data_8SEJ # _entry.id 8SEJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8SEJ pdb_00008sej 10.2210/pdb8sej/pdb WWPDB D_1000273261 ? ? EMDB EMD-40416 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-04-03 2 'Structure model' 1 1 2024-04-10 3 'Structure model' 1 2 2024-06-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' 3 2 'Structure model' '_citation_author.identifier_ORCID' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' 7 3 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8SEJ _pdbx_database_status.recvd_initial_deposition_date 2023-04-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Type I beta-amyloid 42 Filaments from Down syndrome' _pdbx_database_related.db_id EMD-40416 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 4 _pdbx_contact_author.email jiang12@purdue.edu _pdbx_contact_author.name_first Wen _pdbx_contact_author.name_last Jiang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-1292-2411 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hoq, M.R.' 1 0000-0003-2943-3531 'Bharath, S.R.' 2 0000-0002-8071-944X 'Vago, F.S.' 3 ? 'Jiang, W.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1545-9985 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 31 _citation.language ? _citation.page_first 903 _citation.page_last 909 _citation.title 'Cryo-EM structures of amyloid-beta and tau filaments in Down syndrome.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41594-024-01252-3 _citation.pdbx_database_id_PubMed 38553642 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fernandez, A.' 1 ? primary 'Hoq, M.R.' 2 ? primary 'Hallinan, G.I.' 3 ? primary 'Li, D.' 4 ? primary 'Bharath, S.R.' 5 ? primary 'Vago, F.S.' 6 ? primary 'Zhang, X.' 7 ? primary 'Ozcan, K.A.' 8 0000-0002-9337-9798 primary 'Newell, K.L.' 9 ? primary 'Garringer, H.J.' 10 0000-0002-1899-7676 primary 'Jiang, W.' 11 0000-0002-1292-2411 primary 'Ghetti, B.' 12 0000-0002-1842-8019 primary 'Vidal, R.' 13 0000-0002-5803-3871 # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Amyloid-beta protein 42' _entity.formula_weight 3560.128 _entity.pdbx_number_of_molecules 10 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'Type I beta-amyloid 42 filaments from Down syndrome Case 2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA _entity_poly.pdbx_seq_one_letter_code_can GYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H,I,J _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 TYR n 1 3 GLU n 1 4 VAL n 1 5 HIS n 1 6 HIS n 1 7 GLN n 1 8 LYS n 1 9 LEU n 1 10 VAL n 1 11 PHE n 1 12 PHE n 1 13 ALA n 1 14 GLU n 1 15 ASP n 1 16 VAL n 1 17 GLY n 1 18 SER n 1 19 ASN n 1 20 LYS n 1 21 GLY n 1 22 ALA n 1 23 ILE n 1 24 ILE n 1 25 GLY n 1 26 LEU n 1 27 MET n 1 28 VAL n 1 29 GLY n 1 30 GLY n 1 31 VAL n 1 32 VAL n 1 33 ILE n 1 34 ALA n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 34 _entity_src_nat.common_name human _entity_src_nat.pdbx_organism_scientific 'Homo sapiens' _entity_src_nat.pdbx_ncbi_taxonomy_id 9606 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 9 9 GLY GLY A . n A 1 2 TYR 2 10 10 TYR TYR A . n A 1 3 GLU 3 11 11 GLU GLU A . n A 1 4 VAL 4 12 12 VAL VAL A . n A 1 5 HIS 5 13 13 HIS HIS A . n A 1 6 HIS 6 14 14 HIS HIS A . n A 1 7 GLN 7 15 15 GLN GLN A . n A 1 8 LYS 8 16 16 LYS LYS A . n A 1 9 LEU 9 17 17 LEU LEU A . n A 1 10 VAL 10 18 18 VAL VAL A . n A 1 11 PHE 11 19 19 PHE PHE A . n A 1 12 PHE 12 20 20 PHE PHE A . n A 1 13 ALA 13 21 21 ALA ALA A . n A 1 14 GLU 14 22 22 GLU GLU A . n A 1 15 ASP 15 23 23 ASP ASP A . n A 1 16 VAL 16 24 24 VAL VAL A . n A 1 17 GLY 17 25 25 GLY GLY A . n A 1 18 SER 18 26 26 SER SER A . n A 1 19 ASN 19 27 27 ASN ASN A . n A 1 20 LYS 20 28 28 LYS LYS A . n A 1 21 GLY 21 29 29 GLY GLY A . n A 1 22 ALA 22 30 30 ALA ALA A . n A 1 23 ILE 23 31 31 ILE ILE A . n A 1 24 ILE 24 32 32 ILE ILE A . n A 1 25 GLY 25 33 33 GLY GLY A . n A 1 26 LEU 26 34 34 LEU LEU A . n A 1 27 MET 27 35 35 MET MET A . n A 1 28 VAL 28 36 36 VAL VAL A . n A 1 29 GLY 29 37 37 GLY GLY A . n A 1 30 GLY 30 38 38 GLY GLY A . n A 1 31 VAL 31 39 39 VAL VAL A . n A 1 32 VAL 32 40 40 VAL VAL A . n A 1 33 ILE 33 41 41 ILE ILE A . n A 1 34 ALA 34 42 42 ALA ALA A . n B 1 1 GLY 1 9 9 GLY GLY B . n B 1 2 TYR 2 10 10 TYR TYR B . n B 1 3 GLU 3 11 11 GLU GLU B . n B 1 4 VAL 4 12 12 VAL VAL B . n B 1 5 HIS 5 13 13 HIS HIS B . n B 1 6 HIS 6 14 14 HIS HIS B . n B 1 7 GLN 7 15 15 GLN GLN B . n B 1 8 LYS 8 16 16 LYS LYS B . n B 1 9 LEU 9 17 17 LEU LEU B . n B 1 10 VAL 10 18 18 VAL VAL B . n B 1 11 PHE 11 19 19 PHE PHE B . n B 1 12 PHE 12 20 20 PHE PHE B . n B 1 13 ALA 13 21 21 ALA ALA B . n B 1 14 GLU 14 22 22 GLU GLU B . n B 1 15 ASP 15 23 23 ASP ASP B . n B 1 16 VAL 16 24 24 VAL VAL B . n B 1 17 GLY 17 25 25 GLY GLY B . n B 1 18 SER 18 26 26 SER SER B . n B 1 19 ASN 19 27 27 ASN ASN B . n B 1 20 LYS 20 28 28 LYS LYS B . n B 1 21 GLY 21 29 29 GLY GLY B . n B 1 22 ALA 22 30 30 ALA ALA B . n B 1 23 ILE 23 31 31 ILE ILE B . n B 1 24 ILE 24 32 32 ILE ILE B . n B 1 25 GLY 25 33 33 GLY GLY B . n B 1 26 LEU 26 34 34 LEU LEU B . n B 1 27 MET 27 35 35 MET MET B . n B 1 28 VAL 28 36 36 VAL VAL B . n B 1 29 GLY 29 37 37 GLY GLY B . n B 1 30 GLY 30 38 38 GLY GLY B . n B 1 31 VAL 31 39 39 VAL VAL B . n B 1 32 VAL 32 40 40 VAL VAL B . n B 1 33 ILE 33 41 41 ILE ILE B . n B 1 34 ALA 34 42 42 ALA ALA B . n C 1 1 GLY 1 9 9 GLY GLY C . n C 1 2 TYR 2 10 10 TYR TYR C . n C 1 3 GLU 3 11 11 GLU GLU C . n C 1 4 VAL 4 12 12 VAL VAL C . n C 1 5 HIS 5 13 13 HIS HIS C . n C 1 6 HIS 6 14 14 HIS HIS C . n C 1 7 GLN 7 15 15 GLN GLN C . n C 1 8 LYS 8 16 16 LYS LYS C . n C 1 9 LEU 9 17 17 LEU LEU C . n C 1 10 VAL 10 18 18 VAL VAL C . n C 1 11 PHE 11 19 19 PHE PHE C . n C 1 12 PHE 12 20 20 PHE PHE C . n C 1 13 ALA 13 21 21 ALA ALA C . n C 1 14 GLU 14 22 22 GLU GLU C . n C 1 15 ASP 15 23 23 ASP ASP C . n C 1 16 VAL 16 24 24 VAL VAL C . n C 1 17 GLY 17 25 25 GLY GLY C . n C 1 18 SER 18 26 26 SER SER C . n C 1 19 ASN 19 27 27 ASN ASN C . n C 1 20 LYS 20 28 28 LYS LYS C . n C 1 21 GLY 21 29 29 GLY GLY C . n C 1 22 ALA 22 30 30 ALA ALA C . n C 1 23 ILE 23 31 31 ILE ILE C . n C 1 24 ILE 24 32 32 ILE ILE C . n C 1 25 GLY 25 33 33 GLY GLY C . n C 1 26 LEU 26 34 34 LEU LEU C . n C 1 27 MET 27 35 35 MET MET C . n C 1 28 VAL 28 36 36 VAL VAL C . n C 1 29 GLY 29 37 37 GLY GLY C . n C 1 30 GLY 30 38 38 GLY GLY C . n C 1 31 VAL 31 39 39 VAL VAL C . n C 1 32 VAL 32 40 40 VAL VAL C . n C 1 33 ILE 33 41 41 ILE ILE C . n C 1 34 ALA 34 42 42 ALA ALA C . n D 1 1 GLY 1 9 9 GLY GLY D . n D 1 2 TYR 2 10 10 TYR TYR D . n D 1 3 GLU 3 11 11 GLU GLU D . n D 1 4 VAL 4 12 12 VAL VAL D . n D 1 5 HIS 5 13 13 HIS HIS D . n D 1 6 HIS 6 14 14 HIS HIS D . n D 1 7 GLN 7 15 15 GLN GLN D . n D 1 8 LYS 8 16 16 LYS LYS D . n D 1 9 LEU 9 17 17 LEU LEU D . n D 1 10 VAL 10 18 18 VAL VAL D . n D 1 11 PHE 11 19 19 PHE PHE D . n D 1 12 PHE 12 20 20 PHE PHE D . n D 1 13 ALA 13 21 21 ALA ALA D . n D 1 14 GLU 14 22 22 GLU GLU D . n D 1 15 ASP 15 23 23 ASP ASP D . n D 1 16 VAL 16 24 24 VAL VAL D . n D 1 17 GLY 17 25 25 GLY GLY D . n D 1 18 SER 18 26 26 SER SER D . n D 1 19 ASN 19 27 27 ASN ASN D . n D 1 20 LYS 20 28 28 LYS LYS D . n D 1 21 GLY 21 29 29 GLY GLY D . n D 1 22 ALA 22 30 30 ALA ALA D . n D 1 23 ILE 23 31 31 ILE ILE D . n D 1 24 ILE 24 32 32 ILE ILE D . n D 1 25 GLY 25 33 33 GLY GLY D . n D 1 26 LEU 26 34 34 LEU LEU D . n D 1 27 MET 27 35 35 MET MET D . n D 1 28 VAL 28 36 36 VAL VAL D . n D 1 29 GLY 29 37 37 GLY GLY D . n D 1 30 GLY 30 38 38 GLY GLY D . n D 1 31 VAL 31 39 39 VAL VAL D . n D 1 32 VAL 32 40 40 VAL VAL D . n D 1 33 ILE 33 41 41 ILE ILE D . n D 1 34 ALA 34 42 42 ALA ALA D . n E 1 1 GLY 1 9 9 GLY GLY E . n E 1 2 TYR 2 10 10 TYR TYR E . n E 1 3 GLU 3 11 11 GLU GLU E . n E 1 4 VAL 4 12 12 VAL VAL E . n E 1 5 HIS 5 13 13 HIS HIS E . n E 1 6 HIS 6 14 14 HIS HIS E . n E 1 7 GLN 7 15 15 GLN GLN E . n E 1 8 LYS 8 16 16 LYS LYS E . n E 1 9 LEU 9 17 17 LEU LEU E . n E 1 10 VAL 10 18 18 VAL VAL E . n E 1 11 PHE 11 19 19 PHE PHE E . n E 1 12 PHE 12 20 20 PHE PHE E . n E 1 13 ALA 13 21 21 ALA ALA E . n E 1 14 GLU 14 22 22 GLU GLU E . n E 1 15 ASP 15 23 23 ASP ASP E . n E 1 16 VAL 16 24 24 VAL VAL E . n E 1 17 GLY 17 25 25 GLY GLY E . n E 1 18 SER 18 26 26 SER SER E . n E 1 19 ASN 19 27 27 ASN ASN E . n E 1 20 LYS 20 28 28 LYS LYS E . n E 1 21 GLY 21 29 29 GLY GLY E . n E 1 22 ALA 22 30 30 ALA ALA E . n E 1 23 ILE 23 31 31 ILE ILE E . n E 1 24 ILE 24 32 32 ILE ILE E . n E 1 25 GLY 25 33 33 GLY GLY E . n E 1 26 LEU 26 34 34 LEU LEU E . n E 1 27 MET 27 35 35 MET MET E . n E 1 28 VAL 28 36 36 VAL VAL E . n E 1 29 GLY 29 37 37 GLY GLY E . n E 1 30 GLY 30 38 38 GLY GLY E . n E 1 31 VAL 31 39 39 VAL VAL E . n E 1 32 VAL 32 40 40 VAL VAL E . n E 1 33 ILE 33 41 41 ILE ILE E . n E 1 34 ALA 34 42 42 ALA ALA E . n F 1 1 GLY 1 9 9 GLY GLY F . n F 1 2 TYR 2 10 10 TYR TYR F . n F 1 3 GLU 3 11 11 GLU GLU F . n F 1 4 VAL 4 12 12 VAL VAL F . n F 1 5 HIS 5 13 13 HIS HIS F . n F 1 6 HIS 6 14 14 HIS HIS F . n F 1 7 GLN 7 15 15 GLN GLN F . n F 1 8 LYS 8 16 16 LYS LYS F . n F 1 9 LEU 9 17 17 LEU LEU F . n F 1 10 VAL 10 18 18 VAL VAL F . n F 1 11 PHE 11 19 19 PHE PHE F . n F 1 12 PHE 12 20 20 PHE PHE F . n F 1 13 ALA 13 21 21 ALA ALA F . n F 1 14 GLU 14 22 22 GLU GLU F . n F 1 15 ASP 15 23 23 ASP ASP F . n F 1 16 VAL 16 24 24 VAL VAL F . n F 1 17 GLY 17 25 25 GLY GLY F . n F 1 18 SER 18 26 26 SER SER F . n F 1 19 ASN 19 27 27 ASN ASN F . n F 1 20 LYS 20 28 28 LYS LYS F . n F 1 21 GLY 21 29 29 GLY GLY F . n F 1 22 ALA 22 30 30 ALA ALA F . n F 1 23 ILE 23 31 31 ILE ILE F . n F 1 24 ILE 24 32 32 ILE ILE F . n F 1 25 GLY 25 33 33 GLY GLY F . n F 1 26 LEU 26 34 34 LEU LEU F . n F 1 27 MET 27 35 35 MET MET F . n F 1 28 VAL 28 36 36 VAL VAL F . n F 1 29 GLY 29 37 37 GLY GLY F . n F 1 30 GLY 30 38 38 GLY GLY F . n F 1 31 VAL 31 39 39 VAL VAL F . n F 1 32 VAL 32 40 40 VAL VAL F . n F 1 33 ILE 33 41 41 ILE ILE F . n F 1 34 ALA 34 42 42 ALA ALA F . n G 1 1 GLY 1 9 9 GLY GLY G . n G 1 2 TYR 2 10 10 TYR TYR G . n G 1 3 GLU 3 11 11 GLU GLU G . n G 1 4 VAL 4 12 12 VAL VAL G . n G 1 5 HIS 5 13 13 HIS HIS G . n G 1 6 HIS 6 14 14 HIS HIS G . n G 1 7 GLN 7 15 15 GLN GLN G . n G 1 8 LYS 8 16 16 LYS LYS G . n G 1 9 LEU 9 17 17 LEU LEU G . n G 1 10 VAL 10 18 18 VAL VAL G . n G 1 11 PHE 11 19 19 PHE PHE G . n G 1 12 PHE 12 20 20 PHE PHE G . n G 1 13 ALA 13 21 21 ALA ALA G . n G 1 14 GLU 14 22 22 GLU GLU G . n G 1 15 ASP 15 23 23 ASP ASP G . n G 1 16 VAL 16 24 24 VAL VAL G . n G 1 17 GLY 17 25 25 GLY GLY G . n G 1 18 SER 18 26 26 SER SER G . n G 1 19 ASN 19 27 27 ASN ASN G . n G 1 20 LYS 20 28 28 LYS LYS G . n G 1 21 GLY 21 29 29 GLY GLY G . n G 1 22 ALA 22 30 30 ALA ALA G . n G 1 23 ILE 23 31 31 ILE ILE G . n G 1 24 ILE 24 32 32 ILE ILE G . n G 1 25 GLY 25 33 33 GLY GLY G . n G 1 26 LEU 26 34 34 LEU LEU G . n G 1 27 MET 27 35 35 MET MET G . n G 1 28 VAL 28 36 36 VAL VAL G . n G 1 29 GLY 29 37 37 GLY GLY G . n G 1 30 GLY 30 38 38 GLY GLY G . n G 1 31 VAL 31 39 39 VAL VAL G . n G 1 32 VAL 32 40 40 VAL VAL G . n G 1 33 ILE 33 41 41 ILE ILE G . n G 1 34 ALA 34 42 42 ALA ALA G . n H 1 1 GLY 1 9 9 GLY GLY H . n H 1 2 TYR 2 10 10 TYR TYR H . n H 1 3 GLU 3 11 11 GLU GLU H . n H 1 4 VAL 4 12 12 VAL VAL H . n H 1 5 HIS 5 13 13 HIS HIS H . n H 1 6 HIS 6 14 14 HIS HIS H . n H 1 7 GLN 7 15 15 GLN GLN H . n H 1 8 LYS 8 16 16 LYS LYS H . n H 1 9 LEU 9 17 17 LEU LEU H . n H 1 10 VAL 10 18 18 VAL VAL H . n H 1 11 PHE 11 19 19 PHE PHE H . n H 1 12 PHE 12 20 20 PHE PHE H . n H 1 13 ALA 13 21 21 ALA ALA H . n H 1 14 GLU 14 22 22 GLU GLU H . n H 1 15 ASP 15 23 23 ASP ASP H . n H 1 16 VAL 16 24 24 VAL VAL H . n H 1 17 GLY 17 25 25 GLY GLY H . n H 1 18 SER 18 26 26 SER SER H . n H 1 19 ASN 19 27 27 ASN ASN H . n H 1 20 LYS 20 28 28 LYS LYS H . n H 1 21 GLY 21 29 29 GLY GLY H . n H 1 22 ALA 22 30 30 ALA ALA H . n H 1 23 ILE 23 31 31 ILE ILE H . n H 1 24 ILE 24 32 32 ILE ILE H . n H 1 25 GLY 25 33 33 GLY GLY H . n H 1 26 LEU 26 34 34 LEU LEU H . n H 1 27 MET 27 35 35 MET MET H . n H 1 28 VAL 28 36 36 VAL VAL H . n H 1 29 GLY 29 37 37 GLY GLY H . n H 1 30 GLY 30 38 38 GLY GLY H . n H 1 31 VAL 31 39 39 VAL VAL H . n H 1 32 VAL 32 40 40 VAL VAL H . n H 1 33 ILE 33 41 41 ILE ILE H . n H 1 34 ALA 34 42 42 ALA ALA H . n I 1 1 GLY 1 9 9 GLY GLY I . n I 1 2 TYR 2 10 10 TYR TYR I . n I 1 3 GLU 3 11 11 GLU GLU I . n I 1 4 VAL 4 12 12 VAL VAL I . n I 1 5 HIS 5 13 13 HIS HIS I . n I 1 6 HIS 6 14 14 HIS HIS I . n I 1 7 GLN 7 15 15 GLN GLN I . n I 1 8 LYS 8 16 16 LYS LYS I . n I 1 9 LEU 9 17 17 LEU LEU I . n I 1 10 VAL 10 18 18 VAL VAL I . n I 1 11 PHE 11 19 19 PHE PHE I . n I 1 12 PHE 12 20 20 PHE PHE I . n I 1 13 ALA 13 21 21 ALA ALA I . n I 1 14 GLU 14 22 22 GLU GLU I . n I 1 15 ASP 15 23 23 ASP ASP I . n I 1 16 VAL 16 24 24 VAL VAL I . n I 1 17 GLY 17 25 25 GLY GLY I . n I 1 18 SER 18 26 26 SER SER I . n I 1 19 ASN 19 27 27 ASN ASN I . n I 1 20 LYS 20 28 28 LYS LYS I . n I 1 21 GLY 21 29 29 GLY GLY I . n I 1 22 ALA 22 30 30 ALA ALA I . n I 1 23 ILE 23 31 31 ILE ILE I . n I 1 24 ILE 24 32 32 ILE ILE I . n I 1 25 GLY 25 33 33 GLY GLY I . n I 1 26 LEU 26 34 34 LEU LEU I . n I 1 27 MET 27 35 35 MET MET I . n I 1 28 VAL 28 36 36 VAL VAL I . n I 1 29 GLY 29 37 37 GLY GLY I . n I 1 30 GLY 30 38 38 GLY GLY I . n I 1 31 VAL 31 39 39 VAL VAL I . n I 1 32 VAL 32 40 40 VAL VAL I . n I 1 33 ILE 33 41 41 ILE ILE I . n I 1 34 ALA 34 42 42 ALA ALA I . n J 1 1 GLY 1 9 9 GLY GLY J . n J 1 2 TYR 2 10 10 TYR TYR J . n J 1 3 GLU 3 11 11 GLU GLU J . n J 1 4 VAL 4 12 12 VAL VAL J . n J 1 5 HIS 5 13 13 HIS HIS J . n J 1 6 HIS 6 14 14 HIS HIS J . n J 1 7 GLN 7 15 15 GLN GLN J . n J 1 8 LYS 8 16 16 LYS LYS J . n J 1 9 LEU 9 17 17 LEU LEU J . n J 1 10 VAL 10 18 18 VAL VAL J . n J 1 11 PHE 11 19 19 PHE PHE J . n J 1 12 PHE 12 20 20 PHE PHE J . n J 1 13 ALA 13 21 21 ALA ALA J . n J 1 14 GLU 14 22 22 GLU GLU J . n J 1 15 ASP 15 23 23 ASP ASP J . n J 1 16 VAL 16 24 24 VAL VAL J . n J 1 17 GLY 17 25 25 GLY GLY J . n J 1 18 SER 18 26 26 SER SER J . n J 1 19 ASN 19 27 27 ASN ASN J . n J 1 20 LYS 20 28 28 LYS LYS J . n J 1 21 GLY 21 29 29 GLY GLY J . n J 1 22 ALA 22 30 30 ALA ALA J . n J 1 23 ILE 23 31 31 ILE ILE J . n J 1 24 ILE 24 32 32 ILE ILE J . n J 1 25 GLY 25 33 33 GLY GLY J . n J 1 26 LEU 26 34 34 LEU LEU J . n J 1 27 MET 27 35 35 MET MET J . n J 1 28 VAL 28 36 36 VAL VAL J . n J 1 29 GLY 29 37 37 GLY GLY J . n J 1 30 GLY 30 38 38 GLY GLY J . n J 1 31 VAL 31 39 39 VAL VAL J . n J 1 32 VAL 32 40 40 VAL VAL J . n J 1 33 ILE 33 41 41 ILE ILE J . n J 1 34 ALA 34 42 42 ALA ALA J . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8SEJ _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8SEJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8SEJ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8SEJ _struct.title 'Type I beta-amyloid 42 Filaments from Down syndrome' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8SEJ _struct_keywords.text 'Beta Amyloid filaments, Down Syndrome, NEUROPEPTIDE, Human Trisomy 21' _struct_keywords.pdbx_keywords NEUROPEPTIDE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A4_HUMAN _struct_ref.pdbx_db_accession P05067 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA _struct_ref.pdbx_align_begin 680 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8SEJ A 1 ? 34 ? P05067 680 ? 713 ? 9 42 2 1 8SEJ B 1 ? 34 ? P05067 680 ? 713 ? 9 42 3 1 8SEJ C 1 ? 34 ? P05067 680 ? 713 ? 9 42 4 1 8SEJ D 1 ? 34 ? P05067 680 ? 713 ? 9 42 5 1 8SEJ E 1 ? 34 ? P05067 680 ? 713 ? 9 42 6 1 8SEJ F 1 ? 34 ? P05067 680 ? 713 ? 9 42 7 1 8SEJ G 1 ? 34 ? P05067 680 ? 713 ? 9 42 8 1 8SEJ H 1 ? 34 ? P05067 680 ? 713 ? 9 42 9 1 8SEJ I 1 ? 34 ? P05067 680 ? 713 ? 9 42 10 1 8SEJ J 1 ? 34 ? P05067 680 ? 713 ? 9 42 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? AA3 ? 5 ? AA4 ? 5 ? AA5 ? 5 ? AA6 ? 5 ? AA7 ? 5 ? AA8 ? 5 ? AA9 ? 5 ? AB1 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA3 4 5 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA4 3 4 ? parallel AA4 4 5 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA5 3 4 ? parallel AA5 4 5 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA6 3 4 ? parallel AA6 4 5 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA7 3 4 ? parallel AA7 4 5 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA8 3 4 ? parallel AA8 4 5 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AA9 3 4 ? parallel AA9 4 5 ? parallel AB1 1 2 ? parallel AB1 2 3 ? parallel AB1 3 4 ? parallel AB1 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR A 2 ? HIS A 5 ? TYR A 10 HIS A 13 AA1 2 TYR C 2 ? HIS C 5 ? TYR C 10 HIS C 13 AA1 3 TYR E 2 ? HIS E 5 ? TYR E 10 HIS E 13 AA1 4 TYR G 2 ? HIS G 5 ? TYR G 10 HIS G 13 AA1 5 TYR I 2 ? HIS I 5 ? TYR I 10 HIS I 13 AA2 1 LYS A 8 ? PHE A 12 ? LYS A 16 PHE A 20 AA2 2 LYS C 8 ? PHE C 12 ? LYS C 16 PHE C 20 AA2 3 LYS E 8 ? PHE E 12 ? LYS E 16 PHE E 20 AA2 4 LYS G 8 ? PHE G 12 ? LYS G 16 PHE G 20 AA2 5 LYS I 8 ? PHE I 12 ? LYS I 16 PHE I 20 AA3 1 VAL A 16 ? GLY A 17 ? VAL A 24 GLY A 25 AA3 2 VAL C 16 ? GLY C 17 ? VAL C 24 GLY C 25 AA3 3 VAL E 16 ? GLY E 17 ? VAL E 24 GLY E 25 AA3 4 VAL G 16 ? GLY G 17 ? VAL G 24 GLY G 25 AA3 5 VAL I 16 ? GLY I 17 ? VAL I 24 GLY I 25 AA4 1 ALA A 22 ? VAL A 28 ? ALA A 30 VAL A 36 AA4 2 ALA C 22 ? VAL C 28 ? ALA C 30 VAL C 36 AA4 3 ALA E 22 ? VAL E 28 ? ALA E 30 VAL E 36 AA4 4 ALA G 22 ? VAL G 28 ? ALA G 30 VAL G 36 AA4 5 ALA I 22 ? VAL I 28 ? ALA I 30 VAL I 36 AA5 1 VAL A 31 ? ILE A 33 ? VAL A 39 ILE A 41 AA5 2 VAL C 31 ? ILE C 33 ? VAL C 39 ILE C 41 AA5 3 VAL E 31 ? ILE E 33 ? VAL E 39 ILE E 41 AA5 4 VAL G 31 ? ILE G 33 ? VAL G 39 ILE G 41 AA5 5 VAL I 31 ? ILE I 33 ? VAL I 39 ILE I 41 AA6 1 TYR B 2 ? HIS B 5 ? TYR B 10 HIS B 13 AA6 2 TYR D 2 ? HIS D 5 ? TYR D 10 HIS D 13 AA6 3 TYR F 2 ? HIS F 5 ? TYR F 10 HIS F 13 AA6 4 TYR H 2 ? HIS H 5 ? TYR H 10 HIS H 13 AA6 5 TYR J 2 ? HIS J 5 ? TYR J 10 HIS J 13 AA7 1 LYS B 8 ? PHE B 12 ? LYS B 16 PHE B 20 AA7 2 LYS D 8 ? PHE D 12 ? LYS D 16 PHE D 20 AA7 3 LYS F 8 ? PHE F 12 ? LYS F 16 PHE F 20 AA7 4 LYS H 8 ? PHE H 12 ? LYS H 16 PHE H 20 AA7 5 LYS J 8 ? PHE J 12 ? LYS J 16 PHE J 20 AA8 1 VAL B 16 ? GLY B 17 ? VAL B 24 GLY B 25 AA8 2 VAL D 16 ? GLY D 17 ? VAL D 24 GLY D 25 AA8 3 VAL F 16 ? GLY F 17 ? VAL F 24 GLY F 25 AA8 4 VAL H 16 ? GLY H 17 ? VAL H 24 GLY H 25 AA8 5 VAL J 16 ? GLY J 17 ? VAL J 24 GLY J 25 AA9 1 ALA B 22 ? VAL B 28 ? ALA B 30 VAL B 36 AA9 2 ALA D 22 ? VAL D 28 ? ALA D 30 VAL D 36 AA9 3 ALA F 22 ? VAL F 28 ? ALA F 30 VAL F 36 AA9 4 ALA H 22 ? VAL H 28 ? ALA H 30 VAL H 36 AA9 5 ALA J 22 ? VAL J 28 ? ALA J 30 VAL J 36 AB1 1 VAL B 31 ? ILE B 33 ? VAL B 39 ILE B 41 AB1 2 VAL D 31 ? ILE D 33 ? VAL D 39 ILE D 41 AB1 3 VAL F 31 ? ILE F 33 ? VAL F 39 ILE F 41 AB1 4 VAL H 31 ? ILE H 33 ? VAL H 39 ILE H 41 AB1 5 VAL J 31 ? ILE J 33 ? VAL J 39 ILE J 41 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 4 ? N VAL A 12 O HIS C 5 ? O HIS C 13 AA1 2 3 N VAL C 4 ? N VAL C 12 O HIS E 5 ? O HIS E 13 AA1 3 4 N VAL E 4 ? N VAL E 12 O HIS G 5 ? O HIS G 13 AA1 4 5 N VAL G 4 ? N VAL G 12 O HIS I 5 ? O HIS I 13 AA2 1 2 N PHE A 12 ? N PHE A 20 O PHE C 11 ? O PHE C 19 AA2 2 3 N PHE C 12 ? N PHE C 20 O PHE E 11 ? O PHE E 19 AA2 3 4 N PHE E 12 ? N PHE E 20 O PHE G 11 ? O PHE G 19 AA2 4 5 N PHE G 12 ? N PHE G 20 O PHE I 11 ? O PHE I 19 AA3 1 2 N VAL A 16 ? N VAL A 24 O GLY C 17 ? O GLY C 25 AA3 2 3 N VAL C 16 ? N VAL C 24 O GLY E 17 ? O GLY E 25 AA3 3 4 N VAL E 16 ? N VAL E 24 O GLY G 17 ? O GLY G 25 AA3 4 5 N VAL G 16 ? N VAL G 24 O GLY I 17 ? O GLY I 25 AA4 1 2 N LEU A 26 ? N LEU A 34 O MET C 27 ? O MET C 35 AA4 2 3 N LEU C 26 ? N LEU C 34 O MET E 27 ? O MET E 35 AA4 3 4 N LEU E 26 ? N LEU E 34 O MET G 27 ? O MET G 35 AA4 4 5 N LEU G 26 ? N LEU G 34 O MET I 27 ? O MET I 35 AA5 1 2 N ILE A 33 ? N ILE A 41 O VAL C 32 ? O VAL C 40 AA5 2 3 N ILE C 33 ? N ILE C 41 O VAL E 32 ? O VAL E 40 AA5 3 4 N ILE E 33 ? N ILE E 41 O VAL G 32 ? O VAL G 40 AA5 4 5 N ILE G 33 ? N ILE G 41 O VAL I 32 ? O VAL I 40 AA6 1 2 N VAL B 4 ? N VAL B 12 O HIS D 5 ? O HIS D 13 AA6 2 3 N VAL D 4 ? N VAL D 12 O HIS F 5 ? O HIS F 13 AA6 3 4 N VAL F 4 ? N VAL F 12 O HIS H 5 ? O HIS H 13 AA6 4 5 N VAL H 4 ? N VAL H 12 O HIS J 5 ? O HIS J 13 AA7 1 2 N PHE B 12 ? N PHE B 20 O PHE D 11 ? O PHE D 19 AA7 2 3 N PHE D 12 ? N PHE D 20 O PHE F 11 ? O PHE F 19 AA7 3 4 N PHE F 12 ? N PHE F 20 O PHE H 11 ? O PHE H 19 AA7 4 5 N PHE H 12 ? N PHE H 20 O PHE J 11 ? O PHE J 19 AA8 1 2 N VAL B 16 ? N VAL B 24 O GLY D 17 ? O GLY D 25 AA8 2 3 N VAL D 16 ? N VAL D 24 O GLY F 17 ? O GLY F 25 AA8 3 4 N VAL F 16 ? N VAL F 24 O GLY H 17 ? O GLY H 25 AA8 4 5 N VAL H 16 ? N VAL H 24 O GLY J 17 ? O GLY J 25 AA9 1 2 N LEU B 26 ? N LEU B 34 O MET D 27 ? O MET D 35 AA9 2 3 N LEU D 26 ? N LEU D 34 O MET F 27 ? O MET F 35 AA9 3 4 N LEU F 26 ? N LEU F 34 O MET H 27 ? O MET H 35 AA9 4 5 N LEU H 26 ? N LEU H 34 O MET J 27 ? O MET J 35 AB1 1 2 N ILE B 33 ? N ILE B 41 O VAL D 32 ? O VAL D 40 AB1 2 3 N ILE D 33 ? N ILE D 41 O VAL F 32 ? O VAL F 40 AB1 3 4 N ILE F 33 ? N ILE F 41 O VAL H 32 ? O VAL H 40 AB1 4 5 N ILE H 33 ? N ILE H 41 O VAL J 32 ? O VAL J 40 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A ASN 27 ? ? CG A ASN 27 ? ? 1.294 1.506 -0.212 0.023 N 2 1 CB A VAL 40 ? ? CG2 A VAL 40 ? ? 1.389 1.524 -0.135 0.021 N 3 1 CB B ASN 27 ? ? CG B ASN 27 ? ? 1.294 1.506 -0.212 0.023 N 4 1 CB B VAL 40 ? ? CG2 B VAL 40 ? ? 1.389 1.524 -0.135 0.021 N 5 1 CB C ASN 27 ? ? CG C ASN 27 ? ? 1.293 1.506 -0.213 0.023 N 6 1 CB C VAL 40 ? ? CG2 C VAL 40 ? ? 1.389 1.524 -0.135 0.021 N 7 1 CB D ASN 27 ? ? CG D ASN 27 ? ? 1.293 1.506 -0.213 0.023 N 8 1 CB D VAL 40 ? ? CG2 D VAL 40 ? ? 1.388 1.524 -0.136 0.021 N 9 1 CB E ASN 27 ? ? CG E ASN 27 ? ? 1.293 1.506 -0.213 0.023 N 10 1 CB E VAL 40 ? ? CG2 E VAL 40 ? ? 1.389 1.524 -0.135 0.021 N 11 1 CB F ASN 27 ? ? CG F ASN 27 ? ? 1.293 1.506 -0.213 0.023 N 12 1 CB F VAL 40 ? ? CG2 F VAL 40 ? ? 1.389 1.524 -0.135 0.021 N 13 1 CB G ASN 27 ? ? CG G ASN 27 ? ? 1.293 1.506 -0.213 0.023 N 14 1 CB G VAL 40 ? ? CG2 G VAL 40 ? ? 1.389 1.524 -0.135 0.021 N 15 1 CB H ASN 27 ? ? CG H ASN 27 ? ? 1.294 1.506 -0.212 0.023 N 16 1 CB H VAL 40 ? ? CG2 H VAL 40 ? ? 1.389 1.524 -0.135 0.021 N 17 1 CB I ASN 27 ? ? CG I ASN 27 ? ? 1.294 1.506 -0.212 0.023 N 18 1 CB I VAL 40 ? ? CG2 I VAL 40 ? ? 1.390 1.524 -0.134 0.021 N 19 1 CB J ASN 27 ? ? CG J ASN 27 ? ? 1.293 1.506 -0.213 0.023 N 20 1 CB J VAL 40 ? ? CG2 J VAL 40 ? ? 1.388 1.524 -0.136 0.021 N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8SEJ _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8SEJ _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.17 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 45575 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.2 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type TISSUE _em_entity_assembly.name 'Type I beta amyloid 42' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8SEJ _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'SPOT SCAN' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 5000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 81000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 100 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_vitrification.entry_id 8SEJ _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8SEJ _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 GLN N N N N 47 GLN CA C N S 48 GLN C C N N 49 GLN O O N N 50 GLN CB C N N 51 GLN CG C N N 52 GLN CD C N N 53 GLN OE1 O N N 54 GLN NE2 N N N 55 GLN OXT O N N 56 GLN H H N N 57 GLN H2 H N N 58 GLN HA H N N 59 GLN HB2 H N N 60 GLN HB3 H N N 61 GLN HG2 H N N 62 GLN HG3 H N N 63 GLN HE21 H N N 64 GLN HE22 H N N 65 GLN HXT H N N 66 GLU N N N N 67 GLU CA C N S 68 GLU C C N N 69 GLU O O N N 70 GLU CB C N N 71 GLU CG C N N 72 GLU CD C N N 73 GLU OE1 O N N 74 GLU OE2 O N N 75 GLU OXT O N N 76 GLU H H N N 77 GLU H2 H N N 78 GLU HA H N N 79 GLU HB2 H N N 80 GLU HB3 H N N 81 GLU HG2 H N N 82 GLU HG3 H N N 83 GLU HE2 H N N 84 GLU HXT H N N 85 GLY N N N N 86 GLY CA C N N 87 GLY C C N N 88 GLY O O N N 89 GLY OXT O N N 90 GLY H H N N 91 GLY H2 H N N 92 GLY HA2 H N N 93 GLY HA3 H N N 94 GLY HXT H N N 95 HIS N N N N 96 HIS CA C N S 97 HIS C C N N 98 HIS O O N N 99 HIS CB C N N 100 HIS CG C Y N 101 HIS ND1 N Y N 102 HIS CD2 C Y N 103 HIS CE1 C Y N 104 HIS NE2 N Y N 105 HIS OXT O N N 106 HIS H H N N 107 HIS H2 H N N 108 HIS HA H N N 109 HIS HB2 H N N 110 HIS HB3 H N N 111 HIS HD1 H N N 112 HIS HD2 H N N 113 HIS HE1 H N N 114 HIS HE2 H N N 115 HIS HXT H N N 116 ILE N N N N 117 ILE CA C N S 118 ILE C C N N 119 ILE O O N N 120 ILE CB C N S 121 ILE CG1 C N N 122 ILE CG2 C N N 123 ILE CD1 C N N 124 ILE OXT O N N 125 ILE H H N N 126 ILE H2 H N N 127 ILE HA H N N 128 ILE HB H N N 129 ILE HG12 H N N 130 ILE HG13 H N N 131 ILE HG21 H N N 132 ILE HG22 H N N 133 ILE HG23 H N N 134 ILE HD11 H N N 135 ILE HD12 H N N 136 ILE HD13 H N N 137 ILE HXT H N N 138 LEU N N N N 139 LEU CA C N S 140 LEU C C N N 141 LEU O O N N 142 LEU CB C N N 143 LEU CG C N N 144 LEU CD1 C N N 145 LEU CD2 C N N 146 LEU OXT O N N 147 LEU H H N N 148 LEU H2 H N N 149 LEU HA H N N 150 LEU HB2 H N N 151 LEU HB3 H N N 152 LEU HG H N N 153 LEU HD11 H N N 154 LEU HD12 H N N 155 LEU HD13 H N N 156 LEU HD21 H N N 157 LEU HD22 H N N 158 LEU HD23 H N N 159 LEU HXT H N N 160 LYS N N N N 161 LYS CA C N S 162 LYS C C N N 163 LYS O O N N 164 LYS CB C N N 165 LYS CG C N N 166 LYS CD C N N 167 LYS CE C N N 168 LYS NZ N N N 169 LYS OXT O N N 170 LYS H H N N 171 LYS H2 H N N 172 LYS HA H N N 173 LYS HB2 H N N 174 LYS HB3 H N N 175 LYS HG2 H N N 176 LYS HG3 H N N 177 LYS HD2 H N N 178 LYS HD3 H N N 179 LYS HE2 H N N 180 LYS HE3 H N N 181 LYS HZ1 H N N 182 LYS HZ2 H N N 183 LYS HZ3 H N N 184 LYS HXT H N N 185 MET N N N N 186 MET CA C N S 187 MET C C N N 188 MET O O N N 189 MET CB C N N 190 MET CG C N N 191 MET SD S N N 192 MET CE C N N 193 MET OXT O N N 194 MET H H N N 195 MET H2 H N N 196 MET HA H N N 197 MET HB2 H N N 198 MET HB3 H N N 199 MET HG2 H N N 200 MET HG3 H N N 201 MET HE1 H N N 202 MET HE2 H N N 203 MET HE3 H N N 204 MET HXT H N N 205 PHE N N N N 206 PHE CA C N S 207 PHE C C N N 208 PHE O O N N 209 PHE CB C N N 210 PHE CG C Y N 211 PHE CD1 C Y N 212 PHE CD2 C Y N 213 PHE CE1 C Y N 214 PHE CE2 C Y N 215 PHE CZ C Y N 216 PHE OXT O N N 217 PHE H H N N 218 PHE H2 H N N 219 PHE HA H N N 220 PHE HB2 H N N 221 PHE HB3 H N N 222 PHE HD1 H N N 223 PHE HD2 H N N 224 PHE HE1 H N N 225 PHE HE2 H N N 226 PHE HZ H N N 227 PHE HXT H N N 228 SER N N N N 229 SER CA C N S 230 SER C C N N 231 SER O O N N 232 SER CB C N N 233 SER OG O N N 234 SER OXT O N N 235 SER H H N N 236 SER H2 H N N 237 SER HA H N N 238 SER HB2 H N N 239 SER HB3 H N N 240 SER HG H N N 241 SER HXT H N N 242 TYR N N N N 243 TYR CA C N S 244 TYR C C N N 245 TYR O O N N 246 TYR CB C N N 247 TYR CG C Y N 248 TYR CD1 C Y N 249 TYR CD2 C Y N 250 TYR CE1 C Y N 251 TYR CE2 C Y N 252 TYR CZ C Y N 253 TYR OH O N N 254 TYR OXT O N N 255 TYR H H N N 256 TYR H2 H N N 257 TYR HA H N N 258 TYR HB2 H N N 259 TYR HB3 H N N 260 TYR HD1 H N N 261 TYR HD2 H N N 262 TYR HE1 H N N 263 TYR HE2 H N N 264 TYR HH H N N 265 TYR HXT H N N 266 VAL N N N N 267 VAL CA C N S 268 VAL C C N N 269 VAL O O N N 270 VAL CB C N N 271 VAL CG1 C N N 272 VAL CG2 C N N 273 VAL OXT O N N 274 VAL H H N N 275 VAL H2 H N N 276 VAL HA H N N 277 VAL HB H N N 278 VAL HG11 H N N 279 VAL HG12 H N N 280 VAL HG13 H N N 281 VAL HG21 H N N 282 VAL HG22 H N N 283 VAL HG23 H N N 284 VAL HXT H N N 285 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 GLN N CA sing N N 44 GLN N H sing N N 45 GLN N H2 sing N N 46 GLN CA C sing N N 47 GLN CA CB sing N N 48 GLN CA HA sing N N 49 GLN C O doub N N 50 GLN C OXT sing N N 51 GLN CB CG sing N N 52 GLN CB HB2 sing N N 53 GLN CB HB3 sing N N 54 GLN CG CD sing N N 55 GLN CG HG2 sing N N 56 GLN CG HG3 sing N N 57 GLN CD OE1 doub N N 58 GLN CD NE2 sing N N 59 GLN NE2 HE21 sing N N 60 GLN NE2 HE22 sing N N 61 GLN OXT HXT sing N N 62 GLU N CA sing N N 63 GLU N H sing N N 64 GLU N H2 sing N N 65 GLU CA C sing N N 66 GLU CA CB sing N N 67 GLU CA HA sing N N 68 GLU C O doub N N 69 GLU C OXT sing N N 70 GLU CB CG sing N N 71 GLU CB HB2 sing N N 72 GLU CB HB3 sing N N 73 GLU CG CD sing N N 74 GLU CG HG2 sing N N 75 GLU CG HG3 sing N N 76 GLU CD OE1 doub N N 77 GLU CD OE2 sing N N 78 GLU OE2 HE2 sing N N 79 GLU OXT HXT sing N N 80 GLY N CA sing N N 81 GLY N H sing N N 82 GLY N H2 sing N N 83 GLY CA C sing N N 84 GLY CA HA2 sing N N 85 GLY CA HA3 sing N N 86 GLY C O doub N N 87 GLY C OXT sing N N 88 GLY OXT HXT sing N N 89 HIS N CA sing N N 90 HIS N H sing N N 91 HIS N H2 sing N N 92 HIS CA C sing N N 93 HIS CA CB sing N N 94 HIS CA HA sing N N 95 HIS C O doub N N 96 HIS C OXT sing N N 97 HIS CB CG sing N N 98 HIS CB HB2 sing N N 99 HIS CB HB3 sing N N 100 HIS CG ND1 sing Y N 101 HIS CG CD2 doub Y N 102 HIS ND1 CE1 doub Y N 103 HIS ND1 HD1 sing N N 104 HIS CD2 NE2 sing Y N 105 HIS CD2 HD2 sing N N 106 HIS CE1 NE2 sing Y N 107 HIS CE1 HE1 sing N N 108 HIS NE2 HE2 sing N N 109 HIS OXT HXT sing N N 110 ILE N CA sing N N 111 ILE N H sing N N 112 ILE N H2 sing N N 113 ILE CA C sing N N 114 ILE CA CB sing N N 115 ILE CA HA sing N N 116 ILE C O doub N N 117 ILE C OXT sing N N 118 ILE CB CG1 sing N N 119 ILE CB CG2 sing N N 120 ILE CB HB sing N N 121 ILE CG1 CD1 sing N N 122 ILE CG1 HG12 sing N N 123 ILE CG1 HG13 sing N N 124 ILE CG2 HG21 sing N N 125 ILE CG2 HG22 sing N N 126 ILE CG2 HG23 sing N N 127 ILE CD1 HD11 sing N N 128 ILE CD1 HD12 sing N N 129 ILE CD1 HD13 sing N N 130 ILE OXT HXT sing N N 131 LEU N CA sing N N 132 LEU N H sing N N 133 LEU N H2 sing N N 134 LEU CA C sing N N 135 LEU CA CB sing N N 136 LEU CA HA sing N N 137 LEU C O doub N N 138 LEU C OXT sing N N 139 LEU CB CG sing N N 140 LEU CB HB2 sing N N 141 LEU CB HB3 sing N N 142 LEU CG CD1 sing N N 143 LEU CG CD2 sing N N 144 LEU CG HG sing N N 145 LEU CD1 HD11 sing N N 146 LEU CD1 HD12 sing N N 147 LEU CD1 HD13 sing N N 148 LEU CD2 HD21 sing N N 149 LEU CD2 HD22 sing N N 150 LEU CD2 HD23 sing N N 151 LEU OXT HXT sing N N 152 LYS N CA sing N N 153 LYS N H sing N N 154 LYS N H2 sing N N 155 LYS CA C sing N N 156 LYS CA CB sing N N 157 LYS CA HA sing N N 158 LYS C O doub N N 159 LYS C OXT sing N N 160 LYS CB CG sing N N 161 LYS CB HB2 sing N N 162 LYS CB HB3 sing N N 163 LYS CG CD sing N N 164 LYS CG HG2 sing N N 165 LYS CG HG3 sing N N 166 LYS CD CE sing N N 167 LYS CD HD2 sing N N 168 LYS CD HD3 sing N N 169 LYS CE NZ sing N N 170 LYS CE HE2 sing N N 171 LYS CE HE3 sing N N 172 LYS NZ HZ1 sing N N 173 LYS NZ HZ2 sing N N 174 LYS NZ HZ3 sing N N 175 LYS OXT HXT sing N N 176 MET N CA sing N N 177 MET N H sing N N 178 MET N H2 sing N N 179 MET CA C sing N N 180 MET CA CB sing N N 181 MET CA HA sing N N 182 MET C O doub N N 183 MET C OXT sing N N 184 MET CB CG sing N N 185 MET CB HB2 sing N N 186 MET CB HB3 sing N N 187 MET CG SD sing N N 188 MET CG HG2 sing N N 189 MET CG HG3 sing N N 190 MET SD CE sing N N 191 MET CE HE1 sing N N 192 MET CE HE2 sing N N 193 MET CE HE3 sing N N 194 MET OXT HXT sing N N 195 PHE N CA sing N N 196 PHE N H sing N N 197 PHE N H2 sing N N 198 PHE CA C sing N N 199 PHE CA CB sing N N 200 PHE CA HA sing N N 201 PHE C O doub N N 202 PHE C OXT sing N N 203 PHE CB CG sing N N 204 PHE CB HB2 sing N N 205 PHE CB HB3 sing N N 206 PHE CG CD1 doub Y N 207 PHE CG CD2 sing Y N 208 PHE CD1 CE1 sing Y N 209 PHE CD1 HD1 sing N N 210 PHE CD2 CE2 doub Y N 211 PHE CD2 HD2 sing N N 212 PHE CE1 CZ doub Y N 213 PHE CE1 HE1 sing N N 214 PHE CE2 CZ sing Y N 215 PHE CE2 HE2 sing N N 216 PHE CZ HZ sing N N 217 PHE OXT HXT sing N N 218 SER N CA sing N N 219 SER N H sing N N 220 SER N H2 sing N N 221 SER CA C sing N N 222 SER CA CB sing N N 223 SER CA HA sing N N 224 SER C O doub N N 225 SER C OXT sing N N 226 SER CB OG sing N N 227 SER CB HB2 sing N N 228 SER CB HB3 sing N N 229 SER OG HG sing N N 230 SER OXT HXT sing N N 231 TYR N CA sing N N 232 TYR N H sing N N 233 TYR N H2 sing N N 234 TYR CA C sing N N 235 TYR CA CB sing N N 236 TYR CA HA sing N N 237 TYR C O doub N N 238 TYR C OXT sing N N 239 TYR CB CG sing N N 240 TYR CB HB2 sing N N 241 TYR CB HB3 sing N N 242 TYR CG CD1 doub Y N 243 TYR CG CD2 sing Y N 244 TYR CD1 CE1 sing Y N 245 TYR CD1 HD1 sing N N 246 TYR CD2 CE2 doub Y N 247 TYR CD2 HD2 sing N N 248 TYR CE1 CZ doub Y N 249 TYR CE1 HE1 sing N N 250 TYR CE2 CZ sing Y N 251 TYR CE2 HE2 sing N N 252 TYR CZ OH sing N N 253 TYR OH HH sing N N 254 TYR OXT HXT sing N N 255 VAL N CA sing N N 256 VAL N H sing N N 257 VAL N H2 sing N N 258 VAL CA C sing N N 259 VAL CA CB sing N N 260 VAL CA HA sing N N 261 VAL C O doub N N 262 VAL C OXT sing N N 263 VAL CB CG1 sing N N 264 VAL CB CG2 sing N N 265 VAL CB HB sing N N 266 VAL CG1 HG11 sing N N 267 VAL CG1 HG12 sing N N 268 VAL CG1 HG13 sing N N 269 VAL CG2 HG21 sing N N 270 VAL CG2 HG22 sing N N 271 VAL CG2 HG23 sing N N 272 VAL OXT HXT sing N N 273 # _em_admin.current_status REL _em_admin.deposition_date 2023-04-10 _em_admin.deposition_site RCSB _em_admin.entry_id 8SEJ _em_admin.last_update 2024-06-26 _em_admin.map_release_date 2024-04-03 _em_admin.title 'Type I beta-amyloid 42 Filaments from Down syndrome' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit 178.24 _em_helical_entity.axial_rise_per_subunit 2.38 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 1.103 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50.46 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration 1 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute on Aging (NIH/NIA)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number '5U01NS110437 and and 1RF1AG071177' _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 8SEJ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_