HEADER DE NOVO PROTEIN 18-APR-23 8SJH TITLE ZN-BOUND STRUCTURE OF COMPUTATIONALLY DESIGNED HOMOTRIMER TP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOPOISOMERASE 1; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: TP1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS METALLOPROTEIN, COMPUTATIONAL DESIGN, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.M.HOFFNAGLE,F.A.TEZCAN REVDAT 3 22-MAY-24 8SJH 1 REMARK REVDAT 2 12-JUL-23 8SJH 1 JRNL REVDAT 1 05-JUL-23 8SJH 0 JRNL AUTH A.M.HOFFNAGLE,F.A.TEZCAN JRNL TITL ATOMICALLY ACCURATE DESIGN OF METALLOPROTEINS WITH JRNL TITL 2 PREDEFINED COORDINATION GEOMETRIES. JRNL REF J.AM.CHEM.SOC. V. 145 14208 2023 JRNL REFN ESSN 1520-5126 JRNL PMID 37352018 JRNL DOI 10.1021/JACS.3C04047 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17_3644 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.930 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 42863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.680 REMARK 3 FREE R VALUE TEST SET COUNT : 3906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4400 - 4.8600 0.97 2814 141 0.1671 0.1721 REMARK 3 2 4.8600 - 3.8600 0.96 2780 137 0.1357 0.1544 REMARK 3 3 3.8500 - 3.3700 0.97 2805 135 0.1388 0.1594 REMARK 3 4 3.3700 - 3.0600 0.98 2858 139 0.1593 0.1744 REMARK 3 5 3.0600 - 2.8400 0.98 2834 143 0.1587 0.2078 REMARK 3 6 2.8400 - 2.6700 0.93 2692 130 0.1590 0.2211 REMARK 3 7 2.6700 - 2.5400 0.97 2850 140 0.1760 0.2301 REMARK 3 8 2.5400 - 2.4300 0.98 2844 141 0.1632 0.1922 REMARK 3 9 2.4300 - 2.3400 0.98 2870 141 0.1609 0.2068 REMARK 3 10 2.3400 - 2.2600 0.98 2804 136 0.1602 0.2350 REMARK 3 11 2.2600 - 2.1800 0.98 2849 141 0.1554 0.1701 REMARK 3 12 2.1800 - 2.1200 0.99 2895 143 0.1526 0.1763 REMARK 3 13 2.1200 - 2.0700 0.99 2838 138 0.1623 0.1897 REMARK 3 14 2.0700 - 2.0200 0.98 2879 137 0.1707 0.1791 REMARK 3 15 2.0200 - 1.9700 0.99 2823 137 0.1771 0.2600 REMARK 3 16 1.9700 - 1.9300 0.96 2858 141 0.1794 0.1988 REMARK 3 17 1.9300 - 1.8900 0.98 2829 139 0.1978 0.2330 REMARK 3 18 1.8900 - 1.8500 0.99 2861 143 0.1914 0.2085 REMARK 3 19 1.8500 - 1.8200 0.99 2833 136 0.1861 0.2078 REMARK 3 20 1.8200 - 1.7900 0.99 2951 145 0.2014 0.2761 REMARK 3 21 1.7900 - 1.7600 0.99 2825 139 0.2038 0.2336 REMARK 3 22 1.7600 - 1.7300 0.98 2912 143 0.2015 0.2834 REMARK 3 23 1.7300 - 1.7100 0.98 2778 137 0.2110 0.2248 REMARK 3 24 1.7100 - 1.6800 0.99 2916 146 0.2085 0.2338 REMARK 3 25 1.6800 - 1.6600 0.99 2885 141 0.2196 0.2800 REMARK 3 26 1.6600 - 1.6400 0.98 2797 139 0.2498 0.2811 REMARK 3 27 1.6400 - 1.6200 0.97 2849 140 0.2612 0.3210 REMARK 3 28 1.6200 - 1.6000 0.96 2801 138 0.2686 0.2781 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.167 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2593 REMARK 3 ANGLE : 0.700 3536 REMARK 3 CHIRALITY : 0.042 420 REMARK 3 PLANARITY : 0.004 454 REMARK 3 DIHEDRAL : 24.029 955 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4732 -14.7083 7.9243 REMARK 3 T TENSOR REMARK 3 T11: 0.2436 T22: 0.1105 REMARK 3 T33: 0.1851 T12: 0.0313 REMARK 3 T13: -0.0264 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 4.6249 L22: 7.1601 REMARK 3 L33: 7.7470 L12: 0.1058 REMARK 3 L13: -0.1424 L23: -4.3949 REMARK 3 S TENSOR REMARK 3 S11: 0.1381 S12: 0.1353 S13: -0.2779 REMARK 3 S21: -0.1380 S22: -0.0727 S23: -0.2320 REMARK 3 S31: 0.7684 S32: 0.1542 S33: 0.0472 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3889 -7.1027 9.0344 REMARK 3 T TENSOR REMARK 3 T11: 0.0838 T22: 0.1371 REMARK 3 T33: 0.1498 T12: 0.0090 REMARK 3 T13: 0.0094 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 2.0670 L22: 3.9592 REMARK 3 L33: 7.3877 L12: 0.5149 REMARK 3 L13: 0.1455 L23: -2.5433 REMARK 3 S TENSOR REMARK 3 S11: 0.0224 S12: 0.0527 S13: -0.1153 REMARK 3 S21: -0.0971 S22: 0.0712 S23: -0.0097 REMARK 3 S31: 0.0922 S32: 0.1480 S33: -0.0993 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0973 6.2582 -8.4987 REMARK 3 T TENSOR REMARK 3 T11: 0.5666 T22: 0.3689 REMARK 3 T33: 0.3039 T12: 0.0016 REMARK 3 T13: -0.0203 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 3.3559 L22: 5.2342 REMARK 3 L33: 4.6725 L12: -4.1878 REMARK 3 L13: -3.9577 L23: 4.9451 REMARK 3 S TENSOR REMARK 3 S11: 0.0785 S12: 0.9682 S13: -0.2001 REMARK 3 S21: -1.5319 S22: -0.0510 S23: 0.3238 REMARK 3 S31: 0.1790 S32: 0.0641 S33: -0.0336 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7289 -5.7590 9.7918 REMARK 3 T TENSOR REMARK 3 T11: 0.1102 T22: 0.1691 REMARK 3 T33: 0.1922 T12: 0.0032 REMARK 3 T13: 0.0067 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.3322 L22: 2.1091 REMARK 3 L33: 4.3528 L12: 0.1023 REMARK 3 L13: 0.7237 L23: -0.9324 REMARK 3 S TENSOR REMARK 3 S11: 0.0571 S12: -0.0553 S13: -0.0836 REMARK 3 S21: -0.0185 S22: 0.0428 S23: 0.2337 REMARK 3 S31: 0.1389 S32: -0.1802 S33: -0.1169 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1500 5.6914 18.7923 REMARK 3 T TENSOR REMARK 3 T11: 0.1728 T22: 0.2323 REMARK 3 T33: 0.2406 T12: -0.0232 REMARK 3 T13: -0.0419 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 2.8750 L22: 7.6660 REMARK 3 L33: 3.8627 L12: -2.0067 REMARK 3 L13: 1.3996 L23: -3.6118 REMARK 3 S TENSOR REMARK 3 S11: -0.1746 S12: -0.1249 S13: 0.3357 REMARK 3 S21: 0.4557 S22: -0.0503 S23: -0.7292 REMARK 3 S31: -0.3428 S32: 0.0989 S33: 0.2909 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5177 5.7144 16.5247 REMARK 3 T TENSOR REMARK 3 T11: 0.1228 T22: 0.1844 REMARK 3 T33: 0.1554 T12: -0.0356 REMARK 3 T13: 0.0038 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 2.2035 L22: 5.7877 REMARK 3 L33: 3.1578 L12: -1.4301 REMARK 3 L13: 0.8824 L23: -2.5679 REMARK 3 S TENSOR REMARK 3 S11: 0.0087 S12: -0.1384 S13: 0.1196 REMARK 3 S21: 0.0690 S22: 0.0216 S23: -0.0996 REMARK 3 S31: -0.0785 S32: 0.0680 S33: -0.0593 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8933 20.3390 0.7396 REMARK 3 T TENSOR REMARK 3 T11: 0.4315 T22: 0.3558 REMARK 3 T33: 0.4845 T12: -0.0562 REMARK 3 T13: -0.0050 T23: 0.1311 REMARK 3 L TENSOR REMARK 3 L11: 5.2596 L22: 4.5626 REMARK 3 L33: 5.0064 L12: 4.8405 REMARK 3 L13: 5.1033 L23: 4.7736 REMARK 3 S TENSOR REMARK 3 S11: -0.2848 S12: 0.8073 S13: 1.3533 REMARK 3 S21: -0.5844 S22: 0.0709 S23: -0.5145 REMARK 3 S31: -0.9221 S32: 1.1080 S33: 0.2371 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 56 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5273 1.8722 8.7904 REMARK 3 T TENSOR REMARK 3 T11: 0.1373 T22: 0.1944 REMARK 3 T33: 0.1677 T12: -0.0154 REMARK 3 T13: 0.0205 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.9823 L22: 9.1617 REMARK 3 L33: 4.8796 L12: -1.7352 REMARK 3 L13: 1.3776 L23: -5.6733 REMARK 3 S TENSOR REMARK 3 S11: 0.0086 S12: 0.0874 S13: 0.0356 REMARK 3 S21: -0.1748 S22: -0.0127 S23: -0.1358 REMARK 3 S31: -0.0123 S32: 0.0634 S33: -0.0084 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 81 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7137 -1.2326 11.2364 REMARK 3 T TENSOR REMARK 3 T11: 0.1726 T22: 0.1971 REMARK 3 T33: 0.2479 T12: -0.0051 REMARK 3 T13: 0.0559 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 0.6943 L22: 8.7198 REMARK 3 L33: 6.8696 L12: 0.7642 REMARK 3 L13: -0.9625 L23: -7.1051 REMARK 3 S TENSOR REMARK 3 S11: 0.1350 S12: 0.1039 S13: 0.1802 REMARK 3 S21: 0.1464 S22: -0.1088 S23: -0.3500 REMARK 3 S31: -0.3110 S32: 0.2209 S33: 0.0472 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 106 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.4101 20.4550 1.6706 REMARK 3 T TENSOR REMARK 3 T11: 0.2790 T22: 0.2853 REMARK 3 T33: 0.3777 T12: -0.0386 REMARK 3 T13: -0.0185 T23: 0.0391 REMARK 3 L TENSOR REMARK 3 L11: 9.5921 L22: 8.6175 REMARK 3 L33: 3.4949 L12: 6.8656 REMARK 3 L13: -5.6554 L23: -4.7947 REMARK 3 S TENSOR REMARK 3 S11: 0.1485 S12: -0.6620 S13: -0.9695 REMARK 3 S21: 0.2351 S22: -0.5330 S23: -0.1667 REMARK 3 S31: 0.3648 S32: 0.3225 S33: 0.3492 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0216 6.2310 26.8242 REMARK 3 T TENSOR REMARK 3 T11: 0.2501 T22: 0.2515 REMARK 3 T33: 0.2345 T12: 0.0126 REMARK 3 T13: 0.0956 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 5.3211 L22: 5.8062 REMARK 3 L33: 2.8675 L12: -3.3622 REMARK 3 L13: 2.7418 L23: -4.0445 REMARK 3 S TENSOR REMARK 3 S11: -0.2147 S12: -0.4736 S13: -0.3378 REMARK 3 S21: 0.3805 S22: 0.4323 S23: 0.5806 REMARK 3 S31: 0.1085 S32: -0.4510 S33: -0.2535 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 23 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6807 7.8469 16.2509 REMARK 3 T TENSOR REMARK 3 T11: 0.1288 T22: 0.1646 REMARK 3 T33: 0.1860 T12: 0.0031 REMARK 3 T13: 0.0286 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 1.4701 L22: 2.2020 REMARK 3 L33: 4.9444 L12: -0.7184 REMARK 3 L13: 1.3734 L23: -1.2292 REMARK 3 S TENSOR REMARK 3 S11: -0.1435 S12: -0.1091 S13: 0.0335 REMARK 3 S21: 0.1281 S22: 0.0028 S23: 0.1508 REMARK 3 S31: -0.1051 S32: -0.1836 S33: 0.1103 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 56 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0127 11.6117 22.2708 REMARK 3 T TENSOR REMARK 3 T11: 0.1969 T22: 0.1629 REMARK 3 T33: 0.1885 T12: -0.0110 REMARK 3 T13: -0.0128 T23: -0.0497 REMARK 3 L TENSOR REMARK 3 L11: 2.3408 L22: 3.3496 REMARK 3 L33: 2.3067 L12: -2.2157 REMARK 3 L13: 1.1338 L23: -0.9316 REMARK 3 S TENSOR REMARK 3 S11: -0.3075 S12: -0.2768 S13: 0.2368 REMARK 3 S21: 0.4362 S22: 0.1364 S23: -0.0840 REMARK 3 S31: -0.2766 S32: -0.0445 S33: 0.1756 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SJH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-23. REMARK 100 THE DEPOSITION ID IS D_1000273907. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42863 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 45.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.04634 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.51950 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 200 MM CACL2, 100 MM TRIS REMARK 280 (PH 8.5), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.52000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.70500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.52000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.70500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL B 201 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 365 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 372 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 381 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 108 REMARK 465 GLU A 109 REMARK 465 ASN A 110 REMARK 465 LEU A 111 REMARK 465 TYR A 112 REMARK 465 PHE A 113 REMARK 465 GLN A 114 REMARK 465 SER C 107 REMARK 465 ALA C 108 REMARK 465 GLU C 109 REMARK 465 ASN C 110 REMARK 465 LEU C 111 REMARK 465 TYR C 112 REMARK 465 PHE C 113 REMARK 465 GLN C 114 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU B 94 CA CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 304 O HOH C 318 1.89 REMARK 500 O HOH C 305 O HOH C 309 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 301 O HOH C 332 2556 2.12 REMARK 500 O HOH A 398 O HOH B 316 4546 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 441 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B 442 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH B 443 DISTANCE = 7.78 ANGSTROMS REMARK 525 HOH C 428 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH C 429 DISTANCE = 9.31 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 2 OD1 REMARK 620 2 ASP A 5 OD1 92.8 REMARK 620 3 ASP A 5 OD2 70.5 45.3 REMARK 620 4 HOH A 313 O 68.2 49.9 78.1 REMARK 620 5 HOH A 333 O 119.0 56.4 101.7 51.5 REMARK 620 6 HOH B 385 O 138.4 109.3 100.2 151.7 102.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 5 OD1 REMARK 620 2 GLU A 8 OE1 109.1 REMARK 620 3 HOH A 333 O 57.1 157.3 REMARK 620 4 HOH A 370 O 69.9 113.5 80.3 REMARK 620 5 HOH B 368 O 106.1 88.9 79.3 157.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 66 NE2 REMARK 620 2 HIS B 66 NE2 116.1 REMARK 620 3 HIS C 66 NE2 114.3 114.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 5 OD2 REMARK 620 2 GLU C 8 OE1 79.8 REMARK 620 3 GLU C 8 OE2 105.6 26.7 REMARK 620 4 GLU C 8 OE1 79.8 0.0 26.7 REMARK 620 5 HOH C 303 O 108.1 53.0 50.1 53.0 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8SJF RELATED DB: PDB REMARK 900 RELATED ID: 8SJG RELATED DB: PDB DBREF 8SJH A 1 114 PDB 8SJH 8SJH 1 114 DBREF 8SJH B 1 114 PDB 8SJH 8SJH 1 114 DBREF 8SJH C 1 114 PDB 8SJH 8SJH 1 114 SEQRES 1 A 114 GLN ASP TRP GLU ASP ALA MET GLU THR LEU ASN ASP ASN SEQRES 2 A 114 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ASP GLN VAL SEQRES 3 A 114 ILE ALA ALA LEU LEU TYR MET LEU ALA ALA ALA ILE ALA SEQRES 4 A 114 ALA ALA THR ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 A 114 PRO THR SER GLU GLU ALA LEU ALA PHE ARG LEU GLY MET SEQRES 6 A 114 HIS GLU LEU ALA ALA LEU ILE THR LYS ALA THR ALA LEU SEQRES 7 A 114 ALA TYR GLN GLY LEU VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 A 114 GLU GLN LEU LYS THR THR VAL ASN ALA HIS TRP GLN LYS SEQRES 9 A 114 TYR ARG SER ALA GLU ASN LEU TYR PHE GLN SEQRES 1 B 114 GLN ASP TRP GLU ASP ALA MET GLU THR LEU ASN ASP ASN SEQRES 2 B 114 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ASP GLN VAL SEQRES 3 B 114 ILE ALA ALA LEU LEU TYR MET LEU ALA ALA ALA ILE ALA SEQRES 4 B 114 ALA ALA THR ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 B 114 PRO THR SER GLU GLU ALA LEU ALA PHE ARG LEU GLY MET SEQRES 6 B 114 HIS GLU LEU ALA ALA LEU ILE THR LYS ALA THR ALA LEU SEQRES 7 B 114 ALA TYR GLN GLY LEU VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 B 114 GLU GLN LEU LYS THR THR VAL ASN ALA HIS TRP GLN LYS SEQRES 9 B 114 TYR ARG SER ALA GLU ASN LEU TYR PHE GLN SEQRES 1 C 114 GLN ASP TRP GLU ASP ALA MET GLU THR LEU ASN ASP ASN SEQRES 2 C 114 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ASP GLN VAL SEQRES 3 C 114 ILE ALA ALA LEU LEU TYR MET LEU ALA ALA ALA ILE ALA SEQRES 4 C 114 ALA ALA THR ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 C 114 PRO THR SER GLU GLU ALA LEU ALA PHE ARG LEU GLY MET SEQRES 6 C 114 HIS GLU LEU ALA ALA LEU ILE THR LYS ALA THR ALA LEU SEQRES 7 C 114 ALA TYR GLN GLY LEU VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 C 114 GLU GLN LEU LYS THR THR VAL ASN ALA HIS TRP GLN LYS SEQRES 9 C 114 TYR ARG SER ALA GLU ASN LEU TYR PHE GLN HET ZN A 201 1 HET CA A 202 1 HET CA A 203 1 HET CL B 201 1 HET CL C 201 1 HET CA C 202 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 4 ZN ZN 2+ FORMUL 5 CA 3(CA 2+) FORMUL 7 CL 2(CL 1-) FORMUL 10 HOH *373(H2 O) HELIX 1 AA1 ASP A 2 ALA A 20 1 19 HELIX 2 AA2 ASN A 22 THR A 42 1 21 HELIX 3 AA3 PRO A 45 GLU A 49 5 5 HELIX 4 AA4 SER A 55 GLN A 81 1 27 HELIX 5 AA5 LEU A 83 ARG A 106 1 24 HELIX 6 AA6 ASP B 2 ALA B 20 1 19 HELIX 7 AA7 ASN B 22 THR B 42 1 21 HELIX 8 AA8 PRO B 45 GLU B 49 5 5 HELIX 9 AA9 SER B 55 GLN B 81 1 27 HELIX 10 AB1 LEU B 83 ARG B 106 1 24 HELIX 11 AB2 ALA B 108 TYR B 112 5 5 HELIX 12 AB3 ASP C 2 ALA C 20 1 19 HELIX 13 AB4 ASN C 22 ALA C 41 1 20 HELIX 14 AB5 PRO C 45 GLU C 49 5 5 HELIX 15 AB6 SER C 55 GLN C 81 1 27 HELIX 16 AB7 LEU C 83 ARG C 106 1 24 LINK OD1 ASP A 2 CA CA A 202 1555 1555 2.55 LINK OD1 ASP A 5 CA CA A 202 1555 1555 3.06 LINK OD2 ASP A 5 CA CA A 202 1555 1555 2.40 LINK OD1 ASP A 5 CA CA A 203 1555 1555 2.87 LINK OE1 GLU A 8 CA CA A 203 1555 1555 2.45 LINK NE2 HIS A 66 ZN ZN A 201 1555 1555 2.03 LINK ZN ZN A 201 NE2 HIS B 66 1555 1555 2.06 LINK ZN ZN A 201 NE2 HIS C 66 1555 1555 2.01 LINK CA CA A 202 O HOH A 313 1555 1555 3.01 LINK CA CA A 202 O HOH A 333 1555 1555 2.75 LINK CA CA A 202 O HOH B 385 1555 4545 2.54 LINK CA CA A 203 O HOH A 333 1555 1555 2.90 LINK CA CA A 203 O HOH A 370 1555 1555 2.41 LINK CA CA A 203 O HOH B 368 1555 4545 2.56 LINK OD2 ASP C 5 CA CA C 202 1555 2556 2.38 LINK OE1 GLU C 8 CA CA C 202 1555 1555 2.54 LINK OE2 GLU C 8 CA CA C 202 1555 1555 2.68 LINK OE1 GLU C 8 CA CA C 202 1555 2556 3.16 LINK CA CA C 202 O HOH C 303 1555 2556 3.14 CRYST1 95.040 77.410 47.420 90.00 107.03 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010522 0.000000 0.003223 0.00000 SCALE2 0.000000 0.012918 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022055 0.00000