1 8 ILE A 242 ARG A 244 1 O TRP A 243 N ASP A 194 SHEET 1 AA2 2 SER A 219 ILE A 220 0 SHEET 2 AA2 2 GLU A 223 SER A 224 -1 O GLU A 223 N ILE A 220 SHEET 1 AA3 8 LYS B 83 VAL B 86 0 SHEET 2 AA3 8 SER B 296 ASP B 301 1 O GLY B 299 N VAL B 85 SHEET 3 AA3 8 LEU B 275 ASP B 278 1 N ASP B 278 O LEU B 298 SHEET 4 AA3 8 VAL B 101 THR B 106 1 N CYS B 103 O LEU B 277 SHEET 5 AA3 8 LEU B 154 HIS B 164 1 O PHE B 161 N VAL B 104 SHEET 6 AA3 8 VAL B 210 THR B 217 -1 O PHE B 216 N ALA B 160 SHEET 7 AA3 8 GLU B 186 ASP B 194 -1 N TRP B 193 O GLU B 211 SHEET 8 AA3 8 ILE B 242 ARG B 244 1 O TRP B 243 N ASP B 194 SHEET 1 AA4 2 SER B 219 ILE B 220 0 SHEET 2 AA4 2 GLU B 223 SER B 224 -1 O GLU B 223 N ILE B 220 CRYST1 49.646 53.301 54.376 97.04 104.34 98.20 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020143 0.002903 0.005705 0.00000 SCALE2 0.000000 0.018955 0.003164 0.00000 SCALE3 0.000000 0.000000 0.019245 0.00000