HEADER VIRAL PROTEIN 13-APR-23 8SGU TITLE CRYSTAL STRUCTURE OF THE SARS-COV-2 RECEPTOR BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RECEPTOR BINDING DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: SARS-COV-2, 2019-NCOV, COVID-19 VIRUS; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: S, 2; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: EXPI293 KEYWDS CORONAVIRUS, SARS-COV-2, VIRAL PROTEIN, GLYCOPROTEIN, RECEPTOR KEYWDS 2 BINDING DOMAIN, APO, SPIKE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.S.SANKHALA,J.L.JENSEN,M.G.JOYCE REVDAT 3 14-FEB-24 8SGU 1 JRNL REVDAT 2 10-JAN-24 8SGU 1 JRNL REVDAT 1 13-DEC-23 8SGU 0 JRNL AUTH R.S.SANKHALA,V.DUSSUPT,W.H.CHEN,H.BAI,E.J.MARTINEZ, JRNL AUTH 2 J.L.JENSEN,P.A.REES,A.HAJDUCZKI,W.C.CHANG,M.CHOE,L.YAN, JRNL AUTH 3 S.L.STERLING,I.SWAFFORD,C.KUKLIS,S.SOMAN,J.KING,C.CORBITT, JRNL AUTH 4 M.ZEMIL,C.E.PETERSON,L.MENDEZ-RIVERA,S.M.TOWNSLEY, JRNL AUTH 5 G.C.DONOFRIO,K.G.LAL,U.TRAN,E.C.GREEN,C.SMITH,N.DE VAL, JRNL AUTH 6 E.D.LAING,C.C.BRODER,J.R.CURRIER,G.D.GROMOWSKI,L.WIECZOREK, JRNL AUTH 7 M.ROLLAND,D.PAQUIN-PROULX,D.VAN DYK,Z.BRITTON,S.RAJAN, JRNL AUTH 8 Y.M.LOO,P.M.MCTAMNEY,M.T.ESSER,V.R.POLONIS,N.L.MICHAEL, JRNL AUTH 9 S.J.KREBS,K.MODJARRAD,M.G.JOYCE JRNL TITL ANTIBODY TARGETING OF CONSERVED SITES OF VULNERABILITY ON JRNL TITL 2 THE SARS-COV-2 SPIKE RECEPTOR-BINDING DOMAIN. JRNL REF STRUCTURE V. 32 131 2024 JRNL REFN ISSN 0969-2126 JRNL PMID 38157856 JRNL DOI 10.1016/J.STR.2023.11.015 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 75.1 REMARK 3 NUMBER OF REFLECTIONS : 29615 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1482 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.2800 - 4.3400 0.94 3463 183 0.1685 0.1915 REMARK 3 2 4.3400 - 3.4500 0.96 3335 176 0.1371 0.1524 REMARK 3 3 3.4500 - 3.0100 0.96 3289 172 0.1529 0.1968 REMARK 3 4 3.0100 - 2.7400 0.98 3347 177 0.1719 0.1898 REMARK 3 5 2.7400 - 2.5400 0.99 3330 175 0.1815 0.2110 REMARK 3 6 2.5400 - 2.3900 0.97 3294 174 0.1892 0.2698 REMARK 3 7 2.3900 - 2.2700 0.80 2693 142 0.2025 0.2498 REMARK 3 8 2.2700 - 2.1700 0.56 1880 98 0.1957 0.2465 REMARK 3 9 2.1700 - 2.0900 0.43 1461 77 0.2006 0.2361 REMARK 3 10 2.0900 - 2.0200 0.34 1145 61 0.1841 0.2206 REMARK 3 11 2.0200 - 1.9500 0.27 896 47 0.1916 0.2316 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3383 REMARK 3 ANGLE : 1.004 4597 REMARK 3 CHIRALITY : 0.064 494 REMARK 3 PLANARITY : 0.010 592 REMARK 3 DIHEDRAL : 13.542 500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 333 THROUGH 358 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0337 -27.8121 -7.7522 REMARK 3 T TENSOR REMARK 3 T11: 0.0626 T22: 0.2433 REMARK 3 T33: 0.1843 T12: 0.0793 REMARK 3 T13: -0.0063 T23: -0.0644 REMARK 3 L TENSOR REMARK 3 L11: 0.8984 L22: 2.7890 REMARK 3 L33: 1.4425 L12: 0.3959 REMARK 3 L13: -0.4654 L23: -0.1470 REMARK 3 S TENSOR REMARK 3 S11: 0.0219 S12: -0.0513 S13: -0.0280 REMARK 3 S21: 0.0819 S22: 0.0639 S23: -0.5145 REMARK 3 S31: 0.0301 S32: 0.5631 S33: 0.2721 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 359 THROUGH 409 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9831 -18.2630 -4.1646 REMARK 3 T TENSOR REMARK 3 T11: 0.0440 T22: 0.1073 REMARK 3 T33: 0.1577 T12: -0.0304 REMARK 3 T13: -0.0331 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 0.9111 L22: 1.0623 REMARK 3 L33: 0.9650 L12: -0.2807 REMARK 3 L13: -0.1165 L23: 0.0499 REMARK 3 S TENSOR REMARK 3 S11: -0.0464 S12: -0.0141 S13: 0.1152 REMARK 3 S21: 0.1163 S22: 0.0496 S23: -0.2183 REMARK 3 S31: -0.1857 S32: 0.3324 S33: 0.1392 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 410 THROUGH 459 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5358 -27.8871 -14.6484 REMARK 3 T TENSOR REMARK 3 T11: 0.0604 T22: 0.0814 REMARK 3 T33: 0.0936 T12: -0.0475 REMARK 3 T13: 0.0483 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 0.3657 L22: 1.1610 REMARK 3 L33: 0.8544 L12: 0.3189 REMARK 3 L13: 0.4864 L23: 0.4109 REMARK 3 S TENSOR REMARK 3 S11: -0.0913 S12: 0.1910 S13: -0.0471 REMARK 3 S21: -0.2304 S22: 0.0922 S23: -0.1041 REMARK 3 S31: 0.0166 S32: 0.1841 S33: 0.0651 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 460 THROUGH 479 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3792 -41.3455 -12.1477 REMARK 3 T TENSOR REMARK 3 T11: 0.2066 T22: 0.0741 REMARK 3 T33: 0.1171 T12: 0.0010 REMARK 3 T13: 0.0063 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.6581 L22: 0.7675 REMARK 3 L33: 2.4107 L12: -0.1401 REMARK 3 L13: 0.5686 L23: 1.0702 REMARK 3 S TENSOR REMARK 3 S11: 0.1024 S12: 0.0426 S13: -0.2194 REMARK 3 S21: 0.3617 S22: -0.1042 S23: 0.1197 REMARK 3 S31: 0.5816 S32: -0.0837 S33: -0.0573 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 480 THROUGH 516 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4530 -32.1428 -20.3875 REMARK 3 T TENSOR REMARK 3 T11: 0.1761 T22: 0.1328 REMARK 3 T33: 0.0697 T12: -0.0351 REMARK 3 T13: 0.0007 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 0.8500 L22: 1.2073 REMARK 3 L33: 0.5747 L12: 0.2712 REMARK 3 L13: 0.1438 L23: 0.4807 REMARK 3 S TENSOR REMARK 3 S11: -0.1184 S12: 0.2422 S13: -0.0593 REMARK 3 S21: -0.3274 S22: 0.0897 S23: 0.0350 REMARK 3 S31: 0.0463 S32: 0.1166 S33: -0.0186 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 517 THROUGH 533 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3263 -19.1623 11.5384 REMARK 3 T TENSOR REMARK 3 T11: 0.3383 T22: 0.2508 REMARK 3 T33: 0.2473 T12: -0.0200 REMARK 3 T13: -0.1596 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 7.6096 L22: 1.5945 REMARK 3 L33: 7.1889 L12: 0.3373 REMARK 3 L13: -3.2048 L23: -3.0874 REMARK 3 S TENSOR REMARK 3 S11: 0.1882 S12: -0.0126 S13: 0.6989 REMARK 3 S21: 0.4627 S22: 0.0693 S23: -0.0755 REMARK 3 S31: -0.5069 S32: 0.3513 S33: 0.6613 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SGU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-APR-23. REMARK 100 THE DEPOSITION ID IS D_1000270970. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38164 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% JEFFAMINE D2000, 10% JEFFAMINE REMARK 280 M2005, 0.2 M NACL, 0.1M MES PH 5.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.88000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.27600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.27600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 121.32000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.27600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.27600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.44000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.27600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.27600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 121.32000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.27600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.27600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.44000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.88000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 781 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 840 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 331 REMARK 465 ILE A 332 REMARK 465 HIS A 534 REMARK 465 HIS A 535 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 341 -61.20 -96.02 REMARK 500 ASN A 343 32.79 -96.02 REMARK 500 ALA A 352 41.29 -108.81 REMARK 500 ASN A 388 5.80 -69.16 REMARK 500 PHE A 400 176.06 179.12 REMARK 500 ASN A 422 -38.82 -133.91 REMARK 500 ASP A 428 33.94 -94.17 REMARK 500 ARG A 457 146.23 -172.24 REMARK 500 ASN A 481 70.35 -115.09 REMARK 500 ASN A 487 2.49 80.57 REMARK 500 REMARK 500 REMARK: NULL DBREF 8SGU A 331 527 UNP P0DTC2 SPIKE_SARS2 331 527 SEQADV 8SGU GLY A 528 UNP P0DTC2 EXPRESSION TAG SEQADV 8SGU SER A 529 UNP P0DTC2 EXPRESSION TAG SEQADV 8SGU HIS A 530 UNP P0DTC2 EXPRESSION TAG SEQADV 8SGU HIS A 531 UNP P0DTC2 EXPRESSION TAG SEQADV 8SGU HIS A 532 UNP P0DTC2 EXPRESSION TAG SEQADV 8SGU HIS A 533 UNP P0DTC2 EXPRESSION TAG SEQADV 8SGU HIS A 534 UNP P0DTC2 EXPRESSION TAG SEQADV 8SGU HIS A 535 UNP P0DTC2 EXPRESSION TAG SEQRES 1 A 205 ASN ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN SEQRES 2 A 205 ALA THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS SEQRES 3 A 205 ARG ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR SEQRES 4 A 205 ASN SER ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SEQRES 5 A 205 SER PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL SEQRES 6 A 205 TYR ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG SEQRES 7 A 205 GLN ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR SEQRES 8 A 205 ASN TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE SEQRES 9 A 205 ALA TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY SEQRES 10 A 205 ASN TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN SEQRES 11 A 205 LEU LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR SEQRES 12 A 205 GLN ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE SEQRES 13 A 205 ASN CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO SEQRES 14 A 205 THR ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL SEQRES 15 A 205 LEU SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS SEQRES 16 A 205 GLY PRO GLY SER HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET FUC B 3 10 HET NAG A 601 14 HET NAG A 602 14 HET FUC A 603 10 HET GOL A 604 6 HET GOL A 605 6 HET GOL A 606 6 HET GOL A 607 6 HET GOL A 608 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 2 FUC 2(C6 H12 O5) FORMUL 6 GOL 5(C3 H8 O3) FORMUL 11 HOH *224(H2 O) HELIX 1 AA1 PRO A 337 ASN A 343 1 7 HELIX 2 AA2 SER A 349 TRP A 353 5 5 HELIX 3 AA3 TYR A 365 ASN A 370 1 6 HELIX 4 AA4 LYS A 386 ASP A 389 5 4 HELIX 5 AA5 ASP A 405 ILE A 410 5 6 HELIX 6 AA6 GLY A 416 ASN A 422 1 7 HELIX 7 AA7 SER A 438 SER A 443 1 6 HELIX 8 AA8 GLY A 502 TYR A 505 5 4 SHEET 1 AA1 5 ASN A 354 ILE A 358 0 SHEET 2 AA1 5 ASN A 394 ARG A 403 -1 O ALA A 397 N LYS A 356 SHEET 3 AA1 5 PRO A 507 GLU A 516 -1 O VAL A 512 N ASP A 398 SHEET 4 AA1 5 GLY A 431 ASN A 437 -1 N ILE A 434 O VAL A 511 SHEET 5 AA1 5 THR A 376 TYR A 380 -1 N LYS A 378 O VAL A 433 SHEET 1 AA2 3 CYS A 361 VAL A 362 0 SHEET 2 AA2 3 VAL A 524 CYS A 525 1 O CYS A 525 N CYS A 361 SHEET 3 AA2 3 CYS A 391 PHE A 392 -1 N PHE A 392 O VAL A 524 SHEET 1 AA3 2 LEU A 452 ARG A 454 0 SHEET 2 AA3 2 LEU A 492 SER A 494 -1 O GLN A 493 N TYR A 453 SHEET 1 AA4 2 TYR A 473 GLN A 474 0 SHEET 2 AA4 2 CYS A 488 TYR A 489 -1 O TYR A 489 N TYR A 473 SSBOND 1 CYS A 336 CYS A 361 1555 1555 2.04 SSBOND 2 CYS A 379 CYS A 432 1555 1555 2.23 SSBOND 3 CYS A 391 CYS A 525 1555 1555 2.03 SSBOND 4 CYS A 480 CYS A 488 1555 1555 2.27 LINK ND2AASN A 343 C1 ANAG A 601 1555 1555 1.45 LINK ND2BASN A 343 C1 BNAG B 1 1555 1555 1.46 LINK O4 ANAG A 601 C1 ANAG A 602 1555 1555 1.44 LINK O6 ANAG A 601 C1 AFUC A 603 1555 1555 1.45 LINK O4 BNAG B 1 C1 BNAG B 2 1555 1555 1.44 LINK O6 BNAG B 1 C1 BFUC B 3 1555 1555 1.45 CRYST1 80.552 80.552 161.760 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012414 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006182 0.00000