HEADER IMMUNE SYSTEM 11-APR-23 8SFV TITLE HIGH AFFINITY NANOBODIES TO GFP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LAG19; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 3 ORGANISM_TAXID: 6100; SOURCE 4 GENE: GFP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 9 ORGANISM_TAXID: 9844; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NANOBODY, NANOBODIES, GFP, GREEN FLUORESCENT PROTEIN, HIGH-AFFINITY KEYWDS 2 ANTIBODY VARIANT, ANTIBODY VARIANT, SINGLE-DOMAIN ANTIBODY, IMMUNE KEYWDS 3 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR N.E.KETAREN,M.P.ROUT,J.B.BONANNO,S.C.ALMO REVDAT 2 30-OCT-24 8SFV 1 REMARK REVDAT 1 22-MAY-24 8SFV 0 JRNL AUTH N.E.KETAREN,M.P.ROUT,S.ALMO JRNL TITL HIGH AFFINITY NANOBODIES TO GFP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2-4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.150 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 51900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.2500 - 4.4100 1.00 3930 151 0.1497 0.1657 REMARK 3 2 4.4100 - 3.5000 1.00 3767 145 0.1407 0.1702 REMARK 3 3 3.5000 - 3.0600 1.00 3723 143 0.1846 0.2173 REMARK 3 4 3.0600 - 2.7800 1.00 3686 142 0.2225 0.2097 REMARK 3 5 2.7800 - 2.5800 0.99 3671 141 0.2041 0.2309 REMARK 3 6 2.5800 - 2.4300 0.99 3644 140 0.1998 0.2414 REMARK 3 7 2.4300 - 2.3100 0.99 3611 138 0.2085 0.2605 REMARK 3 8 2.3100 - 2.2100 0.98 3585 138 0.2165 0.2240 REMARK 3 9 2.2100 - 2.1200 0.97 3569 138 0.2072 0.2182 REMARK 3 10 2.1200 - 2.0500 0.97 3523 135 0.2051 0.2438 REMARK 3 11 2.0500 - 1.9800 0.95 3469 134 0.2173 0.2360 REMARK 3 12 1.9800 - 1.9300 0.92 3382 130 0.2323 0.2724 REMARK 3 13 1.9300 - 1.8800 0.90 3273 125 0.2652 0.2916 REMARK 3 14 1.8800 - 1.8300 0.86 3146 121 0.2919 0.3192 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2909 REMARK 3 ANGLE : 1.150 3928 REMARK 3 CHIRALITY : 0.065 416 REMARK 3 PLANARITY : 0.010 506 REMARK 3 DIHEDRAL : 10.891 396 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -3.7565 -19.2387 -23.0215 REMARK 3 T TENSOR REMARK 3 T11: 0.1837 T22: 0.5526 REMARK 3 T33: 0.4253 T12: -0.0354 REMARK 3 T13: -0.0150 T23: 0.1727 REMARK 3 L TENSOR REMARK 3 L11: -1.1141 L22: 1.4125 REMARK 3 L33: 1.5017 L12: 0.0551 REMARK 3 L13: -0.1018 L23: -0.8703 REMARK 3 S TENSOR REMARK 3 S11: -0.0738 S12: -0.1367 S13: -0.1118 REMARK 3 S21: -0.0831 S22: 0.0543 S23: 0.0287 REMARK 3 S31: 0.2144 S32: -0.0188 S33: 0.0256 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SFV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-23. REMARK 100 THE DEPOSITION ID IS D_1000271873. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0750 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 107447 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.88000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULPHATE, 0.1 M TRIS PH REMARK 280 7.0, 1 M POTASSIUM SODIUM TARTRATE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 55.62550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 55.62550 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.90100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.62550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.45050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.62550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 145.35150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.62550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 145.35150 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.62550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.45050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 55.62550 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 55.62550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 96.90100 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 55.62550 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 55.62550 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 96.90100 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 55.62550 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 145.35150 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 55.62550 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 48.45050 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 55.62550 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 48.45050 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 55.62550 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 145.35150 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 55.62550 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 55.62550 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 96.90100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 -55.62550 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -48.45050 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 307 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 GLY A 232 REMARK 465 MET A 233 REMARK 465 ASP A 234 REMARK 465 GLU A 235 REMARK 465 LEU A 236 REMARK 465 TYR A 237 REMARK 465 LYS A 238 REMARK 465 GLY A 239 REMARK 465 LEU A 240 REMARK 465 GLU A 241 REMARK 465 VAL A 242 REMARK 465 LEU A 243 REMARK 465 PHE A 244 REMARK 465 GLN A 245 REMARK 465 GLY A 246 REMARK 465 PRO A 247 REMARK 465 SER A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 GLY B 1 REMARK 465 GLN B 131 REMARK 465 GLY B 132 REMARK 465 PRO B 133 REMARK 465 SER B 134 REMARK 465 LEU B 135 REMARK 465 GLU B 136 REMARK 465 HIS B 137 REMARK 465 HIS B 138 REMARK 465 HIS B 139 REMARK 465 HIS B 140 REMARK 465 HIS B 141 REMARK 465 HIS B 142 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 467 O HOH A 516 10555 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 5 OE2 REMARK 620 2 LYS A 79 O 107.6 REMARK 620 3 HOH A 420 O 116.3 106.8 REMARK 620 4 HOH A 481 O 114.7 106.5 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 308 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 58 O REMARK 620 2 TYR A 145 OH 97.8 REMARK 620 3 HOH A 491 O 103.1 113.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 59 O REMARK 620 2 THR A 62 OG1 119.3 REMARK 620 3 THR A 63 OG1 131.1 107.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 309 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CR2 A 66 O3 REMARK 620 2 ASN A 121 OD1 98.8 REMARK 620 3 HOH A 473 O 118.8 110.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 310 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 202 OG REMARK 620 2 THR A 203 O 110.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 307 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 421 O REMARK 620 2 HOH A 421 O 114.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 208 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 25 OG REMARK 620 2 HOH B 337 O 130.8 REMARK 620 3 HOH B 338 O 91.8 129.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 206 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 53 OG REMARK 620 2 SER B 55 OG 74.1 REMARK 620 3 THR B 57 OG1 86.9 52.0 REMARK 620 4 HOH B 330 O 82.7 72.8 124.5 REMARK 620 5 HOH B 346 O 118.7 136.8 86.1 145.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 207 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 75 O REMARK 620 2 ASN B 78 OD1 73.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 209 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 113 OE1 REMARK 620 2 HOH B 336 O 135.8 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8G0I RELATED DB: PDB REMARK 900 8G0I IS A NANOBODY BOUND TO GFP BUT BINDING A DIFFERENT EPITOPE DBREF 8SFV A 0 238 UNP P42212 GFP_AEQVI 1 238 DBREF 8SFV B 1 142 PDB 8SFV 8SFV 1 142 SEQADV 8SFV ALA A 1 UNP P42212 INSERTION SEQADV 8SFV CR2 A 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 8SFV CR2 A 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 8SFV CR2 A 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 8SFV ALA A 72 UNP P42212 SER 72 CONFLICT SEQADV 8SFV HIS A 177 UNP P42212 GLN 177 CONFLICT SEQADV 8SFV GLY A 239 UNP P42212 EXPRESSION TAG SEQADV 8SFV LEU A 240 UNP P42212 EXPRESSION TAG SEQADV 8SFV GLU A 241 UNP P42212 EXPRESSION TAG SEQADV 8SFV VAL A 242 UNP P42212 EXPRESSION TAG SEQADV 8SFV LEU A 243 UNP P42212 EXPRESSION TAG SEQADV 8SFV PHE A 244 UNP P42212 EXPRESSION TAG SEQADV 8SFV GLN A 245 UNP P42212 EXPRESSION TAG SEQADV 8SFV GLY A 246 UNP P42212 EXPRESSION TAG SEQADV 8SFV PRO A 247 UNP P42212 EXPRESSION TAG SEQADV 8SFV SER A 248 UNP P42212 EXPRESSION TAG SEQADV 8SFV HIS A 249 UNP P42212 EXPRESSION TAG SEQADV 8SFV HIS A 250 UNP P42212 EXPRESSION TAG SEQADV 8SFV HIS A 251 UNP P42212 EXPRESSION TAG SEQADV 8SFV HIS A 252 UNP P42212 EXPRESSION TAG SEQADV 8SFV HIS A 253 UNP P42212 EXPRESSION TAG SEQADV 8SFV HIS A 254 UNP P42212 EXPRESSION TAG SEQRES 1 A 253 MET ALA SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL SEQRES 2 A 253 PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS SEQRES 3 A 253 LYS PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR SEQRES 4 A 253 TYR GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY SEQRES 5 A 253 LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR PHE SEQRES 6 A 253 CR2 VAL GLN CYS PHE ALA ARG TYR PRO ASP HIS MET LYS SEQRES 7 A 253 GLN HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR SEQRES 8 A 253 VAL GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN SEQRES 9 A 253 TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR SEQRES 10 A 253 LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS SEQRES 11 A 253 GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN SEQRES 12 A 253 TYR ASN SER HIS ASN VAL TYR ILE MET ALA ASP LYS GLN SEQRES 13 A 253 LYS ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG HIS ASN SEQRES 14 A 253 ILE GLU ASP GLY SER VAL HIS LEU ALA ASP HIS TYR GLN SEQRES 15 A 253 GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO SEQRES 16 A 253 ASP ASN HIS TYR LEU SER THR GLN SER ALA LEU SER LYS SEQRES 17 A 253 ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU SEQRES 18 A 253 PHE VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU SEQRES 19 A 253 LEU TYR LYS GLY LEU GLU VAL LEU PHE GLN GLY PRO SER SEQRES 20 A 253 HIS HIS HIS HIS HIS HIS SEQRES 1 B 142 GLY SER MET ALA GLN VAL GLN LEU VAL GLU SER GLY GLY SEQRES 2 B 142 GLY LEU VAL GLN ALA GLY GLY SER LEU ARG LEU SER CYS SEQRES 3 B 142 ALA ALA SER GLY PRO THR GLY ALA MET ALA TRP PHE ARG SEQRES 4 B 142 GLN ALA PRO GLY LYS GLU ARG GLU PHE VAL GLY GLY ILE SEQRES 5 B 142 SER ARG SER GLY THR ASP THR TYR TYR VAL ASP SER VAL SEQRES 6 B 142 LYS GLY ARG PHE THR ILE ASP ARG ASP ASN ALA LYS ASN SEQRES 7 B 142 THR VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP SEQRES 8 B 142 THR ALA VAL TYR TYR CYS ALA ALA ARG ARG SER GLN ILE SEQRES 9 B 142 LEU PHE THR SER ARG THR ASP TYR GLU PHE TRP GLY GLN SEQRES 10 B 142 GLY THR GLN VAL THR VAL SER GLY LEU GLU VAL LEU PHE SEQRES 11 B 142 GLN GLY PRO SER LEU GLU HIS HIS HIS HIS HIS HIS MODRES 8SFV CR2 A 66 SER CHROMOPHORE MODRES 8SFV CR2 A 66 TYR CHROMOPHORE MODRES 8SFV CR2 A 66 GLY CHROMOPHORE HET CR2 A 66 31 HET GOL A 301 14 HET SO4 A 302 5 HET SO4 A 303 5 HET NA A 304 1 HET NA A 305 1 HET NA A 306 1 HET NA A 307 1 HET NA A 308 1 HET NA A 309 1 HET NA A 310 1 HET GOL B 201 13 HET GOL B 202 14 HET SO4 B 203 5 HET SO4 B 204 5 HET SO4 B 205 5 HET NA B 206 1 HET NA B 207 1 HET NA B 208 1 HET NA B 209 1 HETNAM CR2 {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]- HETNAM 2 CR2 5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETSYN CR2 CHROMOPHORE (GLY-TYR-GLY) HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CR2 C13 H13 N3 O4 FORMUL 3 GOL 3(C3 H8 O3) FORMUL 4 SO4 5(O4 S 2-) FORMUL 6 NA 11(NA 1+) FORMUL 22 HOH *170(H2 O) HELIX 1 AA1 SER A 2 LEU A 7 1 6 HELIX 2 AA2 PRO A 56 VAL A 61 5 6 HELIX 3 AA3 VAL A 68 ALA A 72 5 5 HELIX 4 AA4 PRO A 75 HIS A 81 5 7 HELIX 5 AA5 ASP A 82 ALA A 87 1 6 HELIX 6 AA6 LYS A 156 ASN A 159 5 4 HELIX 7 AA7 ASP B 63 LYS B 66 5 4 HELIX 8 AA8 LYS B 88 THR B 92 5 5 HELIX 9 AA9 SER B 108 TYR B 112 5 5 SHEET 1 AA112 VAL A 11 VAL A 22 0 SHEET 2 AA112 HIS A 25 ASP A 36 -1 O PHE A 27 N GLY A 20 SHEET 3 AA112 LYS A 41 CYS A 48 -1 O LYS A 41 N ASP A 36 SHEET 4 AA112 HIS A 217 ALA A 227 -1 O LEU A 220 N LEU A 44 SHEET 5 AA112 HIS A 199 SER A 208 -1 N SER A 202 O THR A 225 SHEET 6 AA112 HIS A 148 ASP A 155 -1 N HIS A 148 O THR A 203 SHEET 7 AA112 GLY A 160 ASN A 170 -1 O LYS A 162 N MET A 153 SHEET 8 AA112 VAL A 176 PRO A 187 -1 O GLN A 183 N VAL A 163 SHEET 9 AA112 TYR A 92 PHE A 100 -1 N VAL A 93 O THR A 186 SHEET 10 AA112 ASN A 105 GLU A 115 -1 O VAL A 112 N TYR A 92 SHEET 11 AA112 THR A 118 ILE A 128 -1 O THR A 118 N GLU A 115 SHEET 12 AA112 VAL A 11 VAL A 22 1 N GLU A 17 O ILE A 123 SHEET 1 AA2 4 LEU B 8 GLY B 12 0 SHEET 2 AA2 4 LEU B 22 ALA B 28 -1 O SER B 25 N SER B 11 SHEET 3 AA2 4 THR B 79 MET B 84 -1 O LEU B 82 N LEU B 24 SHEET 4 AA2 4 PHE B 69 ASP B 74 -1 N THR B 70 O GLN B 83 SHEET 1 AA3 6 GLY B 14 GLN B 17 0 SHEET 2 AA3 6 THR B 119 SER B 124 1 O THR B 122 N GLY B 14 SHEET 3 AA3 6 ALA B 93 ALA B 99 -1 N TYR B 95 O THR B 119 SHEET 4 AA3 6 MET B 35 GLN B 40 -1 N ALA B 36 O ALA B 98 SHEET 5 AA3 6 GLU B 47 ILE B 52 -1 O ILE B 52 N MET B 35 SHEET 6 AA3 6 THR B 59 TYR B 61 -1 O TYR B 60 N GLY B 51 SHEET 1 AA4 4 GLY B 14 GLN B 17 0 SHEET 2 AA4 4 THR B 119 SER B 124 1 O THR B 122 N GLY B 14 SHEET 3 AA4 4 ALA B 93 ALA B 99 -1 N TYR B 95 O THR B 119 SHEET 4 AA4 4 PHE B 114 TRP B 115 -1 O PHE B 114 N ALA B 99 SSBOND 1 CYS B 26 CYS B 97 1555 1555 2.11 LINK C PHE A 64 N1 CR2 A 66 1555 1555 1.42 LINK C3 CR2 A 66 N VAL A 68 1555 1555 1.42 LINK OE2 GLU A 5 NA NA A 305 1555 1555 2.52 LINK O PRO A 54 NA NA A 306 1555 1555 2.69 LINK O PRO A 58 NA NA A 308 1555 1555 2.90 LINK O THR A 59 NA NA A 304 1555 1555 2.78 LINK OG1 THR A 62 NA NA A 304 1555 1555 2.63 LINK OG1 THR A 63 NA NA A 304 1555 1555 2.63 LINK O3 CR2 A 66 NA NA A 309 1555 1555 2.69 LINK O LYS A 79 NA NA A 305 1555 1555 2.56 LINK OD1 ASN A 121 NA NA A 309 1555 1555 2.78 LINK OH TYR A 145 NA NA A 308 1555 1555 2.81 LINK OG SER A 202 NA NA A 310 1555 10555 2.78 LINK O THR A 203 NA NA A 310 1555 10555 2.85 LINK NA NA A 305 O HOH A 420 1555 1555 2.69 LINK NA NA A 305 O HOH A 481 1555 1555 2.55 LINK NA NA A 307 O HOH A 421 1555 1555 3.06 LINK NA NA A 307 O HOH A 421 1555 10555 3.06 LINK NA NA A 308 O HOH A 491 1555 1555 2.74 LINK NA NA A 309 O HOH A 473 1555 1555 2.83 LINK OG SER B 25 NA NA B 208 1555 1555 3.07 LINK OG SER B 53 NA NA B 206 1555 1555 2.97 LINK OG SER B 55 NA NA B 206 1555 1555 2.92 LINK OG1 THR B 57 NA NA B 206 1555 1555 3.10 LINK O ASN B 75 NA NA B 207 1555 1555 2.77 LINK OD1 ASN B 78 NA NA B 207 1555 1555 2.80 LINK OE1 GLU B 113 NA NA B 209 1555 1555 2.75 LINK NA NA B 206 O HOH B 330 1555 1555 2.54 LINK NA NA B 206 O HOH B 346 1555 1555 2.66 LINK NA NA B 208 O HOH B 337 1555 1555 2.95 LINK NA NA B 208 O HOH B 338 1555 1555 2.38 LINK NA NA B 209 O HOH B 336 1555 1555 2.89 CISPEP 1 MET A 88 PRO A 89 0 7.02 CRYST1 111.251 111.251 193.802 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008989 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008989 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005160 0.00000