HEADER LIGASE 21-APR-23 8SLH TITLE CRYSTAL STRUCTURE OF GLYCINE TRNA LIGASE FROM MYCOBACTERIUM TITLE 2 THERMORESISTIBILE (AMP BOUND, HEXAGONAL FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM THERMORESISTIBILE ATCC 19527; SOURCE 3 ORGANISM_TAXID: 1078020; SOURCE 4 GENE: GLYQS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: MYTHA.19107.A.A1 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 22-MAY-24 8SLH 1 REMARK REVDAT 1 03-MAY-23 8SLH 0 JRNL AUTH S.LOVELL,L.LIU,K.P.BATTAILE,S.SEIBOLD JRNL TITL CRYSTAL STRUCTURE OF GLYCINE TRNA LIGASE FROM MYCOBACTERIUM JRNL TITL 2 THERMORESISTIBILE (AMP BOUND, HEXAGONAL FORM) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21RC1_4932: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.150 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 11941 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5500 - 4.8400 1.00 2972 169 0.2202 0.2766 REMARK 3 2 4.8400 - 3.8400 1.00 2836 133 0.2083 0.2745 REMARK 3 3 3.8400 - 3.3600 1.00 2787 144 0.2621 0.3115 REMARK 3 4 3.3600 - 3.0500 1.00 2754 146 0.3104 0.3522 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3027 REMARK 3 ANGLE : 0.525 4110 REMARK 3 CHIRALITY : 0.041 443 REMARK 3 PLANARITY : 0.005 529 REMARK 3 DIHEDRAL : 11.412 1106 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.3503 31.3676 0.0298 REMARK 3 T TENSOR REMARK 3 T11: 0.7021 T22: 0.8666 REMARK 3 T33: 0.5234 T12: -0.0379 REMARK 3 T13: -0.0667 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 3.1830 L22: 5.4109 REMARK 3 L33: 3.7777 L12: -2.4751 REMARK 3 L13: -0.5998 L23: 0.1554 REMARK 3 S TENSOR REMARK 3 S11: 0.0636 S12: 0.1030 S13: -0.2012 REMARK 3 S21: 0.0468 S22: 0.1328 S23: 0.6231 REMARK 3 S31: 0.3062 S32: -0.6750 S33: -0.1453 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 265 THROUGH 341 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7870 36.9724 -3.2365 REMARK 3 T TENSOR REMARK 3 T11: 0.7936 T22: 1.0502 REMARK 3 T33: 0.5582 T12: -0.0217 REMARK 3 T13: -0.0864 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 4.2064 L22: 4.4421 REMARK 3 L33: 3.1986 L12: -2.5175 REMARK 3 L13: -0.7022 L23: -0.8886 REMARK 3 S TENSOR REMARK 3 S11: 0.2519 S12: 0.2177 S13: 0.1040 REMARK 3 S21: -0.1290 S22: 0.0135 S23: 0.3680 REMARK 3 S31: 0.4707 S32: -0.7041 S33: -0.2272 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 342 THROUGH 459 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.4239 21.9581 1.2643 REMARK 3 T TENSOR REMARK 3 T11: 1.0454 T22: 1.0943 REMARK 3 T33: 0.8169 T12: 0.2148 REMARK 3 T13: 0.1300 T23: 0.1010 REMARK 3 L TENSOR REMARK 3 L11: 4.5726 L22: 5.0808 REMARK 3 L33: 3.4357 L12: -0.3486 REMARK 3 L13: 0.2612 L23: -0.3722 REMARK 3 S TENSOR REMARK 3 S11: 0.1904 S12: 0.3437 S13: -0.1618 REMARK 3 S21: 0.0001 S22: -0.5490 S23: -0.7585 REMARK 3 S31: 0.6877 S32: 0.8095 S33: 0.2939 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SLH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-23. REMARK 100 THE DEPOSITION ID IS D_1000274014. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : ' REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12003 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 44.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.60 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 20.90 REMARK 200 R MERGE FOR SHELL (I) : 1.78900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: JCSG+ H8: 25% (W/V) PEG 3350, 0.2M REMARK 280 NACL, 0.1M BIS-TRIS PH 5.5, MYTHA.19107.A.A1.PW39162 AT 17 MG/ REMARK 280 ML. PLATE: CLOVER 1/12/2023 AMP, H10. PUCK: PSL-1508, CRYO: 15% REMARK 280 PEG200 + 85% CRYSTALLANT. 2MM AMP ADDED PRIOR TO REMARK 280 CRYSTALLIZATION., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.63200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.26400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.94800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 106.58000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.31600 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.63200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 85.26400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 106.58000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 63.94800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.31600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 21.31600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 TYR A 25 REMARK 465 GLY A 26 REMARK 465 GLY A 27 REMARK 465 GLY A 78 REMARK 465 HIS A 79 REMARK 465 VAL A 80 REMARK 465 ASP A 81 REMARK 465 VAL A 82 REMARK 465 PHE A 83 REMARK 465 HIS A 84 REMARK 465 ASP A 85 REMARK 465 PRO A 86 REMARK 465 LEU A 87 REMARK 465 VAL A 88 REMARK 465 GLU A 89 REMARK 465 CYS A 90 REMARK 465 LEU A 91 REMARK 465 ASN A 92 REMARK 465 CYS A 93 REMARK 465 HIS A 94 REMARK 465 ARG A 95 REMARK 465 ARG A 96 REMARK 465 HIS A 97 REMARK 465 ARG A 98 REMARK 465 GLN A 99 REMARK 465 ASP A 100 REMARK 465 HIS A 101 REMARK 465 LEU A 102 REMARK 465 GLN A 103 REMARK 465 GLU A 104 REMARK 465 ALA A 105 REMARK 465 LEU A 106 REMARK 465 ALA A 107 REMARK 465 GLY A 108 REMARK 465 LYS A 109 REMARK 465 LYS A 110 REMARK 465 GLY A 111 REMARK 465 LEU A 112 REMARK 465 ASP A 113 REMARK 465 ASN A 114 REMARK 465 PRO A 115 REMARK 465 ASP A 116 REMARK 465 ASP A 117 REMARK 465 VAL A 118 REMARK 465 PRO A 119 REMARK 465 MET A 120 REMARK 465 ASP A 121 REMARK 465 GLU A 122 REMARK 465 VAL A 123 REMARK 465 VAL A 124 REMARK 465 CYS A 125 REMARK 465 PRO A 126 REMARK 465 ASP A 127 REMARK 465 CYS A 128 REMARK 465 GLY A 129 REMARK 465 THR A 130 REMARK 465 LYS A 131 REMARK 465 GLY A 132 REMARK 465 ARG A 133 REMARK 465 TRP A 134 REMARK 465 THR A 135 REMARK 465 GLU A 136 REMARK 465 PRO A 137 REMARK 465 ARG A 138 REMARK 465 GLU A 139 REMARK 465 PHE A 140 REMARK 465 ASN A 141 REMARK 465 MET A 142 REMARK 465 MET A 143 REMARK 465 LEU A 144 REMARK 465 LYS A 145 REMARK 465 THR A 146 REMARK 465 TYR A 147 REMARK 465 LEU A 148 REMARK 465 GLY A 149 REMARK 465 PRO A 150 REMARK 465 ILE A 151 REMARK 465 GLU A 152 REMARK 465 SER A 153 REMARK 465 ASP A 154 REMARK 465 GLU A 155 REMARK 465 TYR A 159 REMARK 465 LEU A 160 REMARK 465 ARG A 195 REMARK 465 ASN A 196 REMARK 465 GLU A 197 REMARK 465 ILE A 198 REMARK 465 THR A 199 REMARK 465 GLU A 343 REMARK 465 ALA A 344 REMARK 465 PRO A 345 REMARK 465 ASN A 346 REMARK 465 ALA A 347 REMARK 465 LYS A 348 REMARK 465 GLY A 349 REMARK 465 GLY A 350 REMARK 465 GLY A 460 REMARK 465 CYS A 461 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 206 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 353 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 29 -33.31 72.24 REMARK 500 VAL A 54 -66.43 -99.77 REMARK 500 PHE A 203 -110.02 62.03 REMARK 500 LEU A 283 -38.73 -134.15 REMARK 500 THR A 290 -148.33 51.63 REMARK 500 ARG A 437 -72.22 -48.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 54 O REMARK 620 2 ARG A 57 O 67.3 REMARK 620 N 1 DBREF 8SLH A 1 461 UNP G7CIG9 G7CIG9_MYCT3 1 461 SEQADV 8SLH MET A -20 UNP G7CIG9 INITIATING METHIONINE SEQADV 8SLH ALA A -19 UNP G7CIG9 EXPRESSION TAG SEQADV 8SLH HIS A -18 UNP G7CIG9 EXPRESSION TAG SEQADV 8SLH HIS A -17 UNP G7CIG9 EXPRESSION TAG SEQADV 8SLH HIS A -16 UNP G7CIG9 EXPRESSION TAG SEQADV 8SLH HIS A -15 UNP G7CIG9 EXPRESSION TAG SEQADV 8SLH HIS A -14 UNP G7CIG9 EXPRESSION TAG SEQADV 8SLH HIS A -13 UNP G7CIG9 EXPRESSION TAG SEQADV 8SLH MET A -12 UNP G7CIG9 EXPRESSION TAG SEQADV 8SLH GLY A -11 UNP G7CIG9 EXPRESSION TAG SEQADV 8SLH THR A -10 UNP G7CIG9 EXPRESSION TAG SEQADV 8SLH LEU A -9 UNP G7CIG9 EXPRESSION TAG SEQADV 8SLH GLU A -8 UNP G7CIG9 EXPRESSION TAG SEQADV 8SLH ALA A -7 UNP G7CIG9 EXPRESSION TAG SEQADV 8SLH GLN A -6 UNP G7CIG9 EXPRESSION TAG SEQADV 8SLH THR A -5 UNP G7CIG9 EXPRESSION TAG SEQADV 8SLH GLN A -4 UNP G7CIG9 EXPRESSION TAG SEQADV 8SLH GLY A -3 UNP G7CIG9 EXPRESSION TAG SEQADV 8SLH PRO A -2 UNP G7CIG9 EXPRESSION TAG SEQADV 8SLH GLY A -1 UNP G7CIG9 EXPRESSION TAG SEQADV 8SLH SER A 0 UNP G7CIG9 EXPRESSION TAG SEQRES 1 A 482 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 482 ALA GLN THR GLN GLY PRO GLY SER MET ALA SER ILE ILE SEQRES 3 A 482 ASP THR VAL ALA ASN LEU ALA LYS ARG ARG GLY PHE VAL SEQRES 4 A 482 TYR GLN SER GLY GLU ILE TYR GLY GLY THR ARG SER ALA SEQRES 5 A 482 TRP ASP TYR GLY PRO LEU GLY VAL GLU LEU LYS GLU ASN SEQRES 6 A 482 ILE LYS ARG GLN TRP TRP LYS SER MET VAL THR ALA ARG SEQRES 7 A 482 GLU ASP VAL VAL GLY ILE ASP THR SER ILE ILE LEU PRO SEQRES 8 A 482 ARG GLU VAL TRP VAL ALA SER GLY HIS VAL ASP VAL PHE SEQRES 9 A 482 HIS ASP PRO LEU VAL GLU CYS LEU ASN CYS HIS ARG ARG SEQRES 10 A 482 HIS ARG GLN ASP HIS LEU GLN GLU ALA LEU ALA GLY LYS SEQRES 11 A 482 LYS GLY LEU ASP ASN PRO ASP ASP VAL PRO MET ASP GLU SEQRES 12 A 482 VAL VAL CYS PRO ASP CYS GLY THR LYS GLY ARG TRP THR SEQRES 13 A 482 GLU PRO ARG GLU PHE ASN MET MET LEU LYS THR TYR LEU SEQRES 14 A 482 GLY PRO ILE GLU SER ASP GLU GLY LEU HIS TYR LEU ARG SEQRES 15 A 482 PRO GLU THR ALA GLN GLY ILE PHE THR ASN PHE ALA ASN SEQRES 16 A 482 VAL VAL THR THR ALA ARG LYS LYS PRO PRO PHE GLY ILE SEQRES 17 A 482 ALA GLN THR GLY LYS SER PHE ARG ASN GLU ILE THR PRO SEQRES 18 A 482 GLY ASN PHE ILE PHE ARG THR ARG GLU PHE GLU GLN MET SEQRES 19 A 482 GLU MET GLU PHE PHE VAL GLU PRO SER THR ALA LYS GLU SEQRES 20 A 482 TRP HIS GLN TYR TRP ILE ASP THR ARG LEU GLN TRP TYR SEQRES 21 A 482 VAL ASP LEU GLY ILE ASP ARG ASP ASN LEU ARG LEU TYR SEQRES 22 A 482 GLU HIS PRO PRO GLU LYS LEU SER HIS TYR ALA GLU ARG SEQRES 23 A 482 THR VAL ASP ILE GLU TYR LYS TYR GLY PHE ALA GLY ASP SEQRES 24 A 482 PRO TRP GLY GLU LEU GLU GLY ILE ALA ASN ARG THR ASP SEQRES 25 A 482 PHE ASP LEU SER THR HIS SER LYS HIS SER GLY VAL ASP SEQRES 26 A 482 LEU SER TYR TYR ASP GLN ALA THR ASP THR ARG TYR VAL SEQRES 27 A 482 PRO TYR VAL ILE GLU PRO ALA ALA GLY LEU THR ARG SER SEQRES 28 A 482 LEU MET ALA PHE LEU ILE ASP ALA TYR SER GLU ASP GLU SEQRES 29 A 482 ALA PRO ASN ALA LYS GLY GLY VAL ASP LYS ARG THR VAL SEQRES 30 A 482 LEU ARG PHE ASP PRO ARG LEU ALA PRO VAL LYS VAL ALA SEQRES 31 A 482 VAL LEU PRO LEU SER ARG HIS ALA ASP LEU SER PRO LYS SEQRES 32 A 482 ALA ARG ASP LEU ALA ALA GLU LEU ARG GLN HIS TRP ASN SEQRES 33 A 482 VAL GLU PHE ASP ASP ALA GLY ALA ILE GLY ARG ARG TYR SEQRES 34 A 482 ARG ARG GLN ASP GLU VAL GLY THR PRO TYR CYS VAL THR SEQRES 35 A 482 VAL ASP PHE ASP SER LEU GLU ASP ASN ALA VAL THR VAL SEQRES 36 A 482 ARG GLU ARG ASP SER MET ALA GLN GLU ARG ILE SER ILE SEQRES 37 A 482 ASP GLN VAL THR ASP TYR LEU ALA VAL ARG LEU LYS GLY SEQRES 38 A 482 CYS HET AMP A 501 23 HET MG A 502 1 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 MG MG 2+ HELIX 1 AA1 SER A 3 ARG A 15 1 13 HELIX 2 AA2 GLY A 35 VAL A 54 1 20 HELIX 3 AA3 PRO A 70 SER A 77 1 8 HELIX 4 AA4 THR A 164 ASN A 171 1 8 HELIX 5 AA5 ASN A 171 ALA A 179 1 9 HELIX 6 AA6 GLU A 220 SER A 222 5 3 HELIX 7 AA7 THR A 223 LEU A 242 1 20 HELIX 8 AA8 ASP A 245 ASP A 247 5 3 HELIX 9 AA9 PRO A 255 LEU A 259 5 5 HELIX 10 AB1 ASP A 291 GLY A 302 1 12 HELIX 11 AB2 LEU A 327 ALA A 338 1 12 HELIX 12 AB3 ASP A 360 ALA A 364 5 5 HELIX 13 AB4 ASP A 378 GLN A 392 1 15 HELIX 14 AB5 ALA A 403 VAL A 414 1 12 HELIX 15 AB6 ASP A 425 ASN A 430 1 6 HELIX 16 AB7 ILE A 447 LYS A 459 1 13 SHEET 1 AA1 2 TYR A 19 GLN A 20 0 SHEET 2 AA1 2 TRP A 32 ASP A 33 -1 O ASP A 33 N TYR A 19 SHEET 1 AA2 7 VAL A 60 GLY A 62 0 SHEET 2 AA2 7 PHE A 185 SER A 193 1 O ALA A 188 N VAL A 61 SHEET 3 AA2 7 PHE A 210 VAL A 219 -1 O GLN A 212 N GLY A 191 SHEET 4 AA2 7 TYR A 319 GLY A 326 -1 O ILE A 321 N PHE A 217 SHEET 5 AA2 7 TRP A 280 ASN A 288 -1 N ALA A 287 O GLU A 322 SHEET 6 AA2 7 ARG A 265 LYS A 272 -1 N ILE A 269 O GLU A 284 SHEET 7 AA2 7 LEU A 249 GLU A 253 -1 N ARG A 250 O GLU A 270 SHEET 1 AA3 2 TYR A 307 ASP A 309 0 SHEET 2 AA3 2 THR A 314 TYR A 316 -1 O TYR A 316 N TYR A 307 SHEET 1 AA4 2 TYR A 339 GLU A 341 0 SHEET 2 AA4 2 THR A 355 LEU A 357 -1 O VAL A 356 N SER A 340 SHEET 1 AA5 5 VAL A 396 PHE A 398 0 SHEET 2 AA5 5 VAL A 368 PRO A 372 1 N VAL A 370 O GLU A 397 SHEET 3 AA5 5 TYR A 418 VAL A 422 1 O VAL A 420 N ALA A 369 SHEET 4 AA5 5 ALA A 431 GLU A 436 -1 O THR A 433 N THR A 421 SHEET 5 AA5 5 GLN A 442 SER A 446 -1 O GLU A 443 N VAL A 434 LINK O VAL A 54 MG MG A 502 1555 1555 2.59 LINK O ARG A 57 MG MG A 502 1555 1555 2.76 CISPEP 1 PRO A 183 PRO A 184 0 1.57 CRYST1 126.254 126.254 127.896 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007921 0.004573 0.000000 0.00000 SCALE2 0.000000 0.009146 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007819 0.00000