HEADER TRANSFERASE/INHIBITOR 16-APR-23 8SIO TITLE CRYSTAL STRUCTURE OF PRMT3 WITH YD1-66 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE N-METHYLTRANSFERASE 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN METHYLTRANSFERASE- COMPND 5 LIKE PROTEIN 3; COMPND 6 EC: 2.1.1.319; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRMT3, HRMT1L3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PRMT3, YD1-66, SGC, TRANSFERASE, TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.SONG,A.DONG,C.H.ARROWSMITH,A.M.EDWARDS,Y.DENG,R.HUANG,J.MIN REVDAT 1 17-APR-24 8SIO 0 JRNL AUTH X.SONG,A.DONG,C.H.ARROWSMITH,A.M.EDWARDS,Y.DENG,R.HUANG, JRNL AUTH 2 J.MIN JRNL TITL CRYSTAL STRUCTURE OF PRMT3 WITH YD1-66 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 42217 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1037 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3021 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4562 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 122 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.21000 REMARK 3 B22 (A**2) : 2.09000 REMARK 3 B33 (A**2) : -0.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.195 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.487 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4750 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4314 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6462 ; 1.446 ; 1.628 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9960 ; 1.266 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 600 ; 7.691 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;33.729 ;23.602 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 757 ;15.154 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;21.857 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 665 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5533 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 972 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2411 ; 3.189 ; 3.857 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2409 ; 3.183 ; 3.856 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3006 ; 4.408 ; 5.763 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3007 ; 4.408 ; 5.763 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2339 ; 3.896 ; 4.184 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2337 ; 3.896 ; 4.184 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3455 ; 5.718 ; 6.135 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4890 ; 7.060 ;44.651 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4879 ; 7.055 ;44.645 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8SIO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000271304. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43292 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.15600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.95000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 8.0, 3.0 M SODIUM REMARK 280 FORMATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.71850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 86.71850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.51950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.39100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.51950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.39100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 86.71850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.51950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.39100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 86.71850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 48.51950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.39100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS CONSTRUCT ONLY COMPRISES THE METHYLTRANSFERASE DOMAIN REMARK 300 OF PROTEIN ARGININE N-METHYLTRANSFERASE 3. THE AUTHORS DO NOT KNOW REMARK 300 THE QUATERNARY STRUCTURE OF THIS DOMAIN IN ISOLATION. HOWEVER, THE REMARK 300 SOFTWARE PISA PREDICTS IT TO BE A DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 86.71850 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 100.78200 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 192 REMARK 465 GLY A 193 REMARK 465 SER A 194 REMARK 465 SER A 195 REMARK 465 HIS A 196 REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 SER A 202 REMARK 465 SER A 203 REMARK 465 GLY A 204 REMARK 465 LEU A 205 REMARK 465 VAL A 206 REMARK 465 PRO A 207 REMARK 465 ARG A 208 REMARK 465 GLY A 209 REMARK 465 SER A 210 REMARK 465 ASP A 211 REMARK 465 LEU A 212 REMARK 465 GLN A 213 REMARK 465 GLU A 214 REMARK 465 ASP A 215 REMARK 465 GLU A 216 REMARK 465 ASP A 217 REMARK 465 GLY A 218 REMARK 465 VAL A 219 REMARK 465 TYR A 220 REMARK 465 PHE A 221 REMARK 465 SER A 222 REMARK 465 SER A 223 REMARK 465 TYR A 224 REMARK 465 LYS A 509 REMARK 465 LYS A 510 REMARK 465 ASP A 511 REMARK 465 PRO A 512 REMARK 465 ARG A 513 REMARK 465 GLN A 531 REMARK 465 MET B 192 REMARK 465 GLY B 193 REMARK 465 SER B 194 REMARK 465 SER B 195 REMARK 465 HIS B 196 REMARK 465 HIS B 197 REMARK 465 HIS B 198 REMARK 465 HIS B 199 REMARK 465 HIS B 200 REMARK 465 HIS B 201 REMARK 465 SER B 202 REMARK 465 SER B 203 REMARK 465 GLY B 204 REMARK 465 LEU B 205 REMARK 465 VAL B 206 REMARK 465 PRO B 207 REMARK 465 ARG B 208 REMARK 465 GLY B 209 REMARK 465 SER B 210 REMARK 465 ASP B 211 REMARK 465 LEU B 212 REMARK 465 GLN B 213 REMARK 465 GLU B 214 REMARK 465 ASP B 215 REMARK 465 GLU B 216 REMARK 465 ASP B 217 REMARK 465 GLY B 218 REMARK 465 VAL B 219 REMARK 465 TYR B 220 REMARK 465 PHE B 221 REMARK 465 SER B 222 REMARK 465 SER B 223 REMARK 465 TYR B 224 REMARK 465 LYS B 509 REMARK 465 LYS B 510 REMARK 465 ASP B 511 REMARK 465 PRO B 512 REMARK 465 ARG B 513 REMARK 465 GLN B 531 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 229 CG1 CG2 CD1 REMARK 470 GLU A 232 OE1 OE2 REMARK 470 LYS A 237 NZ REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 GLU A 288 CG CD OE1 OE2 REMARK 470 ASP A 304 CG OD1 OD2 REMARK 470 LYS A 312 CG CD CE NZ REMARK 470 GLU A 315 CG CD OE1 OE2 REMARK 470 HIS A 317 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 320 CG1 CG2 REMARK 470 GLU A 321 CG CD OE1 OE2 REMARK 470 GLU A 338 CG CD OE1 OE2 REMARK 470 LYS A 350 CG CD CE NZ REMARK 470 LYS A 354 CG CD CE NZ REMARK 470 LYS A 375 CD CE NZ REMARK 470 LYS A 390 CE NZ REMARK 470 LYS A 396 CG CD CE NZ REMARK 470 LYS A 410 CD CE NZ REMARK 470 ILE A 429 CD1 REMARK 470 LYS A 441 CG CD CE NZ REMARK 470 LYS A 477 CD CE NZ REMARK 470 LYS A 489 CG CD CE NZ REMARK 470 LYS A 494 CD CE NZ REMARK 470 LYS A 500 CD CE NZ REMARK 470 LYS A 507 CG CD CE NZ REMARK 470 SER A 514 OG REMARK 470 LEU A 530 CG CD1 CD2 REMARK 470 HIS B 226 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 232 CG CD OE1 OE2 REMARK 470 LYS B 237 CE NZ REMARK 470 LYS B 255 CG CD CE NZ REMARK 470 LYS B 275 CD CE NZ REMARK 470 LYS B 279 CE NZ REMARK 470 LYS B 280 CD CE NZ REMARK 470 GLU B 288 CG CD OE1 OE2 REMARK 470 ARG B 298 NH1 NH2 REMARK 470 LYS B 310 CE NZ REMARK 470 LYS B 312 CD CE NZ REMARK 470 HIS B 317 CG ND1 CD2 CE1 NE2 REMARK 470 VAL B 320 CG1 CG2 REMARK 470 GLU B 321 CG CD OE1 OE2 REMARK 470 GLU B 338 CG CD OE1 OE2 REMARK 470 LYS B 354 CG CD CE NZ REMARK 470 LYS B 375 CD CE NZ REMARK 470 ASP B 378 CG OD1 OD2 REMARK 470 LYS B 390 CG CD CE NZ REMARK 470 LYS B 396 CD CE NZ REMARK 470 GLU B 401 CD OE1 OE2 REMARK 470 GLU B 405 CG CD OE1 OE2 REMARK 470 LYS B 410 CG CD CE NZ REMARK 470 ILE B 429 CG1 CG2 CD1 REMARK 470 LYS B 441 CD CE NZ REMARK 470 LYS B 477 CD CE NZ REMARK 470 LYS B 489 CD CE NZ REMARK 470 LYS B 500 CD CE NZ REMARK 470 LYS B 507 CG CD CE NZ REMARK 470 SER B 514 OG REMARK 470 LEU B 530 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 319 20.08 -79.57 REMARK 500 LEU A 335 -47.62 71.90 REMARK 500 ASP A 372 74.14 -155.66 REMARK 500 GLU A 460 -55.43 -128.66 REMARK 500 LYS A 481 -137.11 44.79 REMARK 500 LYS B 301 42.36 77.58 REMARK 500 LEU B 335 -43.83 72.52 REMARK 500 ASP B 372 81.98 -153.07 REMARK 500 GLU B 460 -56.42 -124.71 REMARK 500 LYS B 481 -137.53 50.43 REMARK 500 REMARK 500 REMARK: NULL DBREF 8SIO A 211 531 UNP O60678 ANM3_HUMAN 211 531 DBREF 8SIO B 211 531 UNP O60678 ANM3_HUMAN 211 531 SEQADV 8SIO MET A 192 UNP O60678 INITIATING METHIONINE SEQADV 8SIO GLY A 193 UNP O60678 EXPRESSION TAG SEQADV 8SIO SER A 194 UNP O60678 EXPRESSION TAG SEQADV 8SIO SER A 195 UNP O60678 EXPRESSION TAG SEQADV 8SIO HIS A 196 UNP O60678 EXPRESSION TAG SEQADV 8SIO HIS A 197 UNP O60678 EXPRESSION TAG SEQADV 8SIO HIS A 198 UNP O60678 EXPRESSION TAG SEQADV 8SIO HIS A 199 UNP O60678 EXPRESSION TAG SEQADV 8SIO HIS A 200 UNP O60678 EXPRESSION TAG SEQADV 8SIO HIS A 201 UNP O60678 EXPRESSION TAG SEQADV 8SIO SER A 202 UNP O60678 EXPRESSION TAG SEQADV 8SIO SER A 203 UNP O60678 EXPRESSION TAG SEQADV 8SIO GLY A 204 UNP O60678 EXPRESSION TAG SEQADV 8SIO LEU A 205 UNP O60678 EXPRESSION TAG SEQADV 8SIO VAL A 206 UNP O60678 EXPRESSION TAG SEQADV 8SIO PRO A 207 UNP O60678 EXPRESSION TAG SEQADV 8SIO ARG A 208 UNP O60678 EXPRESSION TAG SEQADV 8SIO GLY A 209 UNP O60678 EXPRESSION TAG SEQADV 8SIO SER A 210 UNP O60678 EXPRESSION TAG SEQADV 8SIO MET B 192 UNP O60678 INITIATING METHIONINE SEQADV 8SIO GLY B 193 UNP O60678 EXPRESSION TAG SEQADV 8SIO SER B 194 UNP O60678 EXPRESSION TAG SEQADV 8SIO SER B 195 UNP O60678 EXPRESSION TAG SEQADV 8SIO HIS B 196 UNP O60678 EXPRESSION TAG SEQADV 8SIO HIS B 197 UNP O60678 EXPRESSION TAG SEQADV 8SIO HIS B 198 UNP O60678 EXPRESSION TAG SEQADV 8SIO HIS B 199 UNP O60678 EXPRESSION TAG SEQADV 8SIO HIS B 200 UNP O60678 EXPRESSION TAG SEQADV 8SIO HIS B 201 UNP O60678 EXPRESSION TAG SEQADV 8SIO SER B 202 UNP O60678 EXPRESSION TAG SEQADV 8SIO SER B 203 UNP O60678 EXPRESSION TAG SEQADV 8SIO GLY B 204 UNP O60678 EXPRESSION TAG SEQADV 8SIO LEU B 205 UNP O60678 EXPRESSION TAG SEQADV 8SIO VAL B 206 UNP O60678 EXPRESSION TAG SEQADV 8SIO PRO B 207 UNP O60678 EXPRESSION TAG SEQADV 8SIO ARG B 208 UNP O60678 EXPRESSION TAG SEQADV 8SIO GLY B 209 UNP O60678 EXPRESSION TAG SEQADV 8SIO SER B 210 UNP O60678 EXPRESSION TAG SEQRES 1 A 340 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 340 LEU VAL PRO ARG GLY SER ASP LEU GLN GLU ASP GLU ASP SEQRES 3 A 340 GLY VAL TYR PHE SER SER TYR GLY HIS TYR GLY ILE HIS SEQRES 4 A 340 GLU GLU MET LEU LYS ASP LYS ILE ARG THR GLU SER TYR SEQRES 5 A 340 ARG ASP PHE ILE TYR GLN ASN PRO HIS ILE PHE LYS ASP SEQRES 6 A 340 LYS VAL VAL LEU ASP VAL GLY CYS GLY THR GLY ILE LEU SEQRES 7 A 340 SER MET PHE ALA ALA LYS ALA GLY ALA LYS LYS VAL LEU SEQRES 8 A 340 GLY VAL ASP GLN SER GLU ILE LEU TYR GLN ALA MET ASP SEQRES 9 A 340 ILE ILE ARG LEU ASN LYS LEU GLU ASP THR ILE THR LEU SEQRES 10 A 340 ILE LYS GLY LYS ILE GLU GLU VAL HIS LEU PRO VAL GLU SEQRES 11 A 340 LYS VAL ASP VAL ILE ILE SER GLU TRP MET GLY TYR PHE SEQRES 12 A 340 LEU LEU PHE GLU SER MET LEU ASP SER VAL LEU TYR ALA SEQRES 13 A 340 LYS ASN LYS TYR LEU ALA LYS GLY GLY SER VAL TYR PRO SEQRES 14 A 340 ASP ILE CYS THR ILE SER LEU VAL ALA VAL SER ASP VAL SEQRES 15 A 340 ASN LYS HIS ALA ASP ARG ILE ALA PHE TRP ASP ASP VAL SEQRES 16 A 340 TYR GLY PHE LYS MET SER CYS MET LYS LYS ALA VAL ILE SEQRES 17 A 340 PRO GLU ALA VAL VAL GLU VAL LEU ASP PRO LYS THR LEU SEQRES 18 A 340 ILE SER GLU PRO CYS GLY ILE LYS HIS ILE ASP CYS HIS SEQRES 19 A 340 THR THR SER ILE SER ASP LEU GLU PHE SER SER ASP PHE SEQRES 20 A 340 THR LEU LYS ILE THR ARG THR SER MET CYS THR ALA ILE SEQRES 21 A 340 ALA GLY TYR PHE ASP ILE TYR PHE GLU LYS ASN CYS HIS SEQRES 22 A 340 ASN ARG VAL VAL PHE SER THR GLY PRO GLN SER THR LYS SEQRES 23 A 340 THR HIS TRP LYS GLN THR VAL PHE LEU LEU GLU LYS PRO SEQRES 24 A 340 PHE SER VAL LYS ALA GLY GLU ALA LEU LYS GLY LYS VAL SEQRES 25 A 340 THR VAL HIS LYS ASN LYS LYS ASP PRO ARG SER LEU THR SEQRES 26 A 340 VAL THR LEU THR LEU ASN ASN SER THR GLN THR TYR GLY SEQRES 27 A 340 LEU GLN SEQRES 1 B 340 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 340 LEU VAL PRO ARG GLY SER ASP LEU GLN GLU ASP GLU ASP SEQRES 3 B 340 GLY VAL TYR PHE SER SER TYR GLY HIS TYR GLY ILE HIS SEQRES 4 B 340 GLU GLU MET LEU LYS ASP LYS ILE ARG THR GLU SER TYR SEQRES 5 B 340 ARG ASP PHE ILE TYR GLN ASN PRO HIS ILE PHE LYS ASP SEQRES 6 B 340 LYS VAL VAL LEU ASP VAL GLY CYS GLY THR GLY ILE LEU SEQRES 7 B 340 SER MET PHE ALA ALA LYS ALA GLY ALA LYS LYS VAL LEU SEQRES 8 B 340 GLY VAL ASP GLN SER GLU ILE LEU TYR GLN ALA MET ASP SEQRES 9 B 340 ILE ILE ARG LEU ASN LYS LEU GLU ASP THR ILE THR LEU SEQRES 10 B 340 ILE LYS GLY LYS ILE GLU GLU VAL HIS LEU PRO VAL GLU SEQRES 11 B 340 LYS VAL ASP VAL ILE ILE SER GLU TRP MET GLY TYR PHE SEQRES 12 B 340 LEU LEU PHE GLU SER MET LEU ASP SER VAL LEU TYR ALA SEQRES 13 B 340 LYS ASN LYS TYR LEU ALA LYS GLY GLY SER VAL TYR PRO SEQRES 14 B 340 ASP ILE CYS THR ILE SER LEU VAL ALA VAL SER ASP VAL SEQRES 15 B 340 ASN LYS HIS ALA ASP ARG ILE ALA PHE TRP ASP ASP VAL SEQRES 16 B 340 TYR GLY PHE LYS MET SER CYS MET LYS LYS ALA VAL ILE SEQRES 17 B 340 PRO GLU ALA VAL VAL GLU VAL LEU ASP PRO LYS THR LEU SEQRES 18 B 340 ILE SER GLU PRO CYS GLY ILE LYS HIS ILE ASP CYS HIS SEQRES 19 B 340 THR THR SER ILE SER ASP LEU GLU PHE SER SER ASP PHE SEQRES 20 B 340 THR LEU LYS ILE THR ARG THR SER MET CYS THR ALA ILE SEQRES 21 B 340 ALA GLY TYR PHE ASP ILE TYR PHE GLU LYS ASN CYS HIS SEQRES 22 B 340 ASN ARG VAL VAL PHE SER THR GLY PRO GLN SER THR LYS SEQRES 23 B 340 THR HIS TRP LYS GLN THR VAL PHE LEU LEU GLU LYS PRO SEQRES 24 B 340 PHE SER VAL LYS ALA GLY GLU ALA LEU LYS GLY LYS VAL SEQRES 25 B 340 THR VAL HIS LYS ASN LYS LYS ASP PRO ARG SER LEU THR SEQRES 26 B 340 VAL THR LEU THR LEU ASN ASN SER THR GLN THR TYR GLY SEQRES 27 B 340 LEU GLN HET GXF A 601 39 HET GXF B 601 39 HETNAM GXF 5'-S-{3-[N'-(4'-CHLORO[1,1'-BIPHENYL]-3-YL) HETNAM 2 GXF CARBAMIMIDAMIDO]PROPYL}-5'-THIOADENOSINE FORMUL 3 GXF 2(C26 H29 CL N8 O3 S) FORMUL 5 HOH *122(H2 O) HELIX 1 AA1 HIS A 226 ASP A 236 1 11 HELIX 2 AA2 ASP A 236 ASN A 250 1 15 HELIX 3 AA3 PRO A 251 PHE A 254 5 4 HELIX 4 AA4 GLY A 267 ALA A 276 1 10 HELIX 5 AA5 GLU A 288 ASN A 300 1 13 HELIX 6 AA6 MET A 340 TYR A 351 1 12 HELIX 7 AA7 ASP A 372 ILE A 380 1 9 HELIX 8 AA8 ALA A 381 ASP A 385 5 5 HELIX 9 AA9 MET A 391 CYS A 393 5 3 HELIX 10 AB1 MET A 394 ILE A 399 1 6 HELIX 11 AB2 ASP A 408 LEU A 412 5 5 HELIX 12 AB3 SER A 428 GLU A 433 5 6 HELIX 13 AB4 HIS B 226 LYS B 235 1 10 HELIX 14 AB5 ASP B 236 ASN B 250 1 15 HELIX 15 AB6 PRO B 251 PHE B 254 5 4 HELIX 16 AB7 GLY B 267 ALA B 276 1 10 HELIX 17 AB8 GLU B 288 ASN B 300 1 13 HELIX 18 AB9 MET B 340 TYR B 351 1 12 HELIX 19 AC1 ASP B 372 ILE B 380 1 9 HELIX 20 AC2 ALA B 381 ASP B 385 5 5 HELIX 21 AC3 MET B 391 CYS B 393 5 3 HELIX 22 AC4 MET B 394 ILE B 399 1 6 HELIX 23 AC5 ASP B 408 LEU B 412 5 5 HELIX 24 AC6 SER B 428 GLU B 433 5 6 SHEET 1 AA1 5 ILE A 306 LYS A 310 0 SHEET 2 AA1 5 LYS A 280 ASP A 285 1 N VAL A 281 O THR A 307 SHEET 3 AA1 5 VAL A 258 VAL A 262 1 N VAL A 259 O LEU A 282 SHEET 4 AA1 5 VAL A 323 ILE A 327 1 O VAL A 325 N LEU A 260 SHEET 5 AA1 5 LEU A 352 TYR A 359 1 O ALA A 353 N VAL A 323 SHEET 1 AA2 5 VAL A 403 GLU A 405 0 SHEET 2 AA2 5 GLN A 482 VAL A 493 -1 O VAL A 484 N VAL A 403 SHEET 3 AA2 5 SER A 446 PHE A 459 -1 N GLY A 453 O THR A 483 SHEET 4 AA2 5 ILE A 362 VAL A 370 -1 N ILE A 362 O TYR A 458 SHEET 5 AA2 5 CYS A 417 ASP A 423 -1 O ILE A 422 N CYS A 363 SHEET 1 AA3 4 VAL A 403 GLU A 405 0 SHEET 2 AA3 4 GLN A 482 VAL A 493 -1 O VAL A 484 N VAL A 403 SHEET 3 AA3 4 SER A 446 PHE A 459 -1 N GLY A 453 O THR A 483 SHEET 4 AA3 4 VAL A 467 SER A 470 -1 O VAL A 467 N PHE A 459 SHEET 1 AA4 4 PHE A 434 LYS A 441 0 SHEET 2 AA4 4 ALA A 498 HIS A 506 -1 O LEU A 499 N LEU A 440 SHEET 3 AA4 4 THR A 516 LEU A 521 -1 O THR A 518 N THR A 504 SHEET 4 AA4 4 SER A 524 GLY A 529 -1 O GLN A 526 N LEU A 519 SHEET 1 AA5 5 ILE B 306 LYS B 310 0 SHEET 2 AA5 5 LYS B 280 ASP B 285 1 N GLY B 283 O ILE B 309 SHEET 3 AA5 5 VAL B 258 VAL B 262 1 N VAL B 259 O LEU B 282 SHEET 4 AA5 5 VAL B 323 ILE B 327 1 O ASP B 324 N VAL B 258 SHEET 5 AA5 5 LEU B 352 TYR B 359 1 O ALA B 353 N VAL B 323 SHEET 1 AA6 5 VAL B 403 GLU B 405 0 SHEET 2 AA6 5 GLN B 482 VAL B 493 -1 O VAL B 484 N VAL B 403 SHEET 3 AA6 5 SER B 446 PHE B 459 -1 N GLY B 453 O THR B 483 SHEET 4 AA6 5 ILE B 362 VAL B 370 -1 N ILE B 362 O TYR B 458 SHEET 5 AA6 5 CYS B 417 ASP B 423 -1 O ILE B 419 N ILE B 365 SHEET 1 AA7 4 VAL B 403 GLU B 405 0 SHEET 2 AA7 4 GLN B 482 VAL B 493 -1 O VAL B 484 N VAL B 403 SHEET 3 AA7 4 SER B 446 PHE B 459 -1 N GLY B 453 O THR B 483 SHEET 4 AA7 4 VAL B 467 SER B 470 -1 O PHE B 469 N ILE B 457 SHEET 1 AA8 4 PHE B 434 LYS B 441 0 SHEET 2 AA8 4 ALA B 498 HIS B 506 -1 O LEU B 499 N LEU B 440 SHEET 3 AA8 4 THR B 516 LEU B 521 -1 O THR B 518 N THR B 504 SHEET 4 AA8 4 SER B 524 TYR B 528 -1 O TYR B 528 N VAL B 517 CISPEP 1 TYR A 359 PRO A 360 0 1.85 CISPEP 2 TYR B 359 PRO B 360 0 0.86 CRYST1 97.039 100.782 173.437 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010305 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009922 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005766 0.00000