HEADER TRANSFERASE/INHIBITOR 14-APR-23 8SHR TITLE CRYSTAL STRUCTURE OF PRMT3 WITH COMPOUND YD1-214 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE N-METHYLTRANSFERASE 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN METHYLTRANSFERASE- COMPND 5 LIKE PROTEIN 3; COMPND 6 EC: 2.1.1.319; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRMT3, HRMT1L3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PRMT3, YD1-214, TRANSFERASE, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 3 TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.SONG,A.DONG,Y.DENG,R.HUANG,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN, AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 1 17-APR-24 8SHR 0 JRNL AUTH X.SONG,A.DONG,Y.DENG,R.HUANG,C.H.ARROWSMITH,A.M.EDWARDS, JRNL AUTH 2 J.MIN,STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF PRMT3 WITH COMPOUND YD1-214 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 33334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1058 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2405 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2391 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 139 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.50000 REMARK 3 B22 (A**2) : 0.50000 REMARK 3 B33 (A**2) : -1.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.869 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2488 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2284 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3377 ; 1.335 ; 1.633 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5289 ; 1.314 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 312 ; 7.214 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;32.883 ;23.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 418 ;14.045 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;11.752 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 343 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2847 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 503 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1249 ; 3.000 ; 3.777 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1247 ; 2.994 ; 3.775 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1560 ; 4.083 ; 5.646 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1561 ; 4.081 ; 5.646 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1239 ; 3.527 ; 4.077 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1237 ; 3.529 ; 4.077 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1816 ; 5.415 ; 5.972 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2740 ; 7.009 ;44.791 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2714 ; 6.984 ;44.667 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8SHR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000271359. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34468 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.10 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 17.60 REMARK 200 R MERGE FOR SHELL (I) : 0.98500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M SODIUM MALONATE PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.57100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.10550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.10550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 131.35650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.10550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.10550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.78550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.10550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.10550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 131.35650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.10550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.10550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.78550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 87.57100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS CONSTRUCT ONLY COMPRISES THE METHYLTRANSFERASE DOMAIN REMARK 300 OF PROTEIN ARGININE N-METHYLTRANSFERASE 3. THE AUTHORS DO NOT KNOW REMARK 300 THE QUATERNARY STRUCTURE OF THIS DOMAIN IN ISOLATION. HOWEVER, THE REMARK 300 SOFTWARE PISA PREDICTS IT TO BE A DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 192 REMARK 465 GLY A 193 REMARK 465 SER A 194 REMARK 465 SER A 195 REMARK 465 HIS A 196 REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 SER A 202 REMARK 465 SER A 203 REMARK 465 GLY A 204 REMARK 465 LEU A 205 REMARK 465 VAL A 206 REMARK 465 PRO A 207 REMARK 465 ARG A 208 REMARK 465 GLY A 209 REMARK 465 SER A 210 REMARK 465 ASP A 211 REMARK 465 LEU A 212 REMARK 465 GLN A 213 REMARK 465 GLU A 214 REMARK 465 ASP A 215 REMARK 465 GLU A 216 REMARK 465 ASP A 217 REMARK 465 GLY A 218 REMARK 465 VAL A 219 REMARK 465 GLN A 531 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 220 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A 221 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 222 OG REMARK 470 SER A 223 OG REMARK 470 ILE A 229 CD1 REMARK 470 LYS A 237 NZ REMARK 470 LYS A 255 CE NZ REMARK 470 LYS A 275 NZ REMARK 470 GLU A 288 CG CD OE1 OE2 REMARK 470 ARG A 298 CD NE CZ NH1 NH2 REMARK 470 LYS A 312 CE NZ REMARK 470 GLU A 321 CG CD OE1 OE2 REMARK 470 GLU A 338 CG CD OE1 OE2 REMARK 470 LYS A 354 CG CD CE NZ REMARK 470 LYS A 375 NZ REMARK 470 LYS A 396 CD CE NZ REMARK 470 ILE A 429 CD1 REMARK 470 LYS A 441 CG CD CE NZ REMARK 470 LYS A 489 CD CE NZ REMARK 470 LYS A 500 CE NZ REMARK 470 LYS A 507 NZ REMARK 470 LYS A 509 CD CE NZ REMARK 470 LYS A 510 CG CD CE NZ REMARK 470 ASP A 511 CG OD1 OD2 REMARK 470 ARG A 513 NH1 NH2 REMARK 470 LEU A 530 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 830 O HOH A 831 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 319 9.97 -69.49 REMARK 500 LEU A 335 -50.03 67.59 REMARK 500 GLU A 338 33.40 38.11 REMARK 500 ASP A 372 78.50 -150.43 REMARK 500 ILE A 380 -66.37 -109.97 REMARK 500 GLU A 460 -51.84 -126.69 REMARK 500 LYS A 481 -135.44 49.96 REMARK 500 LYS A 510 -79.05 -70.04 REMARK 500 REMARK 500 REMARK: NULL DBREF 8SHR A 211 531 UNP O60678 ANM3_HUMAN 211 531 SEQADV 8SHR MET A 192 UNP O60678 INITIATING METHIONINE SEQADV 8SHR GLY A 193 UNP O60678 EXPRESSION TAG SEQADV 8SHR SER A 194 UNP O60678 EXPRESSION TAG SEQADV 8SHR SER A 195 UNP O60678 EXPRESSION TAG SEQADV 8SHR HIS A 196 UNP O60678 EXPRESSION TAG SEQADV 8SHR HIS A 197 UNP O60678 EXPRESSION TAG SEQADV 8SHR HIS A 198 UNP O60678 EXPRESSION TAG SEQADV 8SHR HIS A 199 UNP O60678 EXPRESSION TAG SEQADV 8SHR HIS A 200 UNP O60678 EXPRESSION TAG SEQADV 8SHR HIS A 201 UNP O60678 EXPRESSION TAG SEQADV 8SHR SER A 202 UNP O60678 EXPRESSION TAG SEQADV 8SHR SER A 203 UNP O60678 EXPRESSION TAG SEQADV 8SHR GLY A 204 UNP O60678 EXPRESSION TAG SEQADV 8SHR LEU A 205 UNP O60678 EXPRESSION TAG SEQADV 8SHR VAL A 206 UNP O60678 EXPRESSION TAG SEQADV 8SHR PRO A 207 UNP O60678 EXPRESSION TAG SEQADV 8SHR ARG A 208 UNP O60678 EXPRESSION TAG SEQADV 8SHR GLY A 209 UNP O60678 EXPRESSION TAG SEQADV 8SHR SER A 210 UNP O60678 EXPRESSION TAG SEQRES 1 A 340 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 340 LEU VAL PRO ARG GLY SER ASP LEU GLN GLU ASP GLU ASP SEQRES 3 A 340 GLY VAL TYR PHE SER SER TYR GLY HIS TYR GLY ILE HIS SEQRES 4 A 340 GLU GLU MET LEU LYS ASP LYS ILE ARG THR GLU SER TYR SEQRES 5 A 340 ARG ASP PHE ILE TYR GLN ASN PRO HIS ILE PHE LYS ASP SEQRES 6 A 340 LYS VAL VAL LEU ASP VAL GLY CYS GLY THR GLY ILE LEU SEQRES 7 A 340 SER MET PHE ALA ALA LYS ALA GLY ALA LYS LYS VAL LEU SEQRES 8 A 340 GLY VAL ASP GLN SER GLU ILE LEU TYR GLN ALA MET ASP SEQRES 9 A 340 ILE ILE ARG LEU ASN LYS LEU GLU ASP THR ILE THR LEU SEQRES 10 A 340 ILE LYS GLY LYS ILE GLU GLU VAL HIS LEU PRO VAL GLU SEQRES 11 A 340 LYS VAL ASP VAL ILE ILE SER GLU TRP MET GLY TYR PHE SEQRES 12 A 340 LEU LEU PHE GLU SER MET LEU ASP SER VAL LEU TYR ALA SEQRES 13 A 340 LYS ASN LYS TYR LEU ALA LYS GLY GLY SER VAL TYR PRO SEQRES 14 A 340 ASP ILE CYS THR ILE SER LEU VAL ALA VAL SER ASP VAL SEQRES 15 A 340 ASN LYS HIS ALA ASP ARG ILE ALA PHE TRP ASP ASP VAL SEQRES 16 A 340 TYR GLY PHE LYS MET SER CYS MET LYS LYS ALA VAL ILE SEQRES 17 A 340 PRO GLU ALA VAL VAL GLU VAL LEU ASP PRO LYS THR LEU SEQRES 18 A 340 ILE SER GLU PRO CYS GLY ILE LYS HIS ILE ASP CYS HIS SEQRES 19 A 340 THR THR SER ILE SER ASP LEU GLU PHE SER SER ASP PHE SEQRES 20 A 340 THR LEU LYS ILE THR ARG THR SER MET CYS THR ALA ILE SEQRES 21 A 340 ALA GLY TYR PHE ASP ILE TYR PHE GLU LYS ASN CYS HIS SEQRES 22 A 340 ASN ARG VAL VAL PHE SER THR GLY PRO GLN SER THR LYS SEQRES 23 A 340 THR HIS TRP LYS GLN THR VAL PHE LEU LEU GLU LYS PRO SEQRES 24 A 340 PHE SER VAL LYS ALA GLY GLU ALA LEU LYS GLY LYS VAL SEQRES 25 A 340 THR VAL HIS LYS ASN LYS LYS ASP PRO ARG SER LEU THR SEQRES 26 A 340 VAL THR LEU THR LEU ASN ASN SER THR GLN THR TYR GLY SEQRES 27 A 340 LEU GLN HET HIY A 601 31 HETNAM HIY 5'-S-[2-(PHENYLCARBAMAMIDO)ETHYL]-5'-THIOADENOSINE FORMUL 2 HIY C19 H23 N7 O4 S FORMUL 3 HOH *139(H2 O) HELIX 1 AA1 SER A 222 GLY A 225 5 4 HELIX 2 AA2 HIS A 226 LYS A 235 1 10 HELIX 3 AA3 ASP A 236 ASN A 250 1 15 HELIX 4 AA4 PRO A 251 PHE A 254 5 4 HELIX 5 AA5 GLY A 267 ALA A 276 1 10 HELIX 6 AA6 GLU A 288 ASN A 300 1 13 HELIX 7 AA7 MET A 340 TYR A 351 1 12 HELIX 8 AA8 ASP A 372 ILE A 380 1 9 HELIX 9 AA9 ALA A 381 ASP A 385 5 5 HELIX 10 AB1 MET A 391 CYS A 393 5 3 HELIX 11 AB2 MET A 394 ILE A 399 1 6 HELIX 12 AB3 ASP A 408 LEU A 412 5 5 HELIX 13 AB4 SER A 428 GLU A 433 5 6 SHEET 1 AA1 5 ILE A 306 LYS A 310 0 SHEET 2 AA1 5 LYS A 280 ASP A 285 1 N GLY A 283 O ILE A 309 SHEET 3 AA1 5 VAL A 258 VAL A 262 1 N ASP A 261 O LEU A 282 SHEET 4 AA1 5 VAL A 323 ILE A 327 1 O VAL A 325 N LEU A 260 SHEET 5 AA1 5 LEU A 352 TYR A 359 1 O ALA A 353 N VAL A 323 SHEET 1 AA2 5 VAL A 403 GLU A 405 0 SHEET 2 AA2 5 GLN A 482 VAL A 493 -1 O VAL A 484 N VAL A 403 SHEET 3 AA2 5 SER A 446 PHE A 459 -1 N GLY A 453 O THR A 483 SHEET 4 AA2 5 ILE A 362 VAL A 370 -1 N ILE A 362 O TYR A 458 SHEET 5 AA2 5 CYS A 417 ASP A 423 -1 O ILE A 419 N ILE A 365 SHEET 1 AA3 4 VAL A 403 GLU A 405 0 SHEET 2 AA3 4 GLN A 482 VAL A 493 -1 O VAL A 484 N VAL A 403 SHEET 3 AA3 4 SER A 446 PHE A 459 -1 N GLY A 453 O THR A 483 SHEET 4 AA3 4 VAL A 467 SER A 470 -1 O VAL A 467 N PHE A 459 SHEET 1 AA4 4 PHE A 434 LYS A 441 0 SHEET 2 AA4 4 ALA A 498 LYS A 507 -1 O LEU A 499 N LEU A 440 SHEET 3 AA4 4 LEU A 515 LEU A 521 -1 O THR A 518 N THR A 504 SHEET 4 AA4 4 SER A 524 GLY A 529 -1 O TYR A 528 N VAL A 517 CISPEP 1 TYR A 359 PRO A 360 0 -4.12 CRYST1 70.211 70.211 175.142 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014243 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014243 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005710 0.00000