HEADER IMMUNE SYSTEM 21-APR-23 8SLC TITLE HIGH AFFINITY NANOBODIES AGAINST GFP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LAG43; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 3 ORGANISM_TAXID: 6100; SOURCE 4 GENE: GFP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 9 ORGANISM_TAXID: 9844; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NANOBODY, NANOBODIES, GFP, GREEN FLUORESCENT PROTEIN, HIGH-AFFINITY KEYWDS 2 ANTIBODY VARIANT, ANTIBODY VARIANT, SINGLE-DOMAIN ANTIBODY, IMMUNE KEYWDS 3 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR N.E.KETAREN,M.P.ROUT,J.B.BONANNO,S.C.ALMO REVDAT 1 22-MAY-24 8SLC 0 JRNL AUTH N.E.KETAREN,M.P.ROUT,J.B.BONANNO,S.C.ALMO JRNL TITL HIGH AFFINITY NANOBODIES AGAINST GFP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 32995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1655 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9100 - 6.7900 0.97 2612 140 0.1950 0.1881 REMARK 3 2 6.7900 - 5.4000 0.98 2623 132 0.2025 0.2477 REMARK 3 3 5.3900 - 4.7100 0.99 2602 138 0.1755 0.2143 REMARK 3 4 4.7100 - 4.2800 0.99 2600 139 0.1741 0.1978 REMARK 3 5 4.2800 - 3.9800 0.99 2616 137 0.1993 0.2300 REMARK 3 6 3.9800 - 3.7400 0.99 2584 138 0.2418 0.2832 REMARK 3 7 3.7400 - 3.5500 0.99 2616 140 0.2421 0.2929 REMARK 3 8 3.5500 - 3.4000 0.99 2626 139 0.2601 0.2384 REMARK 3 9 3.4000 - 3.2700 1.00 2593 137 0.2897 0.3274 REMARK 3 10 3.2700 - 3.1600 1.00 2637 140 0.2945 0.3029 REMARK 3 11 3.1600 - 3.0600 1.00 2612 137 0.2935 0.3043 REMARK 3 12 3.0600 - 2.9700 1.00 2619 138 0.3139 0.2910 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5757 REMARK 3 ANGLE : 0.949 7782 REMARK 3 CHIRALITY : 0.047 821 REMARK 3 PLANARITY : 0.007 1009 REMARK 3 DIHEDRAL : 8.877 783 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SLC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-APR-23. REMARK 100 THE DEPOSITION ID IS D_1000272531. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0750 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78984 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.910 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.64700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.6, 2 M REMARK 280 SODIUM FORMATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.50650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.50650 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.50650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -74.71750 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 129.41451 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 74.71750 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 129.41451 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 232 REMARK 465 MET A 233 REMARK 465 ASP A 234 REMARK 465 GLU A 235 REMARK 465 LEU A 236 REMARK 465 TYR A 237 REMARK 465 LYS A 238 REMARK 465 GLY A 239 REMARK 465 LEU A 240 REMARK 465 GLU A 241 REMARK 465 VAL A 242 REMARK 465 LEU A 243 REMARK 465 PHE A 244 REMARK 465 GLN A 245 REMARK 465 GLY A 246 REMARK 465 PRO A 247 REMARK 465 SER A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 MET B 0 REMARK 465 GLY B 232 REMARK 465 MET B 233 REMARK 465 ASP B 234 REMARK 465 GLU B 235 REMARK 465 LEU B 236 REMARK 465 TYR B 237 REMARK 465 LYS B 238 REMARK 465 GLY B 239 REMARK 465 LEU B 240 REMARK 465 GLU B 241 REMARK 465 VAL B 242 REMARK 465 LEU B 243 REMARK 465 PHE B 244 REMARK 465 GLN B 245 REMARK 465 GLY B 246 REMARK 465 PRO B 247 REMARK 465 SER B 248 REMARK 465 HIS B 249 REMARK 465 HIS B 250 REMARK 465 HIS B 251 REMARK 465 HIS B 252 REMARK 465 HIS B 253 REMARK 465 HIS B 254 REMARK 465 GLY C -3 REMARK 465 SER C -2 REMARK 465 MET C -1 REMARK 465 ALA C 0 REMARK 465 LEU C 128 REMARK 465 GLU C 129 REMARK 465 VAL C 130 REMARK 465 LEU C 131 REMARK 465 PHE C 132 REMARK 465 GLN C 133 REMARK 465 GLY C 134 REMARK 465 PRO C 135 REMARK 465 SER C 136 REMARK 465 LEU C 137 REMARK 465 GLU C 138 REMARK 465 HIS C 139 REMARK 465 HIS C 140 REMARK 465 HIS C 141 REMARK 465 HIS C 142 REMARK 465 HIS C 143 REMARK 465 HIS C 144 REMARK 465 GLY D -3 REMARK 465 SER D -2 REMARK 465 MET D -1 REMARK 465 ALA D 0 REMARK 465 ASN D 74 REMARK 465 ALA D 75 REMARK 465 VAL D 130 REMARK 465 LEU D 131 REMARK 465 PHE D 132 REMARK 465 GLN D 133 REMARK 465 GLY D 134 REMARK 465 PRO D 135 REMARK 465 SER D 136 REMARK 465 LEU D 137 REMARK 465 GLU D 138 REMARK 465 HIS D 139 REMARK 465 HIS D 140 REMARK 465 HIS D 141 REMARK 465 HIS D 142 REMARK 465 HIS D 143 REMARK 465 HIS D 144 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 156 CD CE NZ REMARK 470 ASP C 1 CG OD1 OD2 REMARK 470 GLN D 13 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE B 64 H CR2 B 66 1.17 REMARK 500 O PHE B 64 H2 CR2 B 66 1.22 REMARK 500 O PHE A 64 H CR2 A 66 1.32 REMARK 500 C PHE B 64 H CR2 B 66 1.49 REMARK 500 C PHE A 64 H2 CR2 A 66 1.54 REMARK 500 O ASP C 73 H LYS C 76 1.58 REMARK 500 O TRP D 53 NH1 ARG D 72 2.09 REMARK 500 O TRP C 53 NH1 ARG C 72 2.09 REMARK 500 OE2 GLU B 213 NH1 ARG B 215 2.12 REMARK 500 OE2 GLU A 213 NH1 ARG A 215 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE C 29 CD1 PHE C 29 CE1 0.149 REMARK 500 PHE D 29 CD1 PHE D 29 CE1 0.148 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 158 CD - CE - NZ ANGL. DEV. = 30.8 DEGREES REMARK 500 LYS B 158 CD - CE - NZ ANGL. DEV. = 30.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 50 36.78 -88.87 REMARK 500 LYS A 158 -156.43 -82.43 REMARK 500 THR B 50 36.80 -88.87 REMARK 500 LYS B 158 -156.47 -81.63 REMARK 500 PRO C 14 154.65 -48.92 REMARK 500 ALA C 92 173.00 174.15 REMARK 500 PRO D 14 154.61 -48.62 REMARK 500 ALA D 92 173.00 174.20 REMARK 500 LEU D 128 46.60 -90.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE C 29 0.06 SIDE CHAIN REMARK 500 GLN C 119 0.08 SIDE CHAIN REMARK 500 PHE D 29 0.06 SIDE CHAIN REMARK 500 GLN D 119 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8SLC A 2 238 UNP P42212 GFP_AEQVI 2 238 DBREF 8SLC B 2 238 UNP P42212 GFP_AEQVI 2 238 DBREF 8SLC C -3 144 PDB 8SLC 8SLC -3 144 DBREF 8SLC D -3 144 PDB 8SLC 8SLC -3 144 SEQADV 8SLC MET A 0 UNP P42212 INITIATING METHIONINE SEQADV 8SLC ALA A 1 UNP P42212 EXPRESSION TAG SEQADV 8SLC CR2 A 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 8SLC CR2 A 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 8SLC CR2 A 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 8SLC ALA A 72 UNP P42212 SER 72 CONFLICT SEQADV 8SLC HIS A 177 UNP P42212 GLN 177 CONFLICT SEQADV 8SLC GLY A 239 UNP P42212 EXPRESSION TAG SEQADV 8SLC LEU A 240 UNP P42212 EXPRESSION TAG SEQADV 8SLC GLU A 241 UNP P42212 EXPRESSION TAG SEQADV 8SLC VAL A 242 UNP P42212 EXPRESSION TAG SEQADV 8SLC LEU A 243 UNP P42212 EXPRESSION TAG SEQADV 8SLC PHE A 244 UNP P42212 EXPRESSION TAG SEQADV 8SLC GLN A 245 UNP P42212 EXPRESSION TAG SEQADV 8SLC GLY A 246 UNP P42212 EXPRESSION TAG SEQADV 8SLC PRO A 247 UNP P42212 EXPRESSION TAG SEQADV 8SLC SER A 248 UNP P42212 EXPRESSION TAG SEQADV 8SLC HIS A 249 UNP P42212 EXPRESSION TAG SEQADV 8SLC HIS A 250 UNP P42212 EXPRESSION TAG SEQADV 8SLC HIS A 251 UNP P42212 EXPRESSION TAG SEQADV 8SLC HIS A 252 UNP P42212 EXPRESSION TAG SEQADV 8SLC HIS A 253 UNP P42212 EXPRESSION TAG SEQADV 8SLC HIS A 254 UNP P42212 EXPRESSION TAG SEQADV 8SLC MET B 0 UNP P42212 INITIATING METHIONINE SEQADV 8SLC ALA B 1 UNP P42212 EXPRESSION TAG SEQADV 8SLC CR2 B 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 8SLC CR2 B 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 8SLC CR2 B 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 8SLC ALA B 72 UNP P42212 SER 72 CONFLICT SEQADV 8SLC HIS B 177 UNP P42212 GLN 177 CONFLICT SEQADV 8SLC GLY B 239 UNP P42212 EXPRESSION TAG SEQADV 8SLC LEU B 240 UNP P42212 EXPRESSION TAG SEQADV 8SLC GLU B 241 UNP P42212 EXPRESSION TAG SEQADV 8SLC VAL B 242 UNP P42212 EXPRESSION TAG SEQADV 8SLC LEU B 243 UNP P42212 EXPRESSION TAG SEQADV 8SLC PHE B 244 UNP P42212 EXPRESSION TAG SEQADV 8SLC GLN B 245 UNP P42212 EXPRESSION TAG SEQADV 8SLC GLY B 246 UNP P42212 EXPRESSION TAG SEQADV 8SLC PRO B 247 UNP P42212 EXPRESSION TAG SEQADV 8SLC SER B 248 UNP P42212 EXPRESSION TAG SEQADV 8SLC HIS B 249 UNP P42212 EXPRESSION TAG SEQADV 8SLC HIS B 250 UNP P42212 EXPRESSION TAG SEQADV 8SLC HIS B 251 UNP P42212 EXPRESSION TAG SEQADV 8SLC HIS B 252 UNP P42212 EXPRESSION TAG SEQADV 8SLC HIS B 253 UNP P42212 EXPRESSION TAG SEQADV 8SLC HIS B 254 UNP P42212 EXPRESSION TAG SEQRES 1 A 253 MET ALA SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL SEQRES 2 A 253 PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS SEQRES 3 A 253 LYS PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR SEQRES 4 A 253 TYR GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY SEQRES 5 A 253 LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR PHE SEQRES 6 A 253 CR2 VAL GLN CYS PHE ALA ARG TYR PRO ASP HIS MET LYS SEQRES 7 A 253 GLN HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR SEQRES 8 A 253 VAL GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN SEQRES 9 A 253 TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR SEQRES 10 A 253 LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS SEQRES 11 A 253 GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN SEQRES 12 A 253 TYR ASN SER HIS ASN VAL TYR ILE MET ALA ASP LYS GLN SEQRES 13 A 253 LYS ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG HIS ASN SEQRES 14 A 253 ILE GLU ASP GLY SER VAL HIS LEU ALA ASP HIS TYR GLN SEQRES 15 A 253 GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO SEQRES 16 A 253 ASP ASN HIS TYR LEU SER THR GLN SER ALA LEU SER LYS SEQRES 17 A 253 ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU SEQRES 18 A 253 PHE VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU SEQRES 19 A 253 LEU TYR LYS GLY LEU GLU VAL LEU PHE GLN GLY PRO SER SEQRES 20 A 253 HIS HIS HIS HIS HIS HIS SEQRES 1 B 253 MET ALA SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL SEQRES 2 B 253 PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS SEQRES 3 B 253 LYS PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR SEQRES 4 B 253 TYR GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY SEQRES 5 B 253 LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR PHE SEQRES 6 B 253 CR2 VAL GLN CYS PHE ALA ARG TYR PRO ASP HIS MET LYS SEQRES 7 B 253 GLN HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR SEQRES 8 B 253 VAL GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN SEQRES 9 B 253 TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR SEQRES 10 B 253 LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS SEQRES 11 B 253 GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN SEQRES 12 B 253 TYR ASN SER HIS ASN VAL TYR ILE MET ALA ASP LYS GLN SEQRES 13 B 253 LYS ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG HIS ASN SEQRES 14 B 253 ILE GLU ASP GLY SER VAL HIS LEU ALA ASP HIS TYR GLN SEQRES 15 B 253 GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO SEQRES 16 B 253 ASP ASN HIS TYR LEU SER THR GLN SER ALA LEU SER LYS SEQRES 17 B 253 ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU SEQRES 18 B 253 PHE VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU SEQRES 19 B 253 LEU TYR LYS GLY LEU GLU VAL LEU PHE GLN GLY PRO SER SEQRES 20 B 253 HIS HIS HIS HIS HIS HIS SEQRES 1 C 148 GLY SER MET ALA ASP VAL GLN LEU VAL GLU SER GLY GLY SEQRES 2 C 148 GLY LEU VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS SEQRES 3 C 148 GLU ALA SER GLY GLY ALA PHE SER THR VAL ALA MET GLY SEQRES 4 C 148 TRP PHE ARG GLN ALA PRO GLY LYS GLU ARG GLU PHE VAL SEQRES 5 C 148 GLY ALA ILE THR TRP THR ALA GLY SER THR TYR TYR ALA SEQRES 6 C 148 ASP SER ALA LYS GLY ARG PHE THR ILE SER ARG ASP ASN SEQRES 7 C 148 ALA LYS ASN THR VAL HIS LEU GLN MET ASN SER LEU LYS SEQRES 8 C 148 PRO GLU ASP THR ALA VAL TYR TYR CYS ALA GLN ARG VAL SEQRES 9 C 148 ARG GLY PHE PHE GLY PRO LEU ARG THR THR PRO SER TRP SEQRES 10 C 148 TYR GLU TYR TRP GLY GLN GLY THR GLN VAL THR VAL SER SEQRES 11 C 148 GLY LEU GLU VAL LEU PHE GLN GLY PRO SER LEU GLU HIS SEQRES 12 C 148 HIS HIS HIS HIS HIS SEQRES 1 D 148 GLY SER MET ALA ASP VAL GLN LEU VAL GLU SER GLY GLY SEQRES 2 D 148 GLY LEU VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS SEQRES 3 D 148 GLU ALA SER GLY GLY ALA PHE SER THR VAL ALA MET GLY SEQRES 4 D 148 TRP PHE ARG GLN ALA PRO GLY LYS GLU ARG GLU PHE VAL SEQRES 5 D 148 GLY ALA ILE THR TRP THR ALA GLY SER THR TYR TYR ALA SEQRES 6 D 148 ASP SER ALA LYS GLY ARG PHE THR ILE SER ARG ASP ASN SEQRES 7 D 148 ALA LYS ASN THR VAL HIS LEU GLN MET ASN SER LEU LYS SEQRES 8 D 148 PRO GLU ASP THR ALA VAL TYR TYR CYS ALA GLN ARG VAL SEQRES 9 D 148 ARG GLY PHE PHE GLY PRO LEU ARG THR THR PRO SER TRP SEQRES 10 D 148 TYR GLU TYR TRP GLY GLN GLY THR GLN VAL THR VAL SER SEQRES 11 D 148 GLY LEU GLU VAL LEU PHE GLN GLY PRO SER LEU GLU HIS SEQRES 12 D 148 HIS HIS HIS HIS HIS MODRES 8SLC CR2 A 66 SER CHROMOPHORE MODRES 8SLC CR2 A 66 TYR CHROMOPHORE MODRES 8SLC CR2 A 66 GLY CHROMOPHORE MODRES 8SLC CR2 B 66 SER CHROMOPHORE MODRES 8SLC CR2 B 66 TYR CHROMOPHORE MODRES 8SLC CR2 B 66 GLY CHROMOPHORE HET CR2 A 66 31 HET CR2 B 66 31 HET GOL A 301 13 HET CL A 302 1 HET NA A 303 1 HET GOL B 301 13 HET GOL B 302 13 HET GOL C 201 12 HET CL C 202 1 HET CL C 203 1 HET CL D 201 1 HETNAM CR2 {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]- HETNAM 2 CR2 5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN CR2 CHROMOPHORE (GLY-TYR-GLY) HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CR2 2(C13 H13 N3 O4) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 6 CL 4(CL 1-) FORMUL 7 NA NA 1+ FORMUL 14 HOH *9(H2 O) HELIX 1 AA1 LYS A 3 THR A 9 5 7 HELIX 2 AA2 PRO A 56 VAL A 61 5 6 HELIX 3 AA3 VAL A 68 ALA A 72 5 5 HELIX 4 AA4 PRO A 75 HIS A 81 5 7 HELIX 5 AA5 ASP A 82 ALA A 87 1 6 HELIX 6 AA6 LYS B 3 THR B 9 5 7 HELIX 7 AA7 PRO B 56 VAL B 61 5 6 HELIX 8 AA8 VAL B 68 ALA B 72 5 5 HELIX 9 AA9 PRO B 75 HIS B 81 5 7 HELIX 10 AB1 ASP B 82 ALA B 87 1 6 HELIX 11 AB2 ASP C 62 LYS C 65 5 4 HELIX 12 AB3 LYS C 87 THR C 91 5 5 HELIX 13 AB4 THR C 110 TYR C 114 5 5 HELIX 14 AB5 ASP D 62 LYS D 65 5 4 HELIX 15 AB6 LYS D 87 THR D 91 5 5 HELIX 16 AB7 THR D 110 TYR D 114 5 5 SHEET 1 AA112 VAL A 11 VAL A 22 0 SHEET 2 AA112 HIS A 25 ASP A 36 -1 O GLY A 31 N VAL A 16 SHEET 3 AA112 LYS A 41 CYS A 48 -1 O LYS A 41 N ASP A 36 SHEET 4 AA112 HIS A 217 ALA A 227 -1 O MET A 218 N PHE A 46 SHEET 5 AA112 HIS A 199 SER A 208 -1 N SER A 202 O THR A 225 SHEET 6 AA112 HIS A 148 ASP A 155 -1 N HIS A 148 O THR A 203 SHEET 7 AA112 GLY A 160 ASN A 170 -1 O LYS A 162 N MET A 153 SHEET 8 AA112 VAL A 176 PRO A 187 -1 O GLN A 183 N VAL A 163 SHEET 9 AA112 TYR A 92 PHE A 100 -1 N VAL A 93 O THR A 186 SHEET 10 AA112 ASN A 105 PHE A 114 -1 O THR A 108 N ARG A 96 SHEET 11 AA112 LEU A 119 ILE A 128 -1 O VAL A 120 N LYS A 113 SHEET 12 AA112 VAL A 11 VAL A 22 1 N ASP A 21 O GLY A 127 SHEET 1 AA212 VAL B 11 VAL B 22 0 SHEET 2 AA212 HIS B 25 ASP B 36 -1 O GLY B 31 N VAL B 16 SHEET 3 AA212 LYS B 41 CYS B 48 -1 O LYS B 41 N ASP B 36 SHEET 4 AA212 HIS B 217 ALA B 227 -1 O MET B 218 N PHE B 46 SHEET 5 AA212 HIS B 199 SER B 208 -1 N SER B 202 O THR B 225 SHEET 6 AA212 HIS B 148 ASP B 155 -1 N HIS B 148 O THR B 203 SHEET 7 AA212 GLY B 160 ASN B 170 -1 O LYS B 162 N MET B 153 SHEET 8 AA212 VAL B 176 PRO B 187 -1 O GLN B 183 N VAL B 163 SHEET 9 AA212 TYR B 92 PHE B 100 -1 N VAL B 93 O THR B 186 SHEET 10 AA212 ASN B 105 PHE B 114 -1 O THR B 108 N ARG B 96 SHEET 11 AA212 LEU B 119 ILE B 128 -1 O VAL B 120 N LYS B 113 SHEET 12 AA212 VAL B 11 VAL B 22 1 N ASP B 21 O GLY B 127 SHEET 1 AA3 4 VAL C 2 SER C 7 0 SHEET 2 AA3 4 LEU C 18 GLY C 26 -1 O SER C 21 N SER C 7 SHEET 3 AA3 4 THR C 78 MET C 83 -1 O MET C 83 N LEU C 18 SHEET 4 AA3 4 PHE C 68 ARG C 72 -1 N THR C 69 O GLN C 82 SHEET 1 AA4 6 GLY C 10 VAL C 12 0 SHEET 2 AA4 6 THR C 121 VAL C 125 1 O GLN C 122 N GLY C 10 SHEET 3 AA4 6 ALA C 92 ARG C 99 -1 N TYR C 94 O THR C 121 SHEET 4 AA4 6 ALA C 33 GLN C 39 -1 N GLY C 35 O ALA C 97 SHEET 5 AA4 6 GLU C 46 THR C 52 -1 O GLY C 49 N TRP C 36 SHEET 6 AA4 6 THR C 58 TYR C 60 -1 O TYR C 59 N ALA C 50 SHEET 1 AA5 4 GLY C 10 VAL C 12 0 SHEET 2 AA5 4 THR C 121 VAL C 125 1 O GLN C 122 N GLY C 10 SHEET 3 AA5 4 ALA C 92 ARG C 99 -1 N TYR C 94 O THR C 121 SHEET 4 AA5 4 TYR C 116 TRP C 117 -1 O TYR C 116 N GLN C 98 SHEET 1 AA6 4 GLN D 3 SER D 7 0 SHEET 2 AA6 4 LEU D 18 SER D 25 -1 O SER D 21 N SER D 7 SHEET 3 AA6 4 THR D 78 MET D 83 -1 O MET D 83 N LEU D 18 SHEET 4 AA6 4 PHE D 68 ARG D 72 -1 N THR D 69 O GLN D 82 SHEET 1 AA7 6 GLY D 10 VAL D 12 0 SHEET 2 AA7 6 THR D 121 VAL D 125 1 O GLN D 122 N GLY D 10 SHEET 3 AA7 6 ALA D 92 ARG D 99 -1 N TYR D 94 O THR D 121 SHEET 4 AA7 6 ALA D 33 GLN D 39 -1 N GLY D 35 O ALA D 97 SHEET 5 AA7 6 GLU D 46 THR D 52 -1 O GLY D 49 N TRP D 36 SHEET 6 AA7 6 THR D 58 TYR D 60 -1 O TYR D 59 N ALA D 50 SHEET 1 AA8 4 GLY D 10 VAL D 12 0 SHEET 2 AA8 4 THR D 121 VAL D 125 1 O GLN D 122 N GLY D 10 SHEET 3 AA8 4 ALA D 92 ARG D 99 -1 N TYR D 94 O THR D 121 SHEET 4 AA8 4 TYR D 116 TRP D 117 -1 O TYR D 116 N GLN D 98 SSBOND 1 CYS C 22 CYS C 96 1555 1555 2.04 SSBOND 2 CYS D 22 CYS D 96 1555 1555 2.04 LINK C PHE A 64 N1 CR2 A 66 1555 1555 1.44 LINK O PHE A 64 N1 CR2 A 66 1555 1555 1.31 LINK C3 CR2 A 66 N VAL A 68 1555 1555 1.43 LINK C PHE B 64 N1 CR2 B 66 1555 1555 1.44 LINK O PHE B 64 N1 CR2 B 66 1555 1555 1.31 LINK C3 CR2 B 66 N VAL B 68 1555 1555 1.43 LINK OD1 ASN A 146 NA NA A 303 1555 1555 2.93 CISPEP 1 MET A 88 PRO A 89 0 2.87 CISPEP 2 MET B 88 PRO B 89 0 2.82 CISPEP 3 ASP D 1 VAL D 2 0 -4.57 CRYST1 149.435 149.435 127.013 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006692 0.003864 0.000000 0.00000 SCALE2 0.000000 0.007727 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007873 0.00000