HEADER TRANSFERASE/TRANSFERASE INHIBITOR 05-APR-23 8SCV TITLE CRYSTAL STRUCTURE OF IRAK4-HSA COMPLEXED WITH BMS-986126; 6-((5-CYANO- TITLE 2 2-PYRIMIDINYL)AMINO)-N-((2R)-2-FLUORO-3-HYDROXHYLBUTYL)-4- TITLE 3 (ISOPROPYLAMINO)NICOTINAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IRAK-4,RENAL CARCINOMA ANTIGEN NY-REN-64; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 4; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: IRAK-4,RENAL CARCINOMA ANTIGEN NY-REN-64; COMPND 11 EC: 2.7.11.1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IRAK4; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: IRAK4; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KINASE, IRAK4, LIGAND, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.K.MUCKELBAUER,K.GHOSH REVDAT 1 12-FEB-25 8SCV 0 JRNL AUTH S.R.KUMAR,S.DUDHGOANKAR,J.B.SANTELLA,V.R.R.PAIDI,S.NAIR, JRNL AUTH 2 R.SISTLA,H.WU,D.S.GARDNER,S.STACHURA,C.L.CAVALLARO, JRNL AUTH 3 G.D.BROWN,W.J.PITTS,J.KEMPSON,A.J.TEBBEN,J.S.TOKARSKI,X.ZHU, JRNL AUTH 4 J.A.CARMAN,K.FOSTER,J.CACERES CORTES,G.EVERLOF,M.A.GALELLA, JRNL AUTH 5 A.SARJEANT,D.A.HOLLOWAY,L.FAN,X.LI,C.CHAUDHRY,G.LOCKE, JRNL AUTH 6 A.CHIMALAKONDRA,T.T.MARIAPPAN,S.RUEPP,P.A.ELZINGA,A.SAXENA, JRNL AUTH 7 D.XIE,S.E.KIEFER,C.YAN,J.A.NEWITT,K.GHOSH,R.K.ANUMULA, JRNL AUTH 8 J.S.SACK,J.A.TINO,P.H.CARTER,J.HYNES,J.V.DUNCIA JRNL TITL THE DISCOVERY OF IRAK4 INHIBITOR CLINICAL CANDIDATES JRNL TITL 2 BMS-986126 AND BMS-986147 FOR THE TREATMENT OF AUTOIMMUNE JRNL TITL 3 DISEASES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 17700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 899 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.85 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.47 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2761 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2530 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2620 REMARK 3 BIN R VALUE (WORKING SET) : 0.2497 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.11 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 141 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4073 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 64 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.38160 REMARK 3 B22 (A**2) : -18.94720 REMARK 3 B33 (A**2) : 21.32880 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.380 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.335 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.906 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4214 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5739 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1371 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 94 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 657 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4214 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 590 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4918 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.23 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.56 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.87 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SCV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-23. REMARK 100 THE DEPOSITION ID IS D_1000273557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17703 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.63200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.6 TO 2.9 M AMMONIUM SULPHATE IN 25 REMARK 280 MM HEPES PH 6.4 TO 7.5 AT 293K, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 0.838858 -0.246307 0.485377 0.00000 REMARK 290 SMTRY2 2 -0.246395 -0.966996 -0.065037 0.00000 REMARK 290 SMTRY3 2 0.485453 -0.065024 -0.871862 0.00000 REMARK 290 SMTRY1 3 -0.859131 0.047470 -0.509506 0.00000 REMARK 290 SMTRY2 3 0.047478 -0.984001 -0.171721 0.00000 REMARK 290 SMTRY3 3 -0.509591 -0.171723 0.843132 0.00000 REMARK 290 SMTRY1 4 -0.979727 0.198837 0.024129 0.00000 REMARK 290 SMTRY2 4 0.198918 0.950997 0.236758 0.00000 REMARK 290 SMTRY3 4 0.024138 0.236747 -0.971270 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 -85.11442 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 -38.27507 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.94382 REMARK 290 SMTRY1 6 0.838858 -0.246307 0.485377 -85.11442 REMARK 290 SMTRY2 6 -0.246395 -0.966996 -0.065037 -38.27507 REMARK 290 SMTRY3 6 0.485453 -0.065024 -0.871862 26.94382 REMARK 290 SMTRY1 7 -0.859131 0.047470 -0.509506 -85.11442 REMARK 290 SMTRY2 7 0.047478 -0.984001 -0.171721 -38.27507 REMARK 290 SMTRY3 7 -0.509591 -0.171723 0.843132 26.94382 REMARK 290 SMTRY1 8 -0.979727 0.198837 0.024129 -85.11442 REMARK 290 SMTRY2 8 0.198918 0.950997 0.236758 -38.27507 REMARK 290 SMTRY3 8 0.024138 0.236747 -0.971270 26.94382 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 156 REMARK 465 ALA A 157 REMARK 465 MET A 158 REMARK 465 GLY A 159 REMARK 465 VAL A 160 REMARK 465 SER A 161 REMARK 465 ASP A 162 REMARK 465 VAL A 219 REMARK 465 ASP A 220 REMARK 465 GLU A 337 REMARK 465 LYS A 338 REMARK 465 PHE A 339 REMARK 465 ALA A 340 REMARK 465 ALA A 459 REMARK 465 SER A 460 REMARK 465 GLY B 156 REMARK 465 ALA B 157 REMARK 465 MET B 158 REMARK 465 GLY B 159 REMARK 465 VAL B 160 REMARK 465 SER B 161 REMARK 465 ASP B 162 REMARK 465 THR B 163 REMARK 465 ARG B 164 REMARK 465 SER B 186 REMARK 465 VAL B 187 REMARK 465 GLY B 188 REMARK 465 ASN B 206 REMARK 465 ASN B 207 REMARK 465 ALA B 216 REMARK 465 ALA B 217 REMARK 465 MET B 218 REMARK 465 VAL B 219 REMARK 465 ASP B 220 REMARK 465 ILE B 221 REMARK 465 THR B 222 REMARK 465 THR B 223 REMARK 465 LEU B 249 REMARK 465 GLY B 250 REMARK 465 PHE B 251 REMARK 465 SER B 252 REMARK 465 SER B 253 REMARK 465 ASP B 254 REMARK 465 GLY B 255 REMARK 465 ASP B 256 REMARK 465 ALA B 333 REMARK 465 ARG B 334 REMARK 465 ALA B 335 REMARK 465 SER B 336 REMARK 465 GLU B 337 REMARK 465 LYS B 338 REMARK 465 PHE B 339 REMARK 465 ALA B 340 REMARK 465 GLN B 341 REMARK 465 GLY B 350 REMARK 465 THR B 351 REMARK 465 SER B 460 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 221 CG1 CG2 CD1 REMARK 470 GLU A 225 CG CD OE1 OE2 REMARK 470 LYS A 227 CG CD CE NZ REMARK 470 GLN A 228 CG CD OE1 NE2 REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 LYS A 239 CG CD CE NZ REMARK 470 ASP A 254 CG OD1 OD2 REMARK 470 ASP A 256 CG OD1 OD2 REMARK 470 ASP A 257 CG OD1 OD2 REMARK 470 SER A 336 OG REMARK 470 GLN A 341 CG CD OE1 NE2 REMARK 470 ARG A 347 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 367 CG CD CE NZ REMARK 470 GLU A 389 CG CD OE1 OE2 REMARK 470 LYS A 400 CG CD CE NZ REMARK 470 GLU A 401 CG CD OE1 OE2 REMARK 470 GLU A 406 CG CD OE1 OE2 REMARK 470 GLU A 407 CG CD OE1 OE2 REMARK 470 LYS A 408 CE NZ REMARK 470 GLU A 411 CG CD OE1 OE2 REMARK 470 LYS A 416 CG CD CE NZ REMARK 470 GLU A 427 CG CD OE1 OE2 REMARK 470 LYS A 440 CG CD CE NZ REMARK 470 LYS A 443 CG CD CE NZ REMARK 470 LYS A 448 CG CD CE NZ REMARK 470 GLN A 455 CG CD OE1 NE2 REMARK 470 PHE B 165 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS B 166 CG ND1 CD2 CE1 NE2 REMARK 470 PHE B 168 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE B 170 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 174 CG CD CE NZ REMARK 470 ASN B 178 CG OD1 ND2 REMARK 470 ASN B 179 CG OD1 ND2 REMARK 470 PHE B 180 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 181 CG OD1 OD2 REMARK 470 GLU B 182 CG CD OE1 OE2 REMARK 470 ARG B 183 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 191 CG CD CE NZ REMARK 470 GLU B 194 CG CD OE1 OE2 REMARK 470 LYS B 202 CG CD CE NZ REMARK 470 TYR B 204 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 213 CG CD CE NZ REMARK 470 LYS B 214 CG CD CE NZ REMARK 470 GLU B 224 CG CD OE1 OE2 REMARK 470 GLU B 225 CG CD OE1 OE2 REMARK 470 LEU B 226 CG CD1 CD2 REMARK 470 LYS B 227 CG CD CE NZ REMARK 470 GLN B 228 CG CD OE1 NE2 REMARK 470 GLN B 229 CG CD OE1 NE2 REMARK 470 PHE B 230 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 231 CG OD1 OD2 REMARK 470 GLN B 232 CG CD OE1 NE2 REMARK 470 GLU B 233 CG CD OE1 OE2 REMARK 470 LYS B 235 CG CD CE NZ REMARK 470 VAL B 236 CG1 CG2 REMARK 470 MET B 237 CG SD CE REMARK 470 LYS B 239 CG CD CE NZ REMARK 470 GLN B 241 CG CD OE1 NE2 REMARK 470 GLU B 247 CG CD OE1 OE2 REMARK 470 ASP B 257 CG OD1 OD2 REMARK 470 VAL B 261 CG1 CG2 REMARK 470 ARG B 310 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 326 CG CD CE NZ REMARK 470 ARG B 347 CZ NH1 NH2 REMARK 470 ILE B 364 CG1 CG2 CD1 REMARK 470 LYS B 367 CG CD CE NZ REMARK 470 GLU B 389 CG CD OE1 OE2 REMARK 470 GLU B 392 CG CD OE1 OE2 REMARK 470 LYS B 400 CG CD CE NZ REMARK 470 GLU B 401 CG CD OE1 OE2 REMARK 470 GLU B 402 CG CD OE1 OE2 REMARK 470 GLU B 404 CG CD OE1 OE2 REMARK 470 GLU B 407 CG CD OE1 OE2 REMARK 470 LYS B 408 CG CD CE NZ REMARK 470 GLU B 411 CG CD OE1 OE2 REMARK 470 LYS B 443 CG CD CE NZ REMARK 470 LYS B 448 CG CD CE NZ REMARK 470 LYS B 449 CD CE NZ REMARK 470 GLN B 452 CG CD OE1 NE2 REMARK 470 GLN B 455 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 181 99.38 -66.89 REMARK 500 ASN A 206 69.79 35.25 REMARK 500 ASN A 207 -0.21 65.74 REMARK 500 THR A 223 -65.74 -95.05 REMARK 500 GLU A 224 57.31 146.73 REMARK 500 GLU A 225 -54.97 57.82 REMARK 500 ASP A 254 95.60 4.12 REMARK 500 ARG A 310 -10.35 74.49 REMARK 500 ASP A 329 87.11 59.49 REMARK 500 THR A 342 89.71 -161.19 REMARK 500 TPO A 345 -78.70 -120.23 REMARK 500 SEP A 346 143.83 93.07 REMARK 500 ARG A 347 102.05 56.12 REMARK 500 HIS A 390 35.26 -97.19 REMARK 500 GLU A 406 6.33 45.95 REMARK 500 ASP B 181 90.92 -65.83 REMARK 500 GLU B 182 -4.63 -57.09 REMARK 500 ASN B 190 -32.08 -132.17 REMARK 500 GLU B 194 -158.12 -161.07 REMARK 500 ARG B 310 -10.79 73.66 REMARK 500 ASP B 329 86.09 59.41 REMARK 500 HIS B 390 35.71 -97.53 REMARK 500 GLU B 406 6.93 45.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TPO A 345 SEP A 346 -149.95 REMARK 500 REMARK 500 REMARK: NULL DBREF 8SCV A 160 460 UNP Q9NWZ3 IRAK4_HUMAN 36 336 DBREF 8SCV B 160 460 UNP Q9NWZ3 IRAK4_HUMAN 36 336 SEQADV 8SCV GLY A 156 UNP Q9NWZ3 EXPRESSION TAG SEQADV 8SCV ALA A 157 UNP Q9NWZ3 EXPRESSION TAG SEQADV 8SCV MET A 158 UNP Q9NWZ3 EXPRESSION TAG SEQADV 8SCV GLY A 159 UNP Q9NWZ3 EXPRESSION TAG SEQADV 8SCV GLY B 156 UNP Q9NWZ3 EXPRESSION TAG SEQADV 8SCV ALA B 157 UNP Q9NWZ3 EXPRESSION TAG SEQADV 8SCV MET B 158 UNP Q9NWZ3 EXPRESSION TAG SEQADV 8SCV GLY B 159 UNP Q9NWZ3 EXPRESSION TAG SEQRES 1 A 305 GLY ALA MET GLY VAL SER ASP THR ARG PHE HIS SER PHE SEQRES 2 A 305 SER PHE TYR GLU LEU LYS ASN VAL THR ASN ASN PHE ASP SEQRES 3 A 305 GLU ARG PRO ILE SER VAL GLY GLY ASN LYS MET GLY GLU SEQRES 4 A 305 GLY GLY PHE GLY VAL VAL TYR LYS GLY TYR VAL ASN ASN SEQRES 5 A 305 THR THR VAL ALA VAL LYS LYS LEU ALA ALA MET VAL ASP SEQRES 6 A 305 ILE THR THR GLU GLU LEU LYS GLN GLN PHE ASP GLN GLU SEQRES 7 A 305 ILE LYS VAL MET ALA LYS CYS GLN HIS GLU ASN LEU VAL SEQRES 8 A 305 GLU LEU LEU GLY PHE SER SER ASP GLY ASP ASP LEU CYS SEQRES 9 A 305 LEU VAL TYR VAL TYR MET PRO ASN GLY SER LEU LEU ASP SEQRES 10 A 305 ARG LEU SER CYS LEU ASP GLY THR PRO PRO LEU SEP TRP SEQRES 11 A 305 HIS MET ARG CYS LYS ILE ALA GLN GLY ALA ALA ASN GLY SEQRES 12 A 305 ILE ASN PHE LEU HIS GLU ASN HIS HIS ILE HIS ARG ASP SEQRES 13 A 305 ILE LYS SER ALA ASN ILE LEU LEU ASP GLU ALA PHE THR SEQRES 14 A 305 ALA LYS ILE SER ASP PHE GLY LEU ALA ARG ALA SER GLU SEQRES 15 A 305 LYS PHE ALA GLN THR VAL MET TPO SEP ARG ILE VAL GLY SEQRES 16 A 305 THR THR ALA TYR MET ALA PRO GLU ALA LEU ARG GLY GLU SEQRES 17 A 305 ILE THR PRO LYS SER ASP ILE TYR SER PHE GLY VAL VAL SEQRES 18 A 305 LEU LEU GLU ILE ILE THR GLY LEU PRO ALA VAL ASP GLU SEQRES 19 A 305 HIS ARG GLU PRO GLN LEU LEU LEU ASP ILE LYS GLU GLU SEQRES 20 A 305 ILE GLU ASP GLU GLU LYS THR ILE GLU ASP TYR ILE ASP SEQRES 21 A 305 LYS LYS MET ASN ASP ALA ASP SER THR SER VAL GLU ALA SEQRES 22 A 305 MET TYR SER VAL ALA SER GLN CYS LEU HIS GLU LYS LYS SEQRES 23 A 305 ASN LYS ARG PRO ASP ILE LYS LYS VAL GLN GLN LEU LEU SEQRES 24 A 305 GLN GLU MET THR ALA SER SEQRES 1 B 305 GLY ALA MET GLY VAL SER ASP THR ARG PHE HIS SER PHE SEQRES 2 B 305 SER PHE TYR GLU LEU LYS ASN VAL THR ASN ASN PHE ASP SEQRES 3 B 305 GLU ARG PRO ILE SER VAL GLY GLY ASN LYS MET GLY GLU SEQRES 4 B 305 GLY GLY PHE GLY VAL VAL TYR LYS GLY TYR VAL ASN ASN SEQRES 5 B 305 THR THR VAL ALA VAL LYS LYS LEU ALA ALA MET VAL ASP SEQRES 6 B 305 ILE THR THR GLU GLU LEU LYS GLN GLN PHE ASP GLN GLU SEQRES 7 B 305 ILE LYS VAL MET ALA LYS CYS GLN HIS GLU ASN LEU VAL SEQRES 8 B 305 GLU LEU LEU GLY PHE SER SER ASP GLY ASP ASP LEU CYS SEQRES 9 B 305 LEU VAL TYR VAL TYR MET PRO ASN GLY SER LEU LEU ASP SEQRES 10 B 305 ARG LEU SER CYS LEU ASP GLY THR PRO PRO LEU SER TRP SEQRES 11 B 305 HIS MET ARG CYS LYS ILE ALA GLN GLY ALA ALA ASN GLY SEQRES 12 B 305 ILE ASN PHE LEU HIS GLU ASN HIS HIS ILE HIS ARG ASP SEQRES 13 B 305 ILE LYS SER ALA ASN ILE LEU LEU ASP GLU ALA PHE THR SEQRES 14 B 305 ALA LYS ILE SER ASP PHE GLY LEU ALA ARG ALA SER GLU SEQRES 15 B 305 LYS PHE ALA GLN THR VAL MET TPO SEP ARG ILE VAL GLY SEQRES 16 B 305 THR THR ALA TYR MET ALA PRO GLU ALA LEU ARG GLY GLU SEQRES 17 B 305 ILE THR PRO LYS SER ASP ILE TYR SER PHE GLY VAL VAL SEQRES 18 B 305 LEU LEU GLU ILE ILE THR GLY LEU PRO ALA VAL ASP GLU SEQRES 19 B 305 HIS ARG GLU PRO GLN LEU LEU LEU ASP ILE LYS GLU GLU SEQRES 20 B 305 ILE GLU ASP GLU GLU LYS THR ILE GLU ASP TYR ILE ASP SEQRES 21 B 305 LYS LYS MET ASN ASP ALA ASP SER THR SER VAL GLU ALA SEQRES 22 B 305 MET TYR SER VAL ALA SER GLN CYS LEU HIS GLU LYS LYS SEQRES 23 B 305 ASN LYS ARG PRO ASP ILE LYS LYS VAL GLN GLN LEU LEU SEQRES 24 B 305 GLN GLU MET THR ALA SER MODRES 8SCV SEP A 284 SER MODIFIED RESIDUE MODRES 8SCV TPO A 345 THR MODIFIED RESIDUE MODRES 8SCV SEP A 346 SER MODIFIED RESIDUE MODRES 8SCV TPO B 345 THR MODIFIED RESIDUE MODRES 8SCV SEP B 346 SER MODIFIED RESIDUE HET SEP A 284 10 HET TPO A 345 11 HET SEP A 346 10 HET TPO B 345 11 HET SEP B 346 10 HET ZVG A 501 29 HET SO4 A 502 5 HET ZVG B 501 29 HET SO4 B 502 5 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM ZVG 6-[(5-CYANOPYRIMIDIN-2-YL)AMINO]-N-[(2R)-2-FLUORO-3- HETNAM 2 ZVG HYDROXY-3-METHYLBUTYL]-4-[(PROPAN-2-YL)AMINO]PYRIDINE- HETNAM 3 ZVG 3-CARBOXAMIDE HETNAM SO4 SULFATE ION HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP 3(C3 H8 N O6 P) FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 3 ZVG 2(C19 H24 F N7 O2) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *64(H2 O) HELIX 1 AA1 SER A 169 THR A 177 1 9 HELIX 2 AA2 PRO A 184 GLY A 188 5 5 HELIX 3 AA3 GLU A 225 CYS A 240 1 16 HELIX 4 AA4 SER A 269 SER A 275 1 7 HELIX 5 AA5 CYS A 276 THR A 280 5 5 HELIX 6 AA6 SEP A 284 ASN A 305 1 22 HELIX 7 AA7 LYS A 313 ALA A 315 5 3 HELIX 8 AA8 PRO A 357 ARG A 361 5 5 HELIX 9 AA9 THR A 365 GLY A 383 1 19 HELIX 10 AB1 LEU A 395 ASP A 405 1 11 HELIX 11 AB2 ASP A 422 LEU A 437 1 16 HELIX 12 AB3 LYS A 440 ARG A 444 5 5 HELIX 13 AB4 ASP A 446 THR A 458 1 13 HELIX 14 AB5 TYR B 171 THR B 177 1 7 HELIX 15 AB6 GLU B 225 CYS B 240 1 16 HELIX 16 AB7 SER B 269 SER B 275 1 7 HELIX 17 AB8 CYS B 276 THR B 280 5 5 HELIX 18 AB9 SER B 284 ASN B 305 1 22 HELIX 19 AC1 LYS B 313 ALA B 315 5 3 HELIX 20 AC2 ALA B 356 ARG B 361 1 6 HELIX 21 AC3 THR B 365 GLY B 383 1 19 HELIX 22 AC4 LEU B 395 ASP B 405 1 11 HELIX 23 AC5 ASP B 422 LEU B 437 1 16 HELIX 24 AC6 LYS B 440 ARG B 444 5 5 HELIX 25 AC7 ASP B 446 THR B 458 1 13 SHEET 1 AA1 6 HIS A 166 SER A 167 0 SHEET 2 AA1 6 LEU A 248 SER A 252 1 O PHE A 251 N HIS A 166 SHEET 3 AA1 6 CYS A 259 VAL A 263 -1 O VAL A 261 N LEU A 249 SHEET 4 AA1 6 THR A 208 LEU A 215 -1 N ALA A 211 O TYR A 262 SHEET 5 AA1 6 GLY A 198 VAL A 205 -1 N TYR A 201 O VAL A 212 SHEET 6 AA1 6 LYS A 191 GLU A 194 -1 N GLY A 193 O VAL A 200 SHEET 1 AA2 2 HIS A 307 ILE A 308 0 SHEET 2 AA2 2 ARG A 334 ALA A 335 -1 O ARG A 334 N ILE A 308 SHEET 1 AA3 2 ILE A 317 LEU A 319 0 SHEET 2 AA3 2 ALA A 325 ILE A 327 -1 O LYS A 326 N LEU A 318 SHEET 1 AA4 2 VAL A 343 MET A 344 0 SHEET 2 AA4 2 GLU A 363 ILE A 364 -1 O ILE A 364 N VAL A 343 SHEET 1 AA5 4 LYS B 191 GLY B 193 0 SHEET 2 AA5 4 VAL B 199 GLY B 203 -1 O VAL B 200 N GLY B 193 SHEET 3 AA5 4 VAL B 210 LYS B 214 -1 O VAL B 210 N GLY B 203 SHEET 4 AA5 4 CYS B 259 VAL B 263 -1 O LEU B 260 N LYS B 213 SHEET 1 AA6 2 ILE B 317 LEU B 319 0 SHEET 2 AA6 2 ALA B 325 ILE B 327 -1 O LYS B 326 N LEU B 318 LINK C LEU A 283 N SEP A 284 1555 1555 1.35 LINK C SEP A 284 N TRP A 285 1555 1555 1.37 LINK C MET A 344 N TPO A 345 1555 1555 1.33 LINK C TPO A 345 N SEP A 346 1555 1555 1.33 LINK C SEP A 346 N ARG A 347 1555 1555 1.33 LINK C MET B 344 N TPO B 345 1555 1555 1.34 LINK C TPO B 345 N SEP B 346 1555 1555 1.34 LINK C SEP B 346 N ARG B 347 1555 1555 1.34 CISPEP 1 GLU A 224 GLU A 225 0 10.75 CISPEP 2 GLU A 392 PRO A 393 0 -0.40 CISPEP 3 GLU B 392 PRO B 393 0 1.31 CRYST1 86.289 103.754 139.753 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 -0.001167 -0.011446 -0.001389 0.51859 SCALE2 -0.002558 -0.000862 0.009252 0.11304 SCALE3 -0.006861 0.000919 -0.001811 0.05144 CONECT 900 906 CONECT 906 900 907 CONECT 907 906 908 910 CONECT 908 907 909 CONECT 909 908 912 CONECT 910 907 911 916 CONECT 911 910 CONECT 912 909 913 914 915 CONECT 913 912 CONECT 914 912 CONECT 915 912 CONECT 916 910 CONECT 1347 1353 CONECT 1353 1347 1354 CONECT 1354 1353 1355 1362 CONECT 1355 1354 1356 1357 CONECT 1356 1355 CONECT 1357 1355 1358 CONECT 1358 1357 1359 1360 1361 CONECT 1359 1358 CONECT 1360 1358 CONECT 1361 1358 CONECT 1362 1354 1363 1364 CONECT 1363 1362 CONECT 1364 1362 1365 CONECT 1365 1364 1366 1368 CONECT 1366 1365 1367 CONECT 1367 1366 1370 CONECT 1368 1365 1369 1374 CONECT 1369 1368 CONECT 1370 1367 1371 1372 1373 CONECT 1371 1370 CONECT 1372 1370 CONECT 1373 1370 CONECT 1374 1368 CONECT 3238 3244 CONECT 3244 3238 3245 CONECT 3245 3244 3246 3253 CONECT 3246 3245 3247 3248 CONECT 3247 3246 CONECT 3248 3246 3249 CONECT 3249 3248 3250 3251 3252 CONECT 3250 3249 CONECT 3251 3249 CONECT 3252 3249 CONECT 3253 3245 3254 3255 CONECT 3254 3253 CONECT 3255 3253 3256 CONECT 3256 3255 3257 3259 CONECT 3257 3256 3258 CONECT 3258 3257 3261 CONECT 3259 3256 3260 3265 CONECT 3260 3259 CONECT 3261 3258 3262 3263 3264 CONECT 3262 3261 CONECT 3263 3261 CONECT 3264 3261 CONECT 3265 3259 CONECT 4085 4090 CONECT 4086 4087 4092 CONECT 4087 4086 4088 4089 CONECT 4088 4087 4094 CONECT 4089 4087 4093 CONECT 4090 4085 4091 4102 CONECT 4091 4090 CONECT 4092 4086 CONECT 4093 4089 4095 CONECT 4094 4088 4095 CONECT 4095 4093 4094 4096 CONECT 4096 4095 4097 CONECT 4097 4096 4098 4100 CONECT 4098 4097 4099 CONECT 4099 4098 4103 CONECT 4100 4097 4101 CONECT 4101 4100 4102 4103 CONECT 4102 4090 4101 CONECT 4103 4099 4101 4104 CONECT 4104 4103 4105 4106 CONECT 4105 4104 CONECT 4106 4104 4107 CONECT 4107 4106 4108 CONECT 4108 4107 4109 4110 CONECT 4109 4108 CONECT 4110 4108 4111 4112 4113 CONECT 4111 4110 CONECT 4112 4110 CONECT 4113 4110 CONECT 4114 4115 4116 4117 4118 CONECT 4115 4114 CONECT 4116 4114 CONECT 4117 4114 CONECT 4118 4114 CONECT 4119 4124 CONECT 4120 4121 4126 CONECT 4121 4120 4122 4123 CONECT 4122 4121 4128 CONECT 4123 4121 4127 CONECT 4124 4119 4125 4136 CONECT 4125 4124 CONECT 4126 4120 CONECT 4127 4123 4129 CONECT 4128 4122 4129 CONECT 4129 4127 4128 4130 CONECT 4130 4129 4131 CONECT 4131 4130 4132 4134 CONECT 4132 4131 4133 CONECT 4133 4132 4137 CONECT 4134 4131 4135 CONECT 4135 4134 4136 4137 CONECT 4136 4124 4135 CONECT 4137 4133 4135 4138 CONECT 4138 4137 4139 4140 CONECT 4139 4138 CONECT 4140 4138 4141 CONECT 4141 4140 4142 CONECT 4142 4141 4143 4144 CONECT 4143 4142 CONECT 4144 4142 4145 4146 4147 CONECT 4145 4144 CONECT 4146 4144 CONECT 4147 4144 CONECT 4148 4149 4150 4151 4152 CONECT 4149 4148 CONECT 4150 4148 CONECT 4151 4148 CONECT 4152 4148 MASTER 436 0 9 25 18 0 0 6 4205 2 126 48 END