HEADER LYASE 31-MAR-23 8SAE TITLE CRYSTAL STRUCTURE OF CYSTATHIONINE BETA LYASE FROM KLEBSIELLA TITLE 2 AEROGENES, PLP AND HEPES BOUND (C2 FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTATHIONINE BETA-LYASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.4.1.8; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: COVALENT LINKAGE BETWEEN LYS 210 NZ ATOM AND PLP C4A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA AEROGENES KCTC 2190; SOURCE 3 ORGANISM_TAXID: 1028307; SOURCE 4 GENE: EAE_03480; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: KLAEA.00906.A.1 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 1 12-APR-23 8SAE 0 JRNL AUTH L.LIU,S.LOVELL,K.P.BATTAILE,A.COOPER JRNL TITL CRYSTAL STRUCTURE OF CYSTATHIONINE BETA LYASE FROM JRNL TITL 2 KLEBSIELLA AEROGENES, PLP AND HEPES BOUND (C2 FORM) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21RC1_4906: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 139987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 6851 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 79.8100 - 4.6600 0.99 4554 234 0.1502 0.1590 REMARK 3 2 4.6600 - 3.7000 1.00 4531 249 0.1156 0.1318 REMARK 3 3 3.7000 - 3.2300 1.00 4507 246 0.1274 0.1473 REMARK 3 4 3.2300 - 2.9400 1.00 4520 221 0.1384 0.1521 REMARK 3 5 2.9400 - 2.7300 1.00 4498 230 0.1408 0.1612 REMARK 3 6 2.7300 - 2.5600 0.99 4493 216 0.1412 0.1703 REMARK 3 7 2.5600 - 2.4400 0.99 4512 225 0.1442 0.1555 REMARK 3 8 2.4400 - 2.3300 0.99 4495 238 0.1494 0.1693 REMARK 3 9 2.3300 - 2.2400 0.99 4428 250 0.1572 0.1892 REMARK 3 10 2.2400 - 2.1600 0.99 4472 224 0.1599 0.1759 REMARK 3 11 2.1600 - 2.1000 0.99 4460 238 0.1687 0.1934 REMARK 3 12 2.1000 - 2.0400 0.99 4460 221 0.1684 0.1962 REMARK 3 13 2.0400 - 1.9800 0.99 4438 235 0.1710 0.1975 REMARK 3 14 1.9800 - 1.9300 0.99 4454 223 0.1884 0.2017 REMARK 3 15 1.9300 - 1.8900 0.98 4399 232 0.1902 0.2102 REMARK 3 16 1.8900 - 1.8500 0.98 4450 237 0.1924 0.2192 REMARK 3 17 1.8500 - 1.8100 0.98 4387 251 0.2000 0.2377 REMARK 3 18 1.8100 - 1.7800 0.98 4387 241 0.2042 0.2614 REMARK 3 19 1.7800 - 1.7500 0.98 4423 215 0.2189 0.2452 REMARK 3 20 1.7500 - 1.7200 0.98 4415 238 0.2255 0.2615 REMARK 3 21 1.7200 - 1.6900 0.98 4437 211 0.2403 0.2880 REMARK 3 22 1.6900 - 1.6600 0.98 4404 203 0.2347 0.2533 REMARK 3 23 1.6600 - 1.6400 0.98 4376 209 0.2488 0.2777 REMARK 3 24 1.6400 - 1.6200 0.98 4402 228 0.2611 0.2986 REMARK 3 25 1.6200 - 1.5900 0.97 4416 214 0.2633 0.2791 REMARK 3 26 1.5900 - 1.5700 0.97 4346 233 0.2698 0.2817 REMARK 3 27 1.5700 - 1.5500 0.97 4376 229 0.2697 0.2858 REMARK 3 28 1.5500 - 1.5300 0.97 4376 214 0.2802 0.2891 REMARK 3 29 1.5300 - 1.5200 0.97 4404 220 0.2871 0.3081 REMARK 3 30 1.5200 - 1.5000 0.97 4316 226 0.3051 0.3252 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6529 REMARK 3 ANGLE : 0.944 8908 REMARK 3 CHIRALITY : 0.050 985 REMARK 3 PLANARITY : 0.010 1159 REMARK 3 DIHEDRAL : 13.164 2343 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9441 -16.2287 3.2008 REMARK 3 T TENSOR REMARK 3 T11: 0.1615 T22: 0.2744 REMARK 3 T33: 0.1918 T12: -0.0976 REMARK 3 T13: 0.0015 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 2.7549 L22: 2.3825 REMARK 3 L33: 3.8152 L12: -0.5250 REMARK 3 L13: -2.2025 L23: -0.5502 REMARK 3 S TENSOR REMARK 3 S11: 0.0451 S12: -0.0684 S13: -0.1277 REMARK 3 S21: 0.0180 S22: -0.0424 S23: 0.3598 REMARK 3 S31: 0.2251 S32: -0.5076 S33: 0.0576 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0872 -5.4301 -8.4116 REMARK 3 T TENSOR REMARK 3 T11: 0.1126 T22: 0.2224 REMARK 3 T33: 0.1635 T12: -0.0028 REMARK 3 T13: 0.0274 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.2900 L22: 1.2459 REMARK 3 L33: 4.1402 L12: -0.0662 REMARK 3 L13: -0.3250 L23: 0.9388 REMARK 3 S TENSOR REMARK 3 S11: 0.0465 S12: 0.0257 S13: 0.0585 REMARK 3 S21: -0.0548 S22: -0.0560 S23: 0.1060 REMARK 3 S31: -0.0581 S32: -0.4546 S33: 0.0029 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.4200 11.2143 14.2988 REMARK 3 T TENSOR REMARK 3 T11: 0.1539 T22: 0.2012 REMARK 3 T33: 0.1409 T12: 0.0205 REMARK 3 T13: 0.0294 T23: -0.0418 REMARK 3 L TENSOR REMARK 3 L11: 0.9735 L22: 1.1943 REMARK 3 L33: 1.5314 L12: -0.1748 REMARK 3 L13: -0.1031 L23: 0.0468 REMARK 3 S TENSOR REMARK 3 S11: -0.0443 S12: -0.1745 S13: 0.1341 REMARK 3 S21: 0.0711 S22: -0.0022 S23: 0.0182 REMARK 3 S31: -0.2268 S32: -0.1333 S33: 0.0355 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.4385 -0.7856 4.2372 REMARK 3 T TENSOR REMARK 3 T11: 0.1174 T22: 0.1991 REMARK 3 T33: 0.1477 T12: -0.0129 REMARK 3 T13: 0.0381 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.4756 L22: 1.4202 REMARK 3 L33: 1.2294 L12: -0.3425 REMARK 3 L13: 0.2341 L23: -0.3044 REMARK 3 S TENSOR REMARK 3 S11: 0.0141 S12: -0.0309 S13: 0.0126 REMARK 3 S21: -0.0080 S22: -0.0390 S23: 0.0382 REMARK 3 S31: -0.0483 S32: -0.1078 S33: 0.0186 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.8500 -6.4590 26.8816 REMARK 3 T TENSOR REMARK 3 T11: 0.1890 T22: 0.3504 REMARK 3 T33: 0.1576 T12: -0.0495 REMARK 3 T13: 0.0518 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.2959 L22: 0.1596 REMARK 3 L33: 1.1591 L12: -0.1481 REMARK 3 L13: -0.0537 L23: 0.1845 REMARK 3 S TENSOR REMARK 3 S11: 0.0127 S12: -0.2484 S13: -0.0359 REMARK 3 S21: 0.0832 S22: 0.0072 S23: 0.0428 REMARK 3 S31: 0.0833 S32: -0.2218 S33: 0.0035 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 310 THROUGH 395 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.8901 -3.9291 30.1390 REMARK 3 T TENSOR REMARK 3 T11: 0.1898 T22: 0.3028 REMARK 3 T33: 0.1577 T12: -0.0344 REMARK 3 T13: 0.0362 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.9939 L22: 1.4304 REMARK 3 L33: 0.9601 L12: -0.5294 REMARK 3 L13: 0.5660 L23: -0.0063 REMARK 3 S TENSOR REMARK 3 S11: -0.0628 S12: -0.1843 S13: 0.0615 REMARK 3 S21: 0.1209 S22: 0.0201 S23: -0.1379 REMARK 3 S31: -0.0043 S32: 0.0119 S33: 0.0413 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.6676 -21.8256 16.4103 REMARK 3 T TENSOR REMARK 3 T11: 0.2246 T22: 0.1475 REMARK 3 T33: 0.1783 T12: -0.0144 REMARK 3 T13: -0.0197 T23: 0.0325 REMARK 3 L TENSOR REMARK 3 L11: 3.4476 L22: 2.3330 REMARK 3 L33: 7.4302 L12: -0.3864 REMARK 3 L13: -2.0556 L23: -1.4557 REMARK 3 S TENSOR REMARK 3 S11: 0.0335 S12: -0.3251 S13: -0.2494 REMARK 3 S21: 0.2541 S22: -0.1532 S23: -0.1355 REMARK 3 S31: 0.3971 S32: 0.2805 S33: 0.1635 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.3777 -43.3826 12.5218 REMARK 3 T TENSOR REMARK 3 T11: 0.7777 T22: 0.0852 REMARK 3 T33: 0.3716 T12: -0.1280 REMARK 3 T13: -0.1838 T23: 0.1555 REMARK 3 L TENSOR REMARK 3 L11: 0.2571 L22: 0.2981 REMARK 3 L33: 0.6204 L12: 0.0488 REMARK 3 L13: 0.2102 L23: -0.0100 REMARK 3 S TENSOR REMARK 3 S11: 0.3263 S12: -0.1577 S13: -0.4954 REMARK 3 S21: 0.0874 S22: -0.0121 S23: -0.0117 REMARK 3 S31: 0.9184 S32: 0.0182 S33: 0.3063 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 246 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2175 -25.6887 18.9902 REMARK 3 T TENSOR REMARK 3 T11: 0.3060 T22: 0.4120 REMARK 3 T33: 0.1962 T12: -0.1694 REMARK 3 T13: 0.0055 T23: 0.0584 REMARK 3 L TENSOR REMARK 3 L11: 2.2053 L22: 1.7736 REMARK 3 L33: 0.4433 L12: 1.1791 REMARK 3 L13: -0.9417 L23: -0.6929 REMARK 3 S TENSOR REMARK 3 S11: 0.2645 S12: -0.2270 S13: -0.0215 REMARK 3 S21: 0.2430 S22: -0.1026 S23: 0.1806 REMARK 3 S31: 0.1868 S32: -0.4109 S33: 0.0169 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 280 THROUGH 395 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8503 -35.3935 15.2294 REMARK 3 T TENSOR REMARK 3 T11: 0.4773 T22: 0.5343 REMARK 3 T33: 0.3631 T12: -0.6504 REMARK 3 T13: 0.0182 T23: 0.1897 REMARK 3 L TENSOR REMARK 3 L11: 0.2186 L22: 0.2684 REMARK 3 L33: 0.0166 L12: 0.2398 REMARK 3 L13: -0.0406 L23: -0.0380 REMARK 3 S TENSOR REMARK 3 S11: 0.1225 S12: -0.2189 S13: -0.3313 REMARK 3 S21: 0.0700 S22: 0.0134 S23: 0.1748 REMARK 3 S31: 0.3498 S32: -0.3239 S33: 0.0956 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SAE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-23. REMARK 100 THE DEPOSITION ID IS D_1000273366. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 140067 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 79.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 1.44700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BERKELEY F8: 55% MPD, 100 MM HEPES, PH REMARK 280 7.5. KLAEA.00906.A.B1.PW39169 AT 41.1 MG/ML. PLATE: 13119, WELL REMARK 280 F8 DROP 3, PUCK: PSL-0911, CRYO: DIRECT, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.53200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.45100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.53200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 65.45100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 28440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -225.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 87.06400 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 653 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 813 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 607 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 3 CG OD1 OD2 REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 ASP B 3 CG OD1 OD2 REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 GLU B 363 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 32 -69.17 -98.61 REMARK 500 PHE A 55 -58.03 -138.06 REMARK 500 ILE A 159 -56.35 69.53 REMARK 500 THR A 209 -36.72 -39.52 REMARK 500 LYS A 210 -109.40 -85.33 REMARK 500 ASP A 217 -65.23 -103.52 REMARK 500 ILE A 220 143.79 -172.08 REMARK 500 SER A 308 -157.12 -96.55 REMARK 500 SER A 339 -175.18 67.84 REMARK 500 TRP A 340 -177.69 177.82 REMARK 500 SER B 32 -69.41 -103.21 REMARK 500 PHE B 55 -55.72 -139.26 REMARK 500 ILE B 159 -52.78 68.78 REMARK 500 THR B 209 -36.03 -39.46 REMARK 500 LYS B 210 -106.94 -84.97 REMARK 500 ASP B 217 -67.40 -102.89 REMARK 500 ILE B 220 143.26 -172.53 REMARK 500 SER B 308 -158.98 -99.86 REMARK 500 SER B 339 -178.63 69.57 REMARK 500 TRP B 340 -176.67 -178.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 855 DISTANCE = 6.03 ANGSTROMS DBREF1 8SAE A 1 395 UNP A0A0H3FMF8_KLEAK DBREF2 8SAE A A0A0H3FMF8 1 395 DBREF1 8SAE B 1 395 UNP A0A0H3FMF8_KLEAK DBREF2 8SAE B A0A0H3FMF8 1 395 SEQADV 8SAE MET A -7 UNP A0A0H3FMF INITIATING METHIONINE SEQADV 8SAE ALA A -6 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8SAE HIS A -5 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8SAE HIS A -4 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8SAE HIS A -3 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8SAE HIS A -2 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8SAE HIS A -1 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8SAE HIS A 0 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8SAE ILE A 244 UNP A0A0H3FMF VAL 244 ENGINEERED MUTATION SEQADV 8SAE PRO A 360 UNP A0A0H3FMF LEU 360 ENGINEERED MUTATION SEQADV 8SAE MET B -7 UNP A0A0H3FMF INITIATING METHIONINE SEQADV 8SAE ALA B -6 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8SAE HIS B -5 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8SAE HIS B -4 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8SAE HIS B -3 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8SAE HIS B -2 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8SAE HIS B -1 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8SAE HIS B 0 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8SAE ILE B 244 UNP A0A0H3FMF VAL 244 ENGINEERED MUTATION SEQADV 8SAE PRO B 360 UNP A0A0H3FMF LEU 360 ENGINEERED MUTATION SEQRES 1 A 403 MET ALA HIS HIS HIS HIS HIS HIS MET ALA ASP LYS HIS SEQRES 2 A 403 LEU ASP THR ALA LEU VAL ASN ALA GLY ARG ARG LYS LYS SEQRES 3 A 403 TYR THR GLN GLY SER VAL ASN SER VAL ILE GLN ARG ALA SEQRES 4 A 403 SER SER LEU VAL PHE ASP THR VAL GLU ALA LYS LYS HIS SEQRES 5 A 403 ALA THR ARG ASN ARG ALA LYS GLY GLU LEU PHE TYR GLY SEQRES 6 A 403 ARG ARG GLY THR LEU THR HIS PHE SER LEU GLN GLU ALA SEQRES 7 A 403 MET CYS GLU LEU GLU GLY GLY ALA GLY CYS ALA LEU PHE SEQRES 8 A 403 PRO CYS GLY ALA ALA ALA VAL ALA ASN THR ILE LEU ALA SEQRES 9 A 403 PHE VAL GLU GLN GLY ASP HIS VAL LEU MET THR ASN THR SEQRES 10 A 403 ALA TYR GLU PRO SER GLN ASP PHE CYS THR LYS ILE LEU SEQRES 11 A 403 ALA LYS LEU GLY VAL THR THR GLY TRP PHE ASP PRO LEU SEQRES 12 A 403 ILE GLY ALA ASP ILE ALA ASN LEU ILE GLN PRO ASN THR SEQRES 13 A 403 LYS VAL VAL PHE LEU GLU SER PRO GLY SER ILE THR MET SEQRES 14 A 403 GLU VAL HIS ASP VAL PRO ALA ILE VAL ALA ALA VAL ARG SEQRES 15 A 403 ARG VAL ALA PRO GLU ALA ILE ILE MET ILE ASP ASN THR SEQRES 16 A 403 TRP ALA ALA GLY VAL LEU PHE LYS ALA LEU ASP PHE GLY SEQRES 17 A 403 ILE ASP ILE SER ILE GLN ALA ALA THR LYS TYR LEU ILE SEQRES 18 A 403 GLY HIS SER ASP GLY MET ILE GLY THR ALA VAL ALA ASN SEQRES 19 A 403 ALA ARG CYS TRP GLU GLN LEU CYS GLU ASN ALA TYR LEU SEQRES 20 A 403 MET GLY GLN MET ILE ASP ALA ASP THR ALA TYR MET THR SEQRES 21 A 403 SER ARG GLY LEU ARG THR LEU GLY VAL ARG LEU ARG GLN SEQRES 22 A 403 HIS HIS GLU SER SER LEU ARG VAL ALA GLU TRP LEU ALA SEQRES 23 A 403 GLN HIS PRO GLN VAL ALA ARG VAL ASN HIS PRO ALA LEU SEQRES 24 A 403 PRO GLY SER LYS GLY HIS GLU PHE TRP LYS ARG ASP PHE SEQRES 25 A 403 SER GLY SER SER GLY LEU PHE SER PHE VAL LEU ASN LYS SEQRES 26 A 403 ARG LEU THR ASP ALA GLU LEU ALA ALA TYR LEU ASP ASN SEQRES 27 A 403 PHE SER LEU PHE SER MET ALA TYR SER TRP GLY GLY PHE SEQRES 28 A 403 GLU SER LEU ILE LEU ALA ASN GLN PRO GLU HIS ILE ALA SEQRES 29 A 403 ALA ILE ARG PRO GLU ALA GLU VAL ASP PHE SER GLY THR SEQRES 30 A 403 LEU ILE ARG LEU HIS ILE GLY LEU GLU ASN VAL ASP ASP SEQRES 31 A 403 LEU LEU ALA ASP LEU ALA ALA GLY PHE ALA ARG ILE VAL SEQRES 1 B 403 MET ALA HIS HIS HIS HIS HIS HIS MET ALA ASP LYS HIS SEQRES 2 B 403 LEU ASP THR ALA LEU VAL ASN ALA GLY ARG ARG LYS LYS SEQRES 3 B 403 TYR THR GLN GLY SER VAL ASN SER VAL ILE GLN ARG ALA SEQRES 4 B 403 SER SER LEU VAL PHE ASP THR VAL GLU ALA LYS LYS HIS SEQRES 5 B 403 ALA THR ARG ASN ARG ALA LYS GLY GLU LEU PHE TYR GLY SEQRES 6 B 403 ARG ARG GLY THR LEU THR HIS PHE SER LEU GLN GLU ALA SEQRES 7 B 403 MET CYS GLU LEU GLU GLY GLY ALA GLY CYS ALA LEU PHE SEQRES 8 B 403 PRO CYS GLY ALA ALA ALA VAL ALA ASN THR ILE LEU ALA SEQRES 9 B 403 PHE VAL GLU GLN GLY ASP HIS VAL LEU MET THR ASN THR SEQRES 10 B 403 ALA TYR GLU PRO SER GLN ASP PHE CYS THR LYS ILE LEU SEQRES 11 B 403 ALA LYS LEU GLY VAL THR THR GLY TRP PHE ASP PRO LEU SEQRES 12 B 403 ILE GLY ALA ASP ILE ALA ASN LEU ILE GLN PRO ASN THR SEQRES 13 B 403 LYS VAL VAL PHE LEU GLU SER PRO GLY SER ILE THR MET SEQRES 14 B 403 GLU VAL HIS ASP VAL PRO ALA ILE VAL ALA ALA VAL ARG SEQRES 15 B 403 ARG VAL ALA PRO GLU ALA ILE ILE MET ILE ASP ASN THR SEQRES 16 B 403 TRP ALA ALA GLY VAL LEU PHE LYS ALA LEU ASP PHE GLY SEQRES 17 B 403 ILE ASP ILE SER ILE GLN ALA ALA THR LYS TYR LEU ILE SEQRES 18 B 403 GLY HIS SER ASP GLY MET ILE GLY THR ALA VAL ALA ASN SEQRES 19 B 403 ALA ARG CYS TRP GLU GLN LEU CYS GLU ASN ALA TYR LEU SEQRES 20 B 403 MET GLY GLN MET ILE ASP ALA ASP THR ALA TYR MET THR SEQRES 21 B 403 SER ARG GLY LEU ARG THR LEU GLY VAL ARG LEU ARG GLN SEQRES 22 B 403 HIS HIS GLU SER SER LEU ARG VAL ALA GLU TRP LEU ALA SEQRES 23 B 403 GLN HIS PRO GLN VAL ALA ARG VAL ASN HIS PRO ALA LEU SEQRES 24 B 403 PRO GLY SER LYS GLY HIS GLU PHE TRP LYS ARG ASP PHE SEQRES 25 B 403 SER GLY SER SER GLY LEU PHE SER PHE VAL LEU ASN LYS SEQRES 26 B 403 ARG LEU THR ASP ALA GLU LEU ALA ALA TYR LEU ASP ASN SEQRES 27 B 403 PHE SER LEU PHE SER MET ALA TYR SER TRP GLY GLY PHE SEQRES 28 B 403 GLU SER LEU ILE LEU ALA ASN GLN PRO GLU HIS ILE ALA SEQRES 29 B 403 ALA ILE ARG PRO GLU ALA GLU VAL ASP PHE SER GLY THR SEQRES 30 B 403 LEU ILE ARG LEU HIS ILE GLY LEU GLU ASN VAL ASP ASP SEQRES 31 B 403 LEU LEU ALA ASP LEU ALA ALA GLY PHE ALA ARG ILE VAL HET PO4 A 401 5 HET PO4 A 402 5 HET PO4 A 403 5 HET PLP A 404 15 HET EPE A 405 15 HET MPD A 406 8 HET MPD A 407 8 HET MPD A 408 8 HET PO4 B 401 5 HET PLP B 402 15 HET EPE B 403 15 HET MPD B 404 8 HET MPD B 405 8 HETNAM PO4 PHOSPHATE ION HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN EPE HEPES FORMUL 3 PO4 4(O4 P 3-) FORMUL 6 PLP 2(C8 H10 N O6 P) FORMUL 7 EPE 2(C8 H18 N2 O4 S) FORMUL 8 MPD 5(C6 H14 O2) FORMUL 16 HOH *551(H2 O) HELIX 1 AA1 HIS A 5 ALA A 13 1 9 HELIX 2 AA2 ARG A 16 GLN A 21 1 6 HELIX 3 AA3 THR A 38 ASN A 48 1 11 HELIX 4 AA4 THR A 61 GLY A 76 1 16 HELIX 5 AA5 CYS A 85 PHE A 97 1 13 HELIX 6 AA6 TYR A 111 ILE A 121 1 11 HELIX 7 AA7 LEU A 122 GLY A 126 5 5 HELIX 8 AA8 ILE A 136 ILE A 144 5 9 HELIX 9 AA9 ASP A 165 ALA A 177 1 13 HELIX 10 AB1 LYS A 195 GLY A 200 5 6 HELIX 11 AB2 CYS A 229 MET A 240 1 12 HELIX 12 AB3 ASP A 245 ARG A 257 1 13 HELIX 13 AB4 THR A 258 HIS A 280 1 23 HELIX 14 AB5 GLY A 296 PHE A 304 1 9 HELIX 15 AB6 THR A 320 ASP A 329 1 10 HELIX 16 AB7 GLN A 351 ALA A 357 1 7 HELIX 17 AB8 ASN A 379 VAL A 395 1 17 HELIX 18 AB9 HIS B 5 ALA B 13 1 9 HELIX 19 AC1 ARG B 16 GLN B 21 1 6 HELIX 20 AC2 THR B 38 ASN B 48 1 11 HELIX 21 AC3 THR B 61 GLY B 76 1 16 HELIX 22 AC4 CYS B 85 ALA B 96 1 12 HELIX 23 AC5 TYR B 111 ILE B 121 1 11 HELIX 24 AC6 LEU B 122 GLY B 126 5 5 HELIX 25 AC7 ILE B 136 ILE B 144 5 9 HELIX 26 AC8 ASP B 165 ALA B 177 1 13 HELIX 27 AC9 LYS B 195 GLY B 200 5 6 HELIX 28 AD1 CYS B 229 MET B 240 1 12 HELIX 29 AD2 ASP B 245 ARG B 257 1 13 HELIX 30 AD3 THR B 258 GLN B 279 1 22 HELIX 31 AD4 GLY B 296 PHE B 304 1 9 HELIX 32 AD5 THR B 320 ASP B 329 1 10 HELIX 33 AD6 GLN B 351 ILE B 358 1 8 HELIX 34 AD7 ASN B 379 ARG B 393 1 15 SHEET 1 AA1 7 GLY A 79 PHE A 83 0 SHEET 2 AA1 7 GLY A 221 ALA A 225 -1 O ALA A 223 N ALA A 81 SHEET 3 AA1 7 ILE A 203 ALA A 207 -1 N SER A 204 O VAL A 224 SHEET 4 AA1 7 ILE A 181 ASP A 185 1 N ILE A 184 O ILE A 205 SHEET 5 AA1 7 THR A 148 GLU A 154 1 N LEU A 153 O MET A 183 SHEET 6 AA1 7 HIS A 103 THR A 107 1 N HIS A 103 O LYS A 149 SHEET 7 AA1 7 THR A 128 PHE A 132 1 O GLY A 130 N VAL A 104 SHEET 1 AA2 4 VAL A 283 ASN A 287 0 SHEET 2 AA2 4 LEU A 310 LEU A 315 -1 O VAL A 314 N ARG A 285 SHEET 3 AA2 4 LEU A 370 HIS A 374 -1 O ILE A 371 N PHE A 313 SHEET 4 AA2 4 LEU A 346 ASN A 350 -1 N ASN A 350 O LEU A 370 SHEET 1 AA3 7 GLY B 79 PHE B 83 0 SHEET 2 AA3 7 GLY B 221 ALA B 225 -1 O ALA B 223 N ALA B 81 SHEET 3 AA3 7 ILE B 203 ALA B 207 -1 N GLN B 206 O THR B 222 SHEET 4 AA3 7 ILE B 181 ASP B 185 1 N ILE B 184 O ILE B 205 SHEET 5 AA3 7 THR B 148 GLU B 154 1 N LEU B 153 O MET B 183 SHEET 6 AA3 7 HIS B 103 THR B 107 1 N LEU B 105 O PHE B 152 SHEET 7 AA3 7 THR B 128 PHE B 132 1 O GLY B 130 N VAL B 104 SHEET 1 AA4 4 VAL B 283 ASN B 287 0 SHEET 2 AA4 4 LEU B 310 LEU B 315 -1 O VAL B 314 N ALA B 284 SHEET 3 AA4 4 LEU B 370 HIS B 374 -1 O ILE B 371 N PHE B 313 SHEET 4 AA4 4 LEU B 346 ASN B 350 -1 N ASN B 350 O LEU B 370 LINK NZ LYS A 210 C4A PLP A 404 1555 1555 1.29 LINK NZ LYS B 210 C4A PLP B 402 1555 1555 1.25 CISPEP 1 SER A 155 PRO A 156 0 -5.96 CISPEP 2 SER B 155 PRO B 156 0 -5.86 CRYST1 87.064 130.902 82.402 90.00 104.40 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011486 0.000000 0.002950 0.00000 SCALE2 0.000000 0.007639 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012529 0.00000