HEADER PEPTIDE BINDING PROTEIN 12-APR-23 8SGF TITLE KLHDC2 KELCH DOMAIN WITH KLHDC2 C-TERMINAL PEPTIDE BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: KELCH DOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 33,HOST CELL COMPND 5 FACTOR HOMOLOG LCP,HOST CELL FACTOR-LIKE PROTEIN 1,HCLP-1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HIS-SER-VAL-ASN-GLN-ARG-PHE-GLY-SER-ASN-ASN-THR-SER-GLY- COMPND 9 SER; COMPND 10 CHAIN: Y, Z; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KLHDC2, HCA33; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS KLHDC2, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.M.DIGIANANTONIO,M.BEKES,D.R.LANGLEY,K.ZIMMERMAN REVDAT 3 28-FEB-24 8SGF 1 JRNL REVDAT 2 17-JAN-24 8SGF 1 JRNL REVDAT 1 03-JAN-24 8SGF 0 JRNL AUTH C.M.HICKEY,K.M.DIGIANANTONIO,K.ZIMMERMANN,A.HARBIN,C.QUINN, JRNL AUTH 2 A.PATEL,P.GAREISS,A.CHAPMAN,B.TIBERI,J.DOBRODZIEJ,J.CORRADI, JRNL AUTH 3 A.M.CACACE,D.R.LANGLEY,M.BEKES JRNL TITL CO-OPTING THE E3 LIGASE KLHDC2 FOR TARGETED PROTEIN JRNL TITL 2 DEGRADATION BY SMALL MOLECULES. JRNL REF NAT.STRUCT.MOL.BIOL. V. 31 311 2024 JRNL REFN ESSN 1545-9985 JRNL PMID 38177675 JRNL DOI 10.1038/S41594-023-01146-W REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 (18-SEP-2020) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 68.7 REMARK 3 NUMBER OF REFLECTIONS : 86639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 4449 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 51 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.51 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 7.74 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1733 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2152 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1637 REMARK 3 BIN R VALUE (WORKING SET) : 0.2126 REMARK 3 BIN FREE R VALUE : 0.2589 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.54 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5363 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 594 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03450 REMARK 3 B22 (A**2) : 0.84860 REMARK 3 B33 (A**2) : -0.81410 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.42640 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.230 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.102 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.098 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.099 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.096 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5583 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7586 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1832 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 950 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5583 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 676 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4982 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.96 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.44 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.28 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 8.7350 -1.0251 21.6076 REMARK 3 T TENSOR REMARK 3 T11: -0.0185 T22: -0.0208 REMARK 3 T33: -0.0369 T12: -0.0348 REMARK 3 T13: -0.0134 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.0972 L22: 0.3567 REMARK 3 L33: 0.9757 L12: -0.0882 REMARK 3 L13: -0.0450 L23: 0.1715 REMARK 3 S TENSOR REMARK 3 S11: -0.0805 S12: -0.0018 S13: 0.0265 REMARK 3 S21: -0.0173 S22: 0.0715 S23: 0.0254 REMARK 3 S31: -0.0546 S32: 0.0999 S33: 0.0090 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 8.7479 -2.0027 -23.0626 REMARK 3 T TENSOR REMARK 3 T11: -0.0208 T22: -0.0248 REMARK 3 T33: -0.0461 T12: 0.0420 REMARK 3 T13: 0.0041 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 1.6811 L22: 0.3467 REMARK 3 L33: 0.7691 L12: 0.0378 REMARK 3 L13: 0.2203 L23: 0.1297 REMARK 3 S TENSOR REMARK 3 S11: -0.0857 S12: -0.0072 S13: -0.0380 REMARK 3 S21: 0.0129 S22: 0.0572 S23: 0.0210 REMARK 3 S31: 0.0392 S32: 0.0789 S33: 0.0285 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SGF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-23. REMARK 100 THE DEPOSITION ID IS D_1000273732. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC 1.1.7 REMARK 200 DATA SCALING SOFTWARE : AUTOPROC 1.1.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86639 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.418 REMARK 200 RESOLUTION RANGE LOW (A) : 19.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.74700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11MM TRIS PH 8.0, 8MM HEXAMINE COBALT, REMARK 280 260-450 MM NACL, AND 24-34% PEG4000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.09500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 GLY A 4 REMARK 465 ASN A 5 REMARK 465 GLU A 6 REMARK 465 ASP A 7 REMARK 465 LEU A 8 REMARK 465 ARG A 9 REMARK 465 ALA A 10 REMARK 465 ASP A 11 REMARK 465 ASP A 12 REMARK 465 LEU A 13 REMARK 465 PRO A 14 REMARK 465 GLY A 15 REMARK 465 PRO A 16 REMARK 465 ALA A 17 REMARK 465 PHE A 18 REMARK 465 GLU A 19 REMARK 465 SER A 20 REMARK 465 TYR A 21 REMARK 465 GLU A 22 REMARK 465 SER A 23 REMARK 465 MET A 24 REMARK 465 GLU A 25 REMARK 465 LEU A 26 REMARK 465 ALA A 27 REMARK 465 GLN A 54 REMARK 465 VAL A 55 REMARK 465 ARG A 56 REMARK 465 GLY A 57 REMARK 465 LEU A 58 REMARK 465 TYR A 59 REMARK 465 THR A 126 REMARK 465 ASP A 127 REMARK 465 PRO A 361 REMARK 465 LYS A 362 REMARK 465 GLY B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 GLY B 4 REMARK 465 ASN B 5 REMARK 465 GLU B 6 REMARK 465 ASP B 7 REMARK 465 LEU B 8 REMARK 465 ARG B 9 REMARK 465 ALA B 10 REMARK 465 ASP B 11 REMARK 465 ASP B 12 REMARK 465 LEU B 13 REMARK 465 PRO B 14 REMARK 465 GLY B 15 REMARK 465 PRO B 16 REMARK 465 ALA B 17 REMARK 465 PHE B 18 REMARK 465 GLU B 19 REMARK 465 SER B 20 REMARK 465 TYR B 21 REMARK 465 GLU B 22 REMARK 465 SER B 23 REMARK 465 MET B 24 REMARK 465 GLU B 25 REMARK 465 LEU B 26 REMARK 465 ALA B 27 REMARK 465 GLN B 54 REMARK 465 VAL B 55 REMARK 465 ARG B 56 REMARK 465 GLY B 57 REMARK 465 LEU B 58 REMARK 465 PRO B 361 REMARK 465 LYS B 362 REMARK 465 HIS Y 392 REMARK 465 SER Y 393 REMARK 465 VAL Y 394 REMARK 465 ASN Y 395 REMARK 465 GLN Y 396 REMARK 465 ARG Y 397 REMARK 465 PHE Y 398 REMARK 465 GLY Y 399 REMARK 465 SER Y 400 REMARK 465 HIS Z 392 REMARK 465 SER Z 393 REMARK 465 VAL Z 394 REMARK 465 ASN Z 395 REMARK 465 GLN Z 396 REMARK 465 ARG Z 397 REMARK 465 PHE Z 398 REMARK 465 GLY Z 399 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 554 O HOH A 660 2.04 REMARK 500 OD1 ASP A 290 O HOH A 501 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 148 -159.47 -118.47 REMARK 500 LYS A 154 -126.44 56.77 REMARK 500 ASN A 184 31.41 -96.54 REMARK 500 ARG A 238 -115.91 58.55 REMARK 500 ILE A 259 79.38 -118.81 REMARK 500 ALA A 349 73.74 -104.50 REMARK 500 ARG B 128 143.18 95.56 REMARK 500 LEU B 148 -159.44 -117.51 REMARK 500 LYS B 154 -125.52 55.24 REMARK 500 ARG B 238 -118.75 56.00 REMARK 500 TRP B 253 31.24 71.42 REMARK 500 ASN B 341 99.05 -67.06 REMARK 500 ALA B 349 73.61 -104.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8SGE RELATED DB: PDB DBREF 8SGF A 2 362 UNP Q9Y2U9 KLDC2_HUMAN 2 362 DBREF 8SGF B 2 362 UNP Q9Y2U9 KLDC2_HUMAN 2 362 DBREF 8SGF Y 392 406 PDB 8SGF 8SGF 392 406 DBREF 8SGF Z 392 406 PDB 8SGF 8SGF 392 406 SEQADV 8SGF GLY A 1 UNP Q9Y2U9 EXPRESSION TAG SEQADV 8SGF GLY B 1 UNP Q9Y2U9 EXPRESSION TAG SEQRES 1 A 362 GLY ALA ASP GLY ASN GLU ASP LEU ARG ALA ASP ASP LEU SEQRES 2 A 362 PRO GLY PRO ALA PHE GLU SER TYR GLU SER MET GLU LEU SEQRES 3 A 362 ALA CYS PRO ALA GLU ARG SER GLY HIS VAL ALA VAL SER SEQRES 4 A 362 ASP GLY ARG HIS MET PHE VAL TRP GLY GLY TYR LYS SER SEQRES 5 A 362 ASN GLN VAL ARG GLY LEU TYR ASP PHE TYR LEU PRO ARG SEQRES 6 A 362 GLU GLU LEU TRP ILE TYR ASN MET GLU THR GLY ARG TRP SEQRES 7 A 362 LYS LYS ILE ASN THR GLU GLY ASP VAL PRO PRO SER MET SEQRES 8 A 362 SER GLY SER CYS ALA VAL CYS VAL ASP ARG VAL LEU TYR SEQRES 9 A 362 LEU PHE GLY GLY HIS HIS SER ARG GLY ASN THR ASN LYS SEQRES 10 A 362 PHE TYR MET LEU ASP SER ARG SER THR ASP ARG VAL LEU SEQRES 11 A 362 GLN TRP GLU ARG ILE ASP CYS GLN GLY ILE PRO PRO SER SEQRES 12 A 362 SER LYS ASP LYS LEU GLY VAL TRP VAL TYR LYS ASN LYS SEQRES 13 A 362 LEU ILE PHE PHE GLY GLY TYR GLY TYR LEU PRO GLU ASP SEQRES 14 A 362 LYS VAL LEU GLY THR PHE GLU PHE ASP GLU THR SER PHE SEQRES 15 A 362 TRP ASN SER SER HIS PRO ARG GLY TRP ASN ASP HIS VAL SEQRES 16 A 362 HIS ILE LEU ASP THR GLU THR PHE THR TRP SER GLN PRO SEQRES 17 A 362 ILE THR THR GLY LYS ALA PRO SER PRO ARG ALA ALA HIS SEQRES 18 A 362 ALA CYS ALA THR VAL GLY ASN ARG GLY PHE VAL PHE GLY SEQRES 19 A 362 GLY ARG TYR ARG ASP ALA ARG MET ASN ASP LEU HIS TYR SEQRES 20 A 362 LEU ASN LEU ASP THR TRP GLU TRP ASN GLU LEU ILE PRO SEQRES 21 A 362 GLN GLY ILE CYS PRO VAL GLY ARG SER TRP HIS SER LEU SEQRES 22 A 362 THR PRO VAL SER SER ASP HIS LEU PHE LEU PHE GLY GLY SEQRES 23 A 362 PHE THR THR ASP LYS GLN PRO LEU SER ASP ALA TRP THR SEQRES 24 A 362 TYR CYS ILE SER LYS ASN GLU TRP ILE GLN PHE ASN HIS SEQRES 25 A 362 PRO TYR THR GLU LYS PRO ARG LEU TRP HIS THR ALA CYS SEQRES 26 A 362 ALA SER ASP GLU GLY GLU VAL ILE VAL PHE GLY GLY CYS SEQRES 27 A 362 ALA ASN ASN LEU LEU VAL HIS HIS ARG ALA ALA HIS SER SEQRES 28 A 362 ASN GLU ILE LEU ILE PHE SER VAL GLN PRO LYS SEQRES 1 B 362 GLY ALA ASP GLY ASN GLU ASP LEU ARG ALA ASP ASP LEU SEQRES 2 B 362 PRO GLY PRO ALA PHE GLU SER TYR GLU SER MET GLU LEU SEQRES 3 B 362 ALA CYS PRO ALA GLU ARG SER GLY HIS VAL ALA VAL SER SEQRES 4 B 362 ASP GLY ARG HIS MET PHE VAL TRP GLY GLY TYR LYS SER SEQRES 5 B 362 ASN GLN VAL ARG GLY LEU TYR ASP PHE TYR LEU PRO ARG SEQRES 6 B 362 GLU GLU LEU TRP ILE TYR ASN MET GLU THR GLY ARG TRP SEQRES 7 B 362 LYS LYS ILE ASN THR GLU GLY ASP VAL PRO PRO SER MET SEQRES 8 B 362 SER GLY SER CYS ALA VAL CYS VAL ASP ARG VAL LEU TYR SEQRES 9 B 362 LEU PHE GLY GLY HIS HIS SER ARG GLY ASN THR ASN LYS SEQRES 10 B 362 PHE TYR MET LEU ASP SER ARG SER THR ASP ARG VAL LEU SEQRES 11 B 362 GLN TRP GLU ARG ILE ASP CYS GLN GLY ILE PRO PRO SER SEQRES 12 B 362 SER LYS ASP LYS LEU GLY VAL TRP VAL TYR LYS ASN LYS SEQRES 13 B 362 LEU ILE PHE PHE GLY GLY TYR GLY TYR LEU PRO GLU ASP SEQRES 14 B 362 LYS VAL LEU GLY THR PHE GLU PHE ASP GLU THR SER PHE SEQRES 15 B 362 TRP ASN SER SER HIS PRO ARG GLY TRP ASN ASP HIS VAL SEQRES 16 B 362 HIS ILE LEU ASP THR GLU THR PHE THR TRP SER GLN PRO SEQRES 17 B 362 ILE THR THR GLY LYS ALA PRO SER PRO ARG ALA ALA HIS SEQRES 18 B 362 ALA CYS ALA THR VAL GLY ASN ARG GLY PHE VAL PHE GLY SEQRES 19 B 362 GLY ARG TYR ARG ASP ALA ARG MET ASN ASP LEU HIS TYR SEQRES 20 B 362 LEU ASN LEU ASP THR TRP GLU TRP ASN GLU LEU ILE PRO SEQRES 21 B 362 GLN GLY ILE CYS PRO VAL GLY ARG SER TRP HIS SER LEU SEQRES 22 B 362 THR PRO VAL SER SER ASP HIS LEU PHE LEU PHE GLY GLY SEQRES 23 B 362 PHE THR THR ASP LYS GLN PRO LEU SER ASP ALA TRP THR SEQRES 24 B 362 TYR CYS ILE SER LYS ASN GLU TRP ILE GLN PHE ASN HIS SEQRES 25 B 362 PRO TYR THR GLU LYS PRO ARG LEU TRP HIS THR ALA CYS SEQRES 26 B 362 ALA SER ASP GLU GLY GLU VAL ILE VAL PHE GLY GLY CYS SEQRES 27 B 362 ALA ASN ASN LEU LEU VAL HIS HIS ARG ALA ALA HIS SER SEQRES 28 B 362 ASN GLU ILE LEU ILE PHE SER VAL GLN PRO LYS SEQRES 1 Y 15 HIS SER VAL ASN GLN ARG PHE GLY SER ASN ASN THR SER SEQRES 2 Y 15 GLY SER SEQRES 1 Z 15 HIS SER VAL ASN GLN ARG PHE GLY SER ASN ASN THR SER SEQRES 2 Z 15 GLY SER HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HET GOL B 401 6 HET GOL B 402 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 5(C3 H8 O3) FORMUL 10 HOH *594(H2 O) HELIX 1 AA1 GLU A 179 TRP A 183 5 5 HELIX 2 AA2 VAL A 344 ALA A 348 5 5 HELIX 3 AA3 GLU B 179 PHE B 182 5 4 HELIX 4 AA4 VAL B 344 ALA B 348 5 5 HELIX 5 AA5 SER Z 400 SER Z 404 5 5 SHEET 1 AA1 4 VAL A 36 SER A 39 0 SHEET 2 AA1 4 HIS A 43 TRP A 47 -1 O PHE A 45 N VAL A 38 SHEET 3 AA1 4 GLU A 67 ASN A 72 -1 O TRP A 69 N VAL A 46 SHEET 4 AA1 4 TRP A 78 ASN A 82 -1 O ILE A 81 N LEU A 68 SHEET 1 AA2 2 TYR A 50 LYS A 51 0 SHEET 2 AA2 2 PHE A 61 TYR A 62 -1 O PHE A 61 N LYS A 51 SHEET 1 AA3 5 GLU A 84 GLY A 85 0 SHEET 2 AA3 5 GLN A 131 ARG A 134 1 O TRP A 132 N GLU A 84 SHEET 3 AA3 5 PHE A 118 ASP A 122 -1 N MET A 120 O GLU A 133 SHEET 4 AA3 5 VAL A 102 PHE A 106 -1 N LEU A 103 O LEU A 121 SHEET 5 AA3 5 CYS A 95 VAL A 99 -1 N CYS A 95 O PHE A 106 SHEET 1 AA4 2 HIS A 109 HIS A 110 0 SHEET 2 AA4 2 GLY A 113 ASN A 114 -1 O GLY A 113 N HIS A 110 SHEET 1 AA5 4 LYS A 145 ASP A 146 0 SHEET 2 AA5 4 TYR A 163 TYR A 165 -1 O TYR A 163 N ASP A 146 SHEET 3 AA5 4 ARG A 189 ASN A 192 -1 O GLY A 190 N GLY A 164 SHEET 4 AA5 4 PHE A 175 PHE A 177 -1 N GLU A 176 O TRP A 191 SHEET 1 AA6 4 GLY A 149 TYR A 153 0 SHEET 2 AA6 4 LYS A 156 PHE A 160 -1 O ILE A 158 N TRP A 151 SHEET 3 AA6 4 VAL A 195 ASP A 199 -1 O HIS A 196 N PHE A 159 SHEET 4 AA6 4 THR A 204 SER A 206 -1 O SER A 206 N ILE A 197 SHEET 1 AA7 4 ALA A 222 VAL A 226 0 SHEET 2 AA7 4 ARG A 229 TYR A 237 -1 O PHE A 231 N ALA A 224 SHEET 3 AA7 4 ALA A 240 ASN A 249 -1 O MET A 242 N GLY A 235 SHEET 4 AA7 4 TRP A 255 LEU A 258 -1 O LEU A 258 N LEU A 245 SHEET 1 AA8 4 SER A 272 PRO A 275 0 SHEET 2 AA8 4 HIS A 280 PHE A 284 -1 O PHE A 282 N THR A 274 SHEET 3 AA8 4 ALA A 297 CYS A 301 -1 O TRP A 298 N LEU A 283 SHEET 4 AA8 4 GLU A 306 PHE A 310 -1 O PHE A 310 N ALA A 297 SHEET 1 AA9 3 THR A 323 ALA A 326 0 SHEET 2 AA9 3 GLU A 331 PHE A 335 -1 O ILE A 333 N CYS A 325 SHEET 3 AA9 3 ILE A 354 SER A 358 -1 O LEU A 355 N VAL A 334 SHEET 1 AB1 4 VAL B 36 SER B 39 0 SHEET 2 AB1 4 HIS B 43 TRP B 47 -1 O PHE B 45 N VAL B 38 SHEET 3 AB1 4 GLU B 67 ASN B 72 -1 O TRP B 69 N VAL B 46 SHEET 4 AB1 4 TRP B 78 ASN B 82 -1 O ILE B 81 N LEU B 68 SHEET 1 AB2 2 TYR B 50 LYS B 51 0 SHEET 2 AB2 2 PHE B 61 TYR B 62 -1 O PHE B 61 N LYS B 51 SHEET 1 AB3 5 GLU B 84 GLY B 85 0 SHEET 2 AB3 5 GLN B 131 ARG B 134 1 O TRP B 132 N GLU B 84 SHEET 3 AB3 5 PHE B 118 ASP B 122 -1 N MET B 120 O GLU B 133 SHEET 4 AB3 5 VAL B 102 PHE B 106 -1 N LEU B 103 O LEU B 121 SHEET 5 AB3 5 CYS B 95 VAL B 99 -1 N CYS B 95 O PHE B 106 SHEET 1 AB4 2 HIS B 109 HIS B 110 0 SHEET 2 AB4 2 GLY B 113 ASN B 114 -1 O GLY B 113 N HIS B 110 SHEET 1 AB5 4 LYS B 145 ASP B 146 0 SHEET 2 AB5 4 LYS B 156 TYR B 165 -1 O TYR B 163 N ASP B 146 SHEET 3 AB5 4 ARG B 189 ASP B 199 -1 O HIS B 196 N PHE B 159 SHEET 4 AB5 4 PHE B 175 PHE B 177 -1 N GLU B 176 O TRP B 191 SHEET 1 AB6 4 GLY B 149 TYR B 153 0 SHEET 2 AB6 4 LYS B 156 TYR B 165 -1 O ILE B 158 N TRP B 151 SHEET 3 AB6 4 ARG B 189 ASP B 199 -1 O HIS B 196 N PHE B 159 SHEET 4 AB6 4 THR B 204 SER B 206 -1 O SER B 206 N ILE B 197 SHEET 1 AB7 4 ALA B 222 VAL B 226 0 SHEET 2 AB7 4 ARG B 229 TYR B 237 -1 O PHE B 231 N ALA B 224 SHEET 3 AB7 4 ALA B 240 ASN B 249 -1 O MET B 242 N GLY B 235 SHEET 4 AB7 4 TRP B 255 LEU B 258 -1 O LEU B 258 N LEU B 245 SHEET 1 AB8 4 SER B 272 PRO B 275 0 SHEET 2 AB8 4 HIS B 280 PHE B 284 -1 O PHE B 282 N THR B 274 SHEET 3 AB8 4 ALA B 297 CYS B 301 -1 O TRP B 298 N LEU B 283 SHEET 4 AB8 4 GLU B 306 PHE B 310 -1 O PHE B 310 N ALA B 297 SHEET 1 AB9 3 THR B 323 ALA B 326 0 SHEET 2 AB9 3 GLU B 331 PHE B 335 -1 O ILE B 333 N CYS B 325 SHEET 3 AB9 3 ILE B 354 SER B 358 -1 O PHE B 357 N VAL B 332 CRYST1 44.510 88.190 89.340 90.00 104.49 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022467 0.000000 0.005806 0.00000 SCALE2 0.000000 0.011339 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011561 0.00000