HEADER HYDROLASE 10-APR-23 8SFD TITLE CRYSTAL STRUCTURE OF THE ENGINEERED SSOPOX VARIANT IVB10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARYLDIALKYLPHOSPHATASE; COMPND 3 CHAIN: D; COMPND 4 SYNONYM: PARAOXONASE,SSOPOX,PHOSPHOTRIESTERASE-LIKE LACTONASE; COMPND 5 EC: 3.1.8.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROLOBUS SOLFATARICUS (STRAIN ATCC 35092 / SOURCE 3 DSM 1617 / JCM 11322 / P2); SOURCE 4 ORGANISM_TAXID: 273057; SOURCE 5 STRAIN: ATCC 35092 / DSM 1617 / JCM 11322 / P2; SOURCE 6 VARIANT: IVB10; SOURCE 7 GENE: PHP, SSO2522; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS LACTONASE, QUORUM SENSING, PHOSPHOTRIESTERASE, ARYLESTERASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.JACQUET,R.BILLOT,A.SHIMON,N.HOEKSTRA,C.BERGONZI,A.JENKS,D.DAUDE, AUTHOR 2 M.H.ELIAS REVDAT 1 17-APR-24 8SFD 0 JRNL AUTH P.JACQUET,R.BILLOT,A.SHIMON,N.HOEKSTRA,C.BERGONZI,A.JENKS, JRNL AUTH 2 E.CHABRIERE,D.DAUDE,M.H.ELIAS JRNL TITL CHANGES IN ACTIVE SITE LOOPS CONFORMATION RELATES TO A JRNL TITL 2 TRANSITION FROM LACTONASE TO PHOSPHOTRIESTERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 51793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2726 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3756 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 197 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2501 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 316 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.48000 REMARK 3 B22 (A**2) : -1.31000 REMARK 3 B33 (A**2) : -1.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.073 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.910 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2729 ; 0.005 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2571 ; 0.008 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3702 ; 0.846 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6026 ; 0.355 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 350 ; 6.569 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 18 ; 2.241 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 509 ;12.252 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 411 ; 0.044 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3136 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 528 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1331 ; 2.247 ; 2.162 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1331 ; 2.231 ; 2.161 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1683 ; 2.565 ; 3.236 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1684 ; 2.564 ; 3.237 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1398 ; 3.435 ; 2.635 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1399 ; 3.434 ; 2.636 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2013 ; 3.830 ; 3.781 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3277 ; 4.149 ;37.376 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3263 ; 4.088 ;35.776 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5300 ; 5.448 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8SFD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-23. REMARK 100 THE DEPOSITION ID IS D_1000273684. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03321 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54520 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 49.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.250 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 8.41 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) PEG 8000 AND TRIS-HCL BUFFER REMARK 280 (PH 8.5), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.35500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.35500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.63000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.34500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.63000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.34500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.35500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.63000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.34500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.35500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.63000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.34500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 69.35500 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 561 O HOH D 640 1.49 REMARK 500 O HOH D 711 O HOH D 756 1.68 REMARK 500 O HOH D 604 O HOH D 678 1.69 REMARK 500 O HOH D 515 O HOH D 644 1.80 REMARK 500 O HOH D 542 O HOH D 776 1.82 REMARK 500 O HOH D 508 O HOH D 677 1.84 REMARK 500 O HOH D 508 O HOH D 605 1.88 REMARK 500 OG SER D 29 O HOH D 501 1.90 REMARK 500 O HOH D 654 O HOH D 758 1.92 REMARK 500 OG SER D 314 O HOH D 502 1.99 REMARK 500 O HOH D 630 O HOH D 745 2.00 REMARK 500 O HOH D 508 O HOH D 665 2.00 REMARK 500 O HOH D 713 O HOH D 758 2.01 REMARK 500 O HOH D 620 O HOH D 755 2.04 REMARK 500 O HOH D 523 O HOH D 705 2.04 REMARK 500 O HOH D 640 O HOH D 675 2.07 REMARK 500 O HOH D 519 O HOH D 708 2.07 REMARK 500 NE2 GLN D 58 O HOH D 503 2.07 REMARK 500 O HOH D 691 O HOH D 742 2.08 REMARK 500 O HOH D 726 O HOH D 749 2.09 REMARK 500 O HOH D 730 O HOH D 731 2.09 REMARK 500 O HOH D 501 O HOH D 721 2.09 REMARK 500 ND2 ASN D 176 O HOH D 504 2.10 REMARK 500 O ARG D 277 O HOH D 505 2.11 REMARK 500 O HOH D 725 O HOH D 785 2.13 REMARK 500 O HOH D 691 O HOH D 702 2.14 REMARK 500 O HOH D 519 O HOH D 777 2.14 REMARK 500 O HOH D 712 O HOH D 777 2.15 REMARK 500 O HOH D 610 O HOH D 676 2.17 REMARK 500 O HOH D 516 O HOH D 594 2.17 REMARK 500 O HOH D 800 O HOH D 809 2.17 REMARK 500 O HOH D 700 O HOH D 721 2.18 REMARK 500 NE2 GLN D 34 O HOH D 506 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 599 O HOH D 612 3555 1.51 REMARK 500 O GLN D 35 O HOH D 599 3555 2.04 REMARK 500 O HOH D 676 O HOH D 788 7555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS D 311 CE LYS D 311 NZ 0.174 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO D 67 38.78 -89.26 REMARK 500 THR D 86 -35.52 -130.02 REMARK 500 ILE D 100 -79.02 -129.53 REMARK 500 ILE D 100 -77.16 -129.53 REMARK 500 ASP D 141 -141.32 -146.97 REMARK 500 LEU D 228 -144.19 -97.73 REMARK 500 ASP D 286 -67.09 -124.32 REMARK 500 LYS D 306 -55.34 -123.50 REMARK 500 LYS D 306 -55.22 -123.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU D 221 ASP D 222 -146.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 816 DISTANCE = 6.27 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE D 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 22 NE2 REMARK 620 2 HIS D 24 NE2 106.0 REMARK 620 3 KCX D 137 OQ1 93.2 90.5 REMARK 620 4 ASP D 256 OD1 87.1 88.1 178.6 REMARK 620 5 PO4 D 403 O3 172.8 80.5 83.6 96.2 REMARK 620 6 PO4 D 403 O2 106.5 147.5 88.6 92.6 67.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO D 402 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX D 137 OQ2 REMARK 620 2 HIS D 170 ND1 108.1 REMARK 620 3 HIS D 199 NE2 107.9 93.0 REMARK 620 4 PO4 D 403 O4 107.8 87.3 142.3 REMARK 620 5 PO4 D 403 O2 91.6 152.2 99.5 67.6 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8SF2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF VARIANT IG7 REMARK 900 RELATED ID: 8SF9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF VARIANT IG7 IN ALTERNATE STATE REMARK 900 RELATED ID: 8SFA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ENGINEERED SSOPOX VARIANT IIIC1 REMARK 900 RELATED ID: 8SFB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ENGINEERED SSOPOX VARIANT IVA4 REMARK 900 RELATED ID: 8SFC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ENGINEERED SSOPOX VARIANT IVA4 IN REMARK 900 ALTERNATE STATE DBREF 8SFD D 1 314 UNP Q97VT7 PHP_SACS2 1 314 SEQADV 8SFD ALA D 27 UNP Q97VT7 VAL 27 CONFLICT SEQADV 8SFD CYS D 72 UNP Q97VT7 LEU 72 CONFLICT SEQADV 8SFD PHE D 97 UNP Q97VT7 TYR 97 CONFLICT SEQADV 8SFD PHE D 99 UNP Q97VT7 TYR 99 CONFLICT SEQADV 8SFD LEU D 278 UNP Q97VT7 TRP 278 CONFLICT SEQRES 1 D 314 MET ARG ILE PRO LEU VAL GLY LYS ASP SER ILE GLU SER SEQRES 2 D 314 LYS ASP ILE GLY PHE THR LEU ILE HIS GLU HIS LEU ARG SEQRES 3 D 314 ALA PHE SER GLU ALA VAL ARG GLN GLN TRP PRO HIS LEU SEQRES 4 D 314 TYR ASN GLU ASP GLU GLU PHE ARG ASN ALA VAL ASN GLU SEQRES 5 D 314 VAL LYS ARG ALA MET GLN PHE GLY VAL LYS THR ILE VAL SEQRES 6 D 314 ASP PRO THR VAL MET GLY CYS GLY ARG ASP ILE ARG PHE SEQRES 7 D 314 MET GLU LYS VAL VAL LYS ALA THR GLY ILE ASN LEU VAL SEQRES 8 D 314 ALA GLY THR GLY ILE PHE ILE PHE ILE ASP LEU PRO PHE SEQRES 9 D 314 TYR PHE LEU ASN ARG SER ILE ASP GLU ILE ALA ASP LEU SEQRES 10 D 314 PHE ILE HIS ASP ILE LYS GLU GLY ILE GLN GLY THR LEU SEQRES 11 D 314 ASN LYS ALA GLY PHE VAL KCX ILE ALA ALA ASP GLU PRO SEQRES 12 D 314 GLY ILE THR LYS ASP VAL GLU LYS VAL ILE ARG ALA ALA SEQRES 13 D 314 ALA ILE ALA ASN LYS GLU THR LYS VAL PRO ILE ILE THR SEQRES 14 D 314 HIS SER ASN ALA HIS ASN ASN THR GLY LEU GLU GLN GLN SEQRES 15 D 314 ARG ILE LEU THR GLU GLU GLY VAL ASP PRO GLY LYS ILE SEQRES 16 D 314 LEU ILE GLY HIS LEU GLY ASP THR ASP ASN ILE ASP TYR SEQRES 17 D 314 ILE LYS LYS ILE ALA ASP LYS GLY SER PHE ILE GLY LEU SEQRES 18 D 314 ASP ARG TYR GLY LEU ASP LEU PHE LEU PRO VAL ASP LYS SEQRES 19 D 314 ARG ASN GLU THR THR LEU ARG LEU ILE LYS ASP GLY TYR SEQRES 20 D 314 SER ASP LYS ILE MET ILE SER HIS ASP TYR CYS CYS THR SEQRES 21 D 314 ILE ASP TRP GLY THR ALA LYS PRO GLU TYR LYS PRO LYS SEQRES 22 D 314 LEU ALA PRO ARG LEU SER ILE THR LEU ILE PHE GLU ASP SEQRES 23 D 314 THR ILE PRO PHE LEU LYS ARG ASN GLY VAL ASN GLU GLU SEQRES 24 D 314 VAL ILE ALA THR ILE PHE LYS GLU ASN PRO LYS LYS PHE SEQRES 25 D 314 PHE SER MODRES 8SFD KCX D 137 LYS MODIFIED RESIDUE HET KCX D 137 12 HET FE D 401 1 HET CO D 402 1 HET PO4 D 403 5 HET GOL D 404 6 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM FE FE (III) ION HETNAM CO COBALT (II) ION HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 FE FE 3+ FORMUL 3 CO CO 2+ FORMUL 4 PO4 O4 P 3- FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *316(H2 O) HELIX 1 AA1 GLU D 12 ILE D 16 5 5 HELIX 2 AA2 SER D 29 TRP D 36 1 8 HELIX 3 AA3 PRO D 37 TYR D 40 5 4 HELIX 4 AA4 ASN D 41 PHE D 59 1 19 HELIX 5 AA5 ASP D 75 GLY D 87 1 13 HELIX 6 AA6 PRO D 103 LEU D 107 5 5 HELIX 7 AA7 SER D 110 GLU D 124 1 15 HELIX 8 AA8 THR D 146 LYS D 164 1 19 HELIX 9 AA9 ASN D 176 GLU D 188 1 13 HELIX 10 AB1 ASP D 191 GLY D 193 5 3 HELIX 11 AB2 HIS D 199 THR D 203 5 5 HELIX 12 AB3 ASN D 205 LYS D 215 1 11 HELIX 13 AB4 PRO D 231 ASP D 245 1 15 HELIX 14 AB5 TYR D 247 ASP D 249 5 3 HELIX 15 AB6 THR D 281 ASP D 286 1 6 HELIX 16 AB7 ASP D 286 ASN D 294 1 9 HELIX 17 AB8 ASN D 297 LYS D 306 1 10 HELIX 18 AB9 LYS D 306 PHE D 313 1 8 SHEET 1 AA1 2 ILE D 3 LEU D 5 0 SHEET 2 AA1 2 LYS D 8 ILE D 11 -1 O ILE D 11 N ILE D 3 SHEET 1 AA2 3 THR D 19 LEU D 20 0 SHEET 2 AA2 3 THR D 63 ASP D 66 1 O VAL D 65 N LEU D 20 SHEET 3 AA2 3 ASN D 89 ALA D 92 1 O ASN D 89 N ILE D 64 SHEET 1 AA3 6 THR D 94 GLY D 95 0 SHEET 2 AA3 6 VAL D 136 ALA D 139 1 O KCX D 137 N THR D 94 SHEET 3 AA3 6 ILE D 167 HIS D 170 1 O ILE D 168 N VAL D 136 SHEET 4 AA3 6 ILE D 195 ILE D 197 1 O LEU D 196 N THR D 169 SHEET 5 AA3 6 PHE D 218 LEU D 221 1 O GLY D 220 N ILE D 197 SHEET 6 AA3 6 ILE D 251 ILE D 253 1 O MET D 252 N LEU D 221 LINK C VAL D 136 N KCX D 137 1555 1555 1.32 LINK C KCX D 137 N ILE D 138 1555 1555 1.35 LINK NE2 HIS D 22 FE FE D 401 1555 1555 2.13 LINK NE2 HIS D 24 FE FE D 401 1555 1555 2.04 LINK OQ1 KCX D 137 FE FE D 401 1555 1555 2.12 LINK OQ2 KCX D 137 CO CO D 402 1555 1555 2.02 LINK ND1 HIS D 170 CO CO D 402 1555 1555 2.09 LINK NE2 HIS D 199 CO CO D 402 1555 1555 2.05 LINK OD1 ASP D 256 FE FE D 401 1555 1555 2.23 LINK FE FE D 401 O3 PO4 D 403 1555 1555 2.45 LINK FE FE D 401 O2 PO4 D 403 1555 1555 2.00 LINK CO CO D 402 O4 PO4 D 403 1555 1555 2.49 LINK CO CO D 402 O2 PO4 D 403 1555 1555 1.88 CRYST1 65.260 74.690 138.710 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015323 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013389 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007209 0.00000