HEADER LYASE 16-APR-23 8SIJ TITLE CRYSTAL STRUCTURE OF F. VARIUM TRYPTOPHANASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPTOPHANASE 1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FUSOBACTERIUM VARIUM; SOURCE 3 ORGANISM_TAXID: 856; SOURCE 4 GENE: TNAA1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PLP-DEPENDENT ENZYME, TRYPTOPHAN INDOLE-LYASE, TRYPTOPHANASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.L.GRABOSKI,M.R.REDINBO REVDAT 3 29-NOV-23 8SIJ 1 JRNL REVDAT 2 13-SEP-23 8SIJ 1 JRNL REVDAT 1 23-AUG-23 8SIJ 0 JRNL AUTH A.L.GRABOSKI,M.E.KOWALEWSKI,J.B.SIMPSON,X.CAO,M.HA,J.ZHANG, JRNL AUTH 2 W.G.WALTON,D.P.FLAHERTY,M.R.REDINBO JRNL TITL MECHANISM-BASED INHIBITION OF GUT MICROBIAL TRYPTOPHANASES JRNL TITL 2 REDUCES SERUM INDOXYL SULFATE. JRNL REF CELL CHEM BIOL V. 30 1402 2023 JRNL REFN ESSN 2451-9456 JRNL PMID 37633277 JRNL DOI 10.1016/J.CHEMBIOL.2023.07.015 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.890 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 43011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5400 - 6.5500 1.00 2803 156 0.2073 0.1930 REMARK 3 2 6.5500 - 5.2000 1.00 2648 131 0.2116 0.2436 REMARK 3 3 5.2000 - 4.5500 1.00 2604 157 0.1878 0.2245 REMARK 3 4 4.5500 - 4.1300 1.00 2570 134 0.1868 0.2334 REMARK 3 5 4.1300 - 3.8300 1.00 2568 138 0.2212 0.2404 REMARK 3 6 3.8300 - 3.6100 1.00 2567 134 0.2248 0.2711 REMARK 3 7 3.6100 - 3.4300 1.00 2543 116 0.2444 0.2940 REMARK 3 8 3.4300 - 3.2800 1.00 2519 142 0.2841 0.2797 REMARK 3 9 3.2800 - 3.1500 1.00 2534 147 0.2920 0.3234 REMARK 3 10 3.1500 - 3.0400 1.00 2520 133 0.3099 0.3010 REMARK 3 11 3.0400 - 2.9500 1.00 2525 138 0.3184 0.3593 REMARK 3 12 2.9500 - 2.8600 0.99 2481 136 0.3270 0.3064 REMARK 3 13 2.8600 - 2.7900 0.99 2464 151 0.3347 0.3352 REMARK 3 14 2.7900 - 2.7200 0.99 2525 127 0.3570 0.3768 REMARK 3 15 2.7200 - 2.6600 0.99 2488 127 0.3448 0.3983 REMARK 3 16 2.6600 - 2.6000 0.98 2462 123 0.3766 0.3734 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.401 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.275 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6935 REMARK 3 ANGLE : 1.184 9395 REMARK 3 CHIRALITY : 0.075 1022 REMARK 3 PLANARITY : 0.006 1227 REMARK 3 DIHEDRAL : 20.892 2506 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 22.8160 42.7878 11.1760 REMARK 3 T TENSOR REMARK 3 T11: 0.6992 T22: 0.3272 REMARK 3 T33: 0.5579 T12: -0.0007 REMARK 3 T13: -0.1807 T23: -0.0541 REMARK 3 L TENSOR REMARK 3 L11: 1.6493 L22: 1.8346 REMARK 3 L33: 2.1283 L12: -0.8471 REMARK 3 L13: 0.5127 L23: -0.3398 REMARK 3 S TENSOR REMARK 3 S11: -0.4564 S12: -0.1175 S13: 0.4671 REMARK 3 S21: 0.7022 S22: 0.0736 S23: -0.3933 REMARK 3 S31: -0.6756 S32: 0.0340 S33: 0.3505 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-23. REMARK 100 THE DEPOSITION ID IS D_1000273638. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43050 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 48.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.14120 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.66200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M TRIS HYDROCHLORIDE PH 7, 1 M REMARK 280 SODIUM CITRATE, AND 0.2 M SODIUM CHLORIDE. CRYSTALS FORMED IN A REMARK 280 2:1 PROTEIN (11.1 MG/ML) TO MOTHER LIQUOR RATIO, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 139.25750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.29450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.29450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.62875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.29450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.29450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 208.88625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.29450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.29450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 69.62875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.29450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.29450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 208.88625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 139.25750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ARG A 129 REMARK 465 ALA A 130 REMARK 465 ASP A 141 REMARK 465 CYS A 142 REMARK 465 VAL A 143 REMARK 465 ILE A 144 REMARK 465 GLU A 145 REMARK 465 GLU A 146 REMARK 465 ALA A 147 REMARK 465 LYS A 148 REMARK 465 ASP A 149 REMARK 465 PRO A 150 REMARK 465 SER A 151 REMARK 465 HIS A 152 REMARK 465 ARG A 153 REMARK 465 GLU A 462 REMARK 465 GLU A 463 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 GLY B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 THR B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLY B 116 REMARK 465 THR B 127 REMARK 465 THR B 128 REMARK 465 ARG B 129 REMARK 465 ALA B 130 REMARK 465 ILE B 140 REMARK 465 ASP B 141 REMARK 465 CYS B 142 REMARK 465 VAL B 143 REMARK 465 ILE B 144 REMARK 465 GLU B 145 REMARK 465 GLU B 146 REMARK 465 ALA B 147 REMARK 465 LYS B 148 REMARK 465 ASP B 149 REMARK 465 PRO B 150 REMARK 465 SER B 151 REMARK 465 HIS B 152 REMARK 465 ARG B 153 REMARK 465 GLU B 462 REMARK 465 GLU B 463 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CD CE NZ REMARK 470 LYS A 19 CE NZ REMARK 470 GLU A 24 CD OE1 OE2 REMARK 470 LYS A 31 CD CE NZ REMARK 470 LYS A 41 NZ REMARK 470 ARG A 68 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 106 CE NZ REMARK 470 PHE A 112 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 117 CD CE NZ REMARK 470 PHE A 118 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 125 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS A 131 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 133 CG1 CG2 CD1 REMARK 470 ARG A 138 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 140 CG1 CG2 CD1 REMARK 470 LYS A 155 CE NZ REMARK 470 GLU A 163 CG CD OE1 OE2 REMARK 470 LYS A 164 CE NZ REMARK 470 GLU A 166 CG CD OE1 OE2 REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 LYS A 172 CE NZ REMARK 470 GLU A 175 CG CD OE1 OE2 REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 ARG A 200 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 204 CG CD OE1 OE2 REMARK 470 LYS A 207 CG CD CE NZ REMARK 470 LYS A 208 CG CD CE NZ REMARK 470 TYR A 209 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 231 CG CD OE1 OE2 REMARK 470 GLU A 232 CG CD OE1 OE2 REMARK 470 GLN A 235 CG CD OE1 NE2 REMARK 470 ASN A 236 CG OD1 ND2 REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 TYR A 289 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 316 CG CD OE1 OE2 REMARK 470 GLN A 341 CG CD OE1 NE2 REMARK 470 LYS A 433 CE NZ REMARK 470 LYS A 439 CG CD CE NZ REMARK 470 LYS B 4 CD CE NZ REMARK 470 LYS B 19 CD CE NZ REMARK 470 THR B 22 OG1 CG2 REMARK 470 GLU B 24 CG CD OE1 OE2 REMARK 470 GLU B 25 CG CD OE1 OE2 REMARK 470 GLU B 28 CG CD OE1 OE2 REMARK 470 LYS B 29 CD CE NZ REMARK 470 LYS B 31 CG CD CE NZ REMARK 470 GLU B 32 CG CD OE1 OE2 REMARK 470 LYS B 41 CE NZ REMARK 470 ARG B 68 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 106 CD CE NZ REMARK 470 SER B 114 OG REMARK 470 PHE B 125 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 138 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 155 CE NZ REMARK 470 GLU B 163 CD OE1 OE2 REMARK 470 GLU B 171 CG CD OE1 OE2 REMARK 470 GLU B 232 CG CD OE1 OE2 REMARK 470 LYS B 281 CE NZ REMARK 470 TYR B 289 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 354 CD CE NZ REMARK 470 ILE B 360 CG1 CG2 CD1 REMARK 470 LYS B 398 CG CD CE NZ REMARK 470 ASP B 403 CG OD1 OD2 REMARK 470 ILE B 438 CG1 CG2 CD1 REMARK 470 LYS B 439 CG CD CE NZ REMARK 470 ARG B 440 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 443 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 9 37.63 -74.71 REMARK 500 TYR A 35 18.96 58.02 REMARK 500 TYR A 73 -85.28 -51.54 REMARK 500 ASP A 88 -71.01 -64.54 REMARK 500 LEU A 108 -65.83 -90.02 REMARK 500 ASP A 126 144.82 -177.52 REMARK 500 ALA A 135 62.43 -119.80 REMARK 500 ASP A 161 91.76 -69.33 REMARK 500 LYS A 258 2.98 -67.18 REMARK 500 LYS A 259 -88.01 -111.01 REMARK 500 ILE A 262 62.77 38.27 REMARK 500 PHE A 293 4.42 -66.67 REMARK 500 GLN A 341 104.08 -59.76 REMARK 500 TYR A 365 79.38 68.03 REMARK 500 ALA A 378 30.84 -151.26 REMARK 500 ILE A 385 60.93 -108.43 REMARK 500 ILE A 438 99.69 -65.03 REMARK 500 LEU A 451 48.48 37.78 REMARK 500 PRO B 9 38.09 -73.92 REMARK 500 TYR B 46 -77.40 -85.86 REMARK 500 ALA B 135 28.26 -144.11 REMARK 500 LYS B 259 -103.36 -108.64 REMARK 500 TYR B 295 -41.28 -140.07 REMARK 500 TYR B 365 72.83 73.43 REMARK 500 ALA B 378 3.99 -165.81 REMARK 500 ALA B 402 150.09 -48.57 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8SIJ A 1 463 UNP A0A448M3A5_FUSVA DBREF2 8SIJ A A0A448M3A5 1 463 DBREF1 8SIJ B 1 463 UNP A0A448M3A5_FUSVA DBREF2 8SIJ B A0A448M3A5 1 463 SEQADV 8SIJ HIS A -20 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ HIS A -19 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ HIS A -18 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ HIS A -17 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ HIS A -16 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ HIS A -15 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ SER A -14 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ SER A -13 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ GLY A -12 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ VAL A -11 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ ASP A -10 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ LEU A -9 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ GLY A -8 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ THR A -7 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ GLU A -6 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ ASN A -5 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ LEU A -4 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ TYR A -3 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ PHE A -2 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ GLN A -1 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ SER A 0 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ HIS B -20 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ HIS B -19 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ HIS B -18 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ HIS B -17 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ HIS B -16 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ HIS B -15 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ SER B -14 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ SER B -13 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ GLY B -12 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ VAL B -11 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ ASP B -10 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ LEU B -9 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ GLY B -8 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ THR B -7 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ GLU B -6 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ ASN B -5 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ LEU B -4 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ TYR B -3 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ PHE B -2 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ GLN B -1 UNP A0A448M3A EXPRESSION TAG SEQADV 8SIJ SER B 0 UNP A0A448M3A EXPRESSION TAG SEQRES 1 A 484 HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU GLY SEQRES 2 A 484 THR GLU ASN LEU TYR PHE GLN SER MET ALA VAL LYS TYR SEQRES 3 A 484 ILE PRO GLU PRO PHE ARG ILE LYS MET VAL GLU PRO ILE SEQRES 4 A 484 LYS MET LEU THR ARG GLU GLU ARG ILE GLU LYS ILE LYS SEQRES 5 A 484 GLU ALA ASN TYR ASN LEU PHE ASN LEU LYS GLY ALA ASP SEQRES 6 A 484 VAL TYR ILE ASP LEU LEU THR ASP SER GLY THR ASN ALA SEQRES 7 A 484 MET SER HIS ASP GLN TRP SER GLY VAL MET ARG GLY ASP SEQRES 8 A 484 GLU ALA TYR ALA GLY ALA SER SER TYR PHE ARG LEU VAL SEQRES 9 A 484 ASP ALA GLY LYS ASP ILE PHE ASN TYR GLY PHE ILE GLN SEQRES 10 A 484 PRO VAL HIS GLN GLY ARG ALA ALA GLU LYS VAL LEU PHE SEQRES 11 A 484 PRO THR PHE LEU SER PRO GLY LYS PHE ALA ILE SER ASN SEQRES 12 A 484 MET PHE PHE ASP THR THR ARG ALA HIS VAL ILE LEU ALA SEQRES 13 A 484 GLY ALA ARG PRO ILE ASP CYS VAL ILE GLU GLU ALA LYS SEQRES 14 A 484 ASP PRO SER HIS ARG CYS LYS PHE LYS GLY ASN MET ASP SEQRES 15 A 484 VAL GLU LYS MET GLU LYS ILE ILE LEU GLU LYS GLY PRO SEQRES 16 A 484 GLU ASN ILE GLY LEU ILE VAL MET THR ILE THR ASN ASN SEQRES 17 A 484 SER ALA GLY GLY GLN PRO VAL SER MET LYS ASN ILE ARG SEQRES 18 A 484 GLU THR SER GLU ILE CYS LYS LYS TYR GLY ILE PRO PHE SEQRES 19 A 484 ASN ILE ASP ALA ALA ARG TYR ALA GLU ASN ALA TYR PHE SEQRES 20 A 484 ILE LYS ARG ASP GLU GLU GLY TYR GLN ASN LYS SER ILE SEQRES 21 A 484 LYS ASP ILE ILE ARG GLU THR PHE SER TYR ALA ASP MET SEQRES 22 A 484 PHE THR MET SER ALA LYS LYS ASP THR ILE VAL ASN MET SEQRES 23 A 484 GLY GLY LEU ILE GLY VAL LYS ASP PRO GLN SER PRO LEU SEQRES 24 A 484 ILE LEU LYS ILE LYS ALA ASN CYS ILE SER TYR GLU GLY SEQRES 25 A 484 PHE PHE THR TYR GLY GLY LEU GLY GLY ARG ASP LEU GLU SEQRES 26 A 484 ALA LEU ALA ILE GLY LEU TYR GLU GLY ILE ASP GLU ASP SEQRES 27 A 484 TYR LEU LYS TYR ARG ASN GLY GLN MET GLU TYR LEU ALA SEQRES 28 A 484 SER ARG LEU ASP ASP ALA GLY ILE ALA TYR GLN ALA PRO SEQRES 29 A 484 ILE GLY GLY HIS GLY ALA PHE ILE ASP ALA LYS ALA MET SEQRES 30 A 484 PHE PRO GLN ILE PRO TYR ASN GLU TYR PRO GLY GLN VAL SEQRES 31 A 484 LEU ALA ILE GLU LEU TYR ILE GLU ALA GLY ILE ARG THR SEQRES 32 A 484 CYS ASP ILE GLY SER TYR MET LEU GLY ASN ASP PRO ASP SEQRES 33 A 484 THR GLY LYS GLN LEU GLU ALA ASP PHE GLU PHE THR ARG SEQRES 34 A 484 LEU ALA ILE PRO ARG ARG VAL TYR THR GLN SER HIS PHE SEQRES 35 A 484 ASP VAL MET ALA ASP ALA ILE ILE GLU VAL SER LYS ARG SEQRES 36 A 484 ALA HIS GLU ILE LYS ARG GLY TYR LYS ILE ILE TRP GLU SEQRES 37 A 484 PRO PRO ILE LEU ARG HIS PHE GLN ALA SER LEU ALA PRO SEQRES 38 A 484 ILE GLU GLU SEQRES 1 B 484 HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU GLY SEQRES 2 B 484 THR GLU ASN LEU TYR PHE GLN SER MET ALA VAL LYS TYR SEQRES 3 B 484 ILE PRO GLU PRO PHE ARG ILE LYS MET VAL GLU PRO ILE SEQRES 4 B 484 LYS MET LEU THR ARG GLU GLU ARG ILE GLU LYS ILE LYS SEQRES 5 B 484 GLU ALA ASN TYR ASN LEU PHE ASN LEU LYS GLY ALA ASP SEQRES 6 B 484 VAL TYR ILE ASP LEU LEU THR ASP SER GLY THR ASN ALA SEQRES 7 B 484 MET SER HIS ASP GLN TRP SER GLY VAL MET ARG GLY ASP SEQRES 8 B 484 GLU ALA TYR ALA GLY ALA SER SER TYR PHE ARG LEU VAL SEQRES 9 B 484 ASP ALA GLY LYS ASP ILE PHE ASN TYR GLY PHE ILE GLN SEQRES 10 B 484 PRO VAL HIS GLN GLY ARG ALA ALA GLU LYS VAL LEU PHE SEQRES 11 B 484 PRO THR PHE LEU SER PRO GLY LYS PHE ALA ILE SER ASN SEQRES 12 B 484 MET PHE PHE ASP THR THR ARG ALA HIS VAL ILE LEU ALA SEQRES 13 B 484 GLY ALA ARG PRO ILE ASP CYS VAL ILE GLU GLU ALA LYS SEQRES 14 B 484 ASP PRO SER HIS ARG CYS LYS PHE LYS GLY ASN MET ASP SEQRES 15 B 484 VAL GLU LYS MET GLU LYS ILE ILE LEU GLU LYS GLY PRO SEQRES 16 B 484 GLU ASN ILE GLY LEU ILE VAL MET THR ILE THR ASN ASN SEQRES 17 B 484 SER ALA GLY GLY GLN PRO VAL SER MET LYS ASN ILE ARG SEQRES 18 B 484 GLU THR SER GLU ILE CYS LYS LYS TYR GLY ILE PRO PHE SEQRES 19 B 484 ASN ILE ASP ALA ALA ARG TYR ALA GLU ASN ALA TYR PHE SEQRES 20 B 484 ILE LYS ARG ASP GLU GLU GLY TYR GLN ASN LYS SER ILE SEQRES 21 B 484 LYS ASP ILE ILE ARG GLU THR PHE SER TYR ALA ASP MET SEQRES 22 B 484 PHE THR MET SER ALA LYS LYS ASP THR ILE VAL ASN MET SEQRES 23 B 484 GLY GLY LEU ILE GLY VAL LYS ASP PRO GLN SER PRO LEU SEQRES 24 B 484 ILE LEU LYS ILE LYS ALA ASN CYS ILE SER TYR GLU GLY SEQRES 25 B 484 PHE PHE THR TYR GLY GLY LEU GLY GLY ARG ASP LEU GLU SEQRES 26 B 484 ALA LEU ALA ILE GLY LEU TYR GLU GLY ILE ASP GLU ASP SEQRES 27 B 484 TYR LEU LYS TYR ARG ASN GLY GLN MET GLU TYR LEU ALA SEQRES 28 B 484 SER ARG LEU ASP ASP ALA GLY ILE ALA TYR GLN ALA PRO SEQRES 29 B 484 ILE GLY GLY HIS GLY ALA PHE ILE ASP ALA LYS ALA MET SEQRES 30 B 484 PHE PRO GLN ILE PRO TYR ASN GLU TYR PRO GLY GLN VAL SEQRES 31 B 484 LEU ALA ILE GLU LEU TYR ILE GLU ALA GLY ILE ARG THR SEQRES 32 B 484 CYS ASP ILE GLY SER TYR MET LEU GLY ASN ASP PRO ASP SEQRES 33 B 484 THR GLY LYS GLN LEU GLU ALA ASP PHE GLU PHE THR ARG SEQRES 34 B 484 LEU ALA ILE PRO ARG ARG VAL TYR THR GLN SER HIS PHE SEQRES 35 B 484 ASP VAL MET ALA ASP ALA ILE ILE GLU VAL SER LYS ARG SEQRES 36 B 484 ALA HIS GLU ILE LYS ARG GLY TYR LYS ILE ILE TRP GLU SEQRES 37 B 484 PRO PRO ILE LEU ARG HIS PHE GLN ALA SER LEU ALA PRO SEQRES 38 B 484 ILE GLU GLU HET PLP A 501 24 HET CL A 502 1 HET K9E B 501 23 HET CL B 502 1 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM CL CHLORIDE ION HETNAM K9E [4-[[[2-(HYDROXYMETHYL)-1,3-BIS(OXIDANYL)PROPAN-2- HETNAM 2 K9E YL]AMINO]METHYL]-6-METHYL-5-OXIDANYL-PYRIDIN-3- HETNAM 3 K9E YL]METHYL DIHYDROGEN PHOSPHATE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 PLP C8 H10 N O6 P FORMUL 4 CL 2(CL 1-) FORMUL 5 K9E C12 H19 N2 O8 P FORMUL 7 HOH *60(H2 O) HELIX 1 AA1 THR A 22 ALA A 33 1 12 HELIX 2 AA2 ASN A 36 LEU A 40 5 5 HELIX 3 AA3 LYS A 41 VAL A 45 5 5 HELIX 4 AA4 HIS A 60 GLY A 69 1 10 HELIX 5 AA5 ALA A 76 ASN A 91 1 16 HELIX 6 AA6 GLN A 100 LEU A 113 1 14 HELIX 7 AA7 ASP A 161 LYS A 172 1 12 HELIX 8 AA8 ASN A 186 GLY A 190 5 5 HELIX 9 AA9 SER A 195 TYR A 209 1 15 HELIX 10 AB1 ARG A 219 GLU A 231 1 13 HELIX 11 AB2 SER A 238 PHE A 247 1 10 HELIX 12 AB3 PRO A 277 GLU A 290 1 14 HELIX 13 AB4 GLY A 299 GLY A 313 1 15 HELIX 14 AB5 ASP A 315 GLY A 337 1 23 HELIX 15 AB6 ALA A 353 PHE A 357 1 5 HELIX 16 AB7 PRO A 361 GLU A 364 5 4 HELIX 17 AB8 TYR A 365 GLY A 379 1 15 HELIX 18 AB9 GLY A 386 GLY A 391 1 6 HELIX 19 AC1 THR A 417 ALA A 435 1 19 HELIX 20 AC2 HIS A 436 ILE A 438 5 3 HELIX 21 AC3 LEU A 451 ALA A 456 1 6 HELIX 22 AC4 THR B 22 GLU B 32 1 11 HELIX 23 AC5 ASN B 36 LEU B 40 5 5 HELIX 24 AC6 LYS B 41 VAL B 45 5 5 HELIX 25 AC7 HIS B 60 GLY B 69 1 10 HELIX 26 AC8 ALA B 76 ASN B 91 1 16 HELIX 27 AC9 GLN B 100 PHE B 109 1 10 HELIX 28 AD1 PRO B 110 PHE B 112 5 3 HELIX 29 AD2 ASP B 161 GLY B 173 1 13 HELIX 30 AD3 ASN B 186 GLY B 190 5 5 HELIX 31 AD4 SER B 195 GLY B 210 1 16 HELIX 32 AD5 ARG B 219 GLU B 231 1 13 HELIX 33 AD6 SER B 238 TYR B 249 1 12 HELIX 34 AD7 PRO B 277 GLU B 290 1 14 HELIX 35 AD8 GLY B 299 GLY B 313 1 15 HELIX 36 AD9 ASP B 315 ALA B 336 1 22 HELIX 37 AE1 ALA B 353 PHE B 357 1 5 HELIX 38 AE2 PRO B 361 GLU B 364 5 4 HELIX 39 AE3 TYR B 365 GLY B 379 1 15 HELIX 40 AE4 GLY B 386 GLY B 391 1 6 HELIX 41 AE5 THR B 417 ARG B 434 1 18 HELIX 42 AE6 ALA B 435 ILE B 438 5 4 HELIX 43 AE7 LEU B 451 ALA B 456 1 6 SHEET 1 AA1 4 MET A 58 SER A 59 0 SHEET 2 AA1 4 PHE B 10 PRO B 17 1 O VAL B 15 N MET A 58 SHEET 3 AA1 4 PHE A 10 PRO A 17 -1 N MET A 14 O LYS B 13 SHEET 4 AA1 4 MET B 58 SER B 59 1 O MET B 58 N VAL A 15 SHEET 1 AA2 2 ILE A 47 ASP A 48 0 SHEET 2 AA2 2 ILE A 380 ARG A 381 1 O ARG A 381 N ILE A 47 SHEET 1 AA3 7 PHE A 94 VAL A 98 0 SHEET 2 AA3 7 GLY A 267 VAL A 271 -1 O GLY A 267 N VAL A 98 SHEET 3 AA3 7 MET A 252 SER A 256 -1 N PHE A 253 O GLY A 270 SHEET 4 AA3 7 PHE A 213 ASP A 216 1 N ILE A 215 O THR A 254 SHEET 5 AA3 7 ILE A 180 THR A 183 1 N ILE A 180 O ASN A 214 SHEET 6 AA3 7 ALA A 119 SER A 121 1 N ILE A 120 O VAL A 181 SHEET 7 AA3 7 VAL A 132 LEU A 134 1 O ILE A 133 N ALA A 119 SHEET 1 AA4 3 GLY A 348 ASP A 352 0 SHEET 2 AA4 3 PHE A 406 ALA A 410 -1 O LEU A 409 N ALA A 349 SHEET 3 AA4 3 CYS A 383 ILE A 385 -1 N ILE A 385 O PHE A 406 SHEET 1 AA5 2 TYR A 442 TRP A 446 0 SHEET 2 AA5 2 SER A 457 PRO A 460 -1 O SER A 457 N ILE A 445 SHEET 1 AA6 2 ILE B 47 ASP B 48 0 SHEET 2 AA6 2 ILE B 380 ARG B 381 1 O ARG B 381 N ILE B 47 SHEET 1 AA7 7 PHE B 94 VAL B 98 0 SHEET 2 AA7 7 GLY B 267 VAL B 271 -1 O ILE B 269 N GLN B 96 SHEET 3 AA7 7 MET B 252 SER B 256 -1 N PHE B 253 O GLY B 270 SHEET 4 AA7 7 PHE B 213 ASP B 216 1 N ILE B 215 O THR B 254 SHEET 5 AA7 7 ILE B 177 THR B 183 1 N ILE B 180 O ASN B 214 SHEET 6 AA7 7 PHE B 118 SER B 121 1 N PHE B 118 O GLY B 178 SHEET 7 AA7 7 VAL B 132 LEU B 134 1 O ILE B 133 N SER B 121 SHEET 1 AA8 3 GLY B 348 ASP B 352 0 SHEET 2 AA8 3 PHE B 406 ALA B 410 -1 O LEU B 409 N ALA B 349 SHEET 3 AA8 3 CYS B 383 ILE B 385 -1 N CYS B 383 O ARG B 408 CISPEP 1 ILE A 184 THR A 185 0 -14.98 CISPEP 2 ILE B 184 THR B 185 0 -29.25 CISPEP 3 ALA B 342 PRO B 343 0 -12.96 CRYST1 98.589 98.589 278.515 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010143 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010143 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003590 0.00000