HEADER CYTOKINE 24-APR-23 8SLR TITLE CRYSTAL STRUCTURE OF MOUSE TRAIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 10; COMPND 3 CHAIN: D; COMPND 4 SYNONYM: TNF-RELATED APOPTOSIS-INDUCING LIGAND,PROTEIN TRAIL; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TNFSF10, TRAIL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI-B; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET21B KEYWDS TRAIL, APOPTOSIS, PRO-APOPTOTIC, TNF SUPERFAMILY, CYTOKINE EXPDTA X-RAY DIFFRACTION AUTHOR L.C.PEDERSEN,D.XU REVDAT 1 03-APR-24 8SLR 0 JRNL AUTH Y.LUO,H.HAO,Z.WANG,C.Y.ONG,R.DUTCHER,Y.XU,J.LIU, JRNL AUTH 2 L.C.PEDERSEN,D.XU JRNL TITL HEPARAN SULFATE PROMOTES TRAIL-INDUCED TUMOR CELL APOPTOSIS. JRNL REF ELIFE V. 12 2024 JRNL REFN ESSN 2050-084X JRNL PMID 38265424 JRNL DOI 10.7554/ELIFE.90192 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 21811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1089 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.4300 - 4.8000 0.99 2797 146 0.1685 0.2149 REMARK 3 2 4.8000 - 3.8100 1.00 2645 140 0.1187 0.1420 REMARK 3 3 3.8100 - 3.3300 1.00 2606 136 0.1517 0.1725 REMARK 3 4 3.3300 - 3.0200 0.99 2557 133 0.1595 0.1771 REMARK 3 5 3.0200 - 2.8100 0.99 2564 136 0.1875 0.1866 REMARK 3 6 2.8100 - 2.6400 0.99 2523 135 0.1822 0.1842 REMARK 3 7 2.6400 - 2.5100 0.99 2512 130 0.1959 0.2166 REMARK 3 8 2.5100 - 2.4000 0.98 2518 133 0.2323 0.2439 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.192 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.955 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1358 REMARK 3 ANGLE : 0.816 1837 REMARK 3 CHIRALITY : 0.057 193 REMARK 3 PLANARITY : 0.008 238 REMARK 3 DIHEDRAL : 14.644 498 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 124 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0682 28.3557 9.8988 REMARK 3 T TENSOR REMARK 3 T11: 0.3663 T22: 0.2227 REMARK 3 T33: 0.3127 T12: -0.0022 REMARK 3 T13: 0.0947 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 2.9442 L22: 6.1138 REMARK 3 L33: 9.5124 L12: -0.6872 REMARK 3 L13: 3.3392 L23: -0.1852 REMARK 3 S TENSOR REMARK 3 S11: 0.4175 S12: 0.4811 S13: 0.4947 REMARK 3 S21: 0.3469 S22: -0.1825 S23: 0.1062 REMARK 3 S31: -0.1013 S32: 0.4315 S33: 0.2358 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 134 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7703 25.2242 -2.3979 REMARK 3 T TENSOR REMARK 3 T11: 1.2142 T22: 0.8609 REMARK 3 T33: 1.0397 T12: 0.0029 REMARK 3 T13: -0.2896 T23: -0.0637 REMARK 3 L TENSOR REMARK 3 L11: 4.2036 L22: 1.4405 REMARK 3 L33: 5.0819 L12: -2.2411 REMARK 3 L13: -1.0116 L23: -0.5261 REMARK 3 S TENSOR REMARK 3 S11: 0.2369 S12: -1.2287 S13: 0.9461 REMARK 3 S21: 0.1326 S22: 0.0466 S23: 0.7106 REMARK 3 S31: 1.7157 S32: 0.3747 S33: -0.3622 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 144 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1681 29.3499 6.2758 REMARK 3 T TENSOR REMARK 3 T11: 0.5480 T22: 0.4447 REMARK 3 T33: 0.3924 T12: 0.0876 REMARK 3 T13: 0.0214 T23: -0.0448 REMARK 3 L TENSOR REMARK 3 L11: 6.2967 L22: 5.0572 REMARK 3 L33: 6.2484 L12: -5.3199 REMARK 3 L13: 5.6080 L23: -3.9167 REMARK 3 S TENSOR REMARK 3 S11: 0.3807 S12: 0.5641 S13: -0.3228 REMARK 3 S21: -1.2363 S22: -0.1937 S23: -0.3824 REMARK 3 S31: 0.1945 S32: 0.4359 S33: -0.3368 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 154 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4838 19.8218 27.3813 REMARK 3 T TENSOR REMARK 3 T11: 0.3748 T22: 0.5111 REMARK 3 T33: 0.4119 T12: 0.0547 REMARK 3 T13: 0.0766 T23: 0.0683 REMARK 3 L TENSOR REMARK 3 L11: 8.7703 L22: 3.5452 REMARK 3 L33: 3.1579 L12: -2.9166 REMARK 3 L13: 5.2350 L23: -1.6936 REMARK 3 S TENSOR REMARK 3 S11: -0.4652 S12: -0.7808 S13: -0.5937 REMARK 3 S21: 0.6138 S22: 0.5976 S23: 0.5844 REMARK 3 S31: -0.4546 S32: -0.5766 S33: -0.2528 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 164 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1691 23.0692 23.4409 REMARK 3 T TENSOR REMARK 3 T11: 0.2819 T22: 0.3532 REMARK 3 T33: 0.2499 T12: 0.0366 REMARK 3 T13: -0.0313 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 1.7197 L22: 2.2813 REMARK 3 L33: 1.4852 L12: 0.1748 REMARK 3 L13: -0.2599 L23: 0.9114 REMARK 3 S TENSOR REMARK 3 S11: 0.0175 S12: -0.2234 S13: 0.0394 REMARK 3 S21: 0.1707 S22: -0.0046 S23: 0.0679 REMARK 3 S31: -0.1125 S32: -0.0528 S33: -0.0156 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 198 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3142 22.7368 8.8841 REMARK 3 T TENSOR REMARK 3 T11: 0.3138 T22: 0.3866 REMARK 3 T33: 0.3138 T12: 0.0319 REMARK 3 T13: -0.0154 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.4357 L22: 4.9731 REMARK 3 L33: 2.4879 L12: 0.1544 REMARK 3 L13: -0.0683 L23: 1.2462 REMARK 3 S TENSOR REMARK 3 S11: 0.0219 S12: 0.2221 S13: -0.1165 REMARK 3 S21: -0.1667 S22: 0.0092 S23: 0.0598 REMARK 3 S31: 0.1354 S32: -0.1338 S33: -0.0240 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 233 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7233 10.9294 9.5560 REMARK 3 T TENSOR REMARK 3 T11: 0.3428 T22: 0.3851 REMARK 3 T33: 0.3613 T12: -0.0078 REMARK 3 T13: -0.0214 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.2977 L22: 1.9223 REMARK 3 L33: 1.7648 L12: -0.3395 REMARK 3 L13: 0.3415 L23: 0.7293 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: 0.0872 S13: -0.2479 REMARK 3 S21: -0.2161 S22: 0.0304 S23: 0.2367 REMARK 3 S31: 0.1522 S32: -0.2673 S33: -0.1299 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 255 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5594 31.1980 19.0439 REMARK 3 T TENSOR REMARK 3 T11: 0.2473 T22: 0.2704 REMARK 3 T33: 0.1981 T12: 0.0456 REMARK 3 T13: 0.0007 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 6.4625 L22: 3.8317 REMARK 3 L33: 4.8959 L12: 4.1741 REMARK 3 L13: 4.0776 L23: 4.0983 REMARK 3 S TENSOR REMARK 3 S11: 0.0275 S12: -0.0285 S13: 0.0674 REMARK 3 S21: 0.0208 S22: 0.0723 S23: 0.0365 REMARK 3 S31: -0.1048 S32: -0.0194 S33: -0.0769 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 265 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4055 12.3058 18.7123 REMARK 3 T TENSOR REMARK 3 T11: 0.3311 T22: 0.4766 REMARK 3 T33: 0.4702 T12: -0.0199 REMARK 3 T13: 0.0050 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 7.3820 L22: 1.7166 REMARK 3 L33: 3.3578 L12: 1.1273 REMARK 3 L13: 4.7163 L23: 0.0414 REMARK 3 S TENSOR REMARK 3 S11: 0.1243 S12: -0.8651 S13: -0.1586 REMARK 3 S21: 0.1300 S22: -0.0489 S23: 0.0376 REMARK 3 S31: 0.1035 S32: -1.0764 S33: -0.1234 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 278 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5789 23.8061 22.6194 REMARK 3 T TENSOR REMARK 3 T11: 0.2811 T22: 0.3017 REMARK 3 T33: 0.2996 T12: 0.0563 REMARK 3 T13: -0.0439 T23: -0.0516 REMARK 3 L TENSOR REMARK 3 L11: 3.0901 L22: 2.2404 REMARK 3 L33: 6.8341 L12: 0.2335 REMARK 3 L13: -1.3920 L23: -0.5827 REMARK 3 S TENSOR REMARK 3 S11: 0.3465 S12: -0.3674 S13: 0.1060 REMARK 3 S21: 0.3716 S22: -0.1851 S23: -0.4302 REMARK 3 S31: -0.1022 S32: 0.6858 S33: -0.2093 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SLR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-23. REMARK 100 THE DEPOSITION ID IS D_1000274019. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22033 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1DU3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 81.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 4.4MG/ML TRAIL+ 1MM REMARK 280 12MERNS2S6S IN 25MM HEPES PH 7.1, 150MM NACL RESERVOIR: 0.085M REMARK 280 HEPES PH 7.5, 8.5% PEG 8000, 8.5%EG, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 73.67500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.67500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 73.67500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.67500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 73.67500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 73.67500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 73.67500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 73.67500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 73.67500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 73.67500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 73.67500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 73.67500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 73.67500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 73.67500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 73.67500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 73.67500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 73.67500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 73.67500 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 110.51250 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 36.83750 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 36.83750 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 110.51250 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 110.51250 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 110.51250 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 36.83750 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 36.83750 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 110.51250 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 36.83750 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 110.51250 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 36.83750 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 110.51250 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 36.83750 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 36.83750 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 36.83750 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 110.51250 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 36.83750 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 110.51250 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 110.51250 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 110.51250 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 36.83750 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 36.83750 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 110.51250 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 110.51250 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 36.83750 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 36.83750 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 36.83750 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 36.83750 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 110.51250 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 36.83750 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 110.51250 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 36.83750 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 110.51250 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 110.51250 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 110.51250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -186.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN D 301 LIES ON A SPECIAL POSITION. REMARK 375 CL CL D 302 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 467 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 482 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 503 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 117 REMARK 465 PRO D 118 REMARK 465 ARG D 119 REMARK 465 GLY D 120 REMARK 465 GLY D 121 REMARK 465 ARG D 122 REMARK 465 PRO D 123 REMARK 465 ALA D 198A REMARK 465 GLU D 198B REMARK 465 ASP D 198C REMARK 465 ALA D 198D REMARK 465 SER D 198E REMARK 465 LYS D 198F REMARK 465 MET D 198G REMARK 465 VAL D 198H REMARK 465 SER D 198I REMARK 465 LYS D 198J REMARK 465 ASP D 198K REMARK 465 LYS D 198L REMARK 465 VAL D 198M REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG D 136 CG CD NE CZ NH1 NH2 REMARK 470 ASN D 138 CG OD1 ND2 REMARK 470 LYS D 146 CG CD CE NZ REMARK 470 LYS D 163 CD CE NZ REMARK 470 ARG D 206 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 237 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER D 161 45.12 -151.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 234 SG REMARK 620 2 CYS D 234 SG 0.0 REMARK 620 N 1 DBREF 8SLR D 118 285 UNP P50592 TNF10_MOUSE 118 291 SEQADV 8SLR MET D 117 UNP P50592 INITIATING METHIONINE SEQRES 1 D 175 MET PRO ARG GLY GLY ARG PRO GLN LYS VAL ALA ALA HIS SEQRES 2 D 175 ILE THR GLY ILE THR ARG ARG SER ASN SER ALA LEU ILE SEQRES 3 D 175 PRO ILE SER LYS ASP GLY LYS THR LEU GLY GLN LYS ILE SEQRES 4 D 175 GLU SER TRP GLU SER SER ARG LYS GLY HIS SER PHE LEU SEQRES 5 D 175 ASN HIS VAL LEU PHE ARG ASN GLY GLU LEU VAL ILE GLU SEQRES 6 D 175 GLN GLU GLY LEU TYR TYR ILE TYR SER GLN THR TYR PHE SEQRES 7 D 175 ARG PHE GLN GLU ALA GLU ASP ALA SER LYS MET VAL SER SEQRES 8 D 175 LYS ASP LYS VAL ARG THR LYS GLN LEU VAL GLN TYR ILE SEQRES 9 D 175 TYR LYS TYR THR SER TYR PRO ASP PRO ILE VAL LEU MET SEQRES 10 D 175 LYS SER ALA ARG ASN SER CYS TRP SER ARG ASP ALA GLU SEQRES 11 D 175 TYR GLY LEU TYR SER ILE TYR GLN GLY GLY LEU PHE GLU SEQRES 12 D 175 LEU LYS LYS ASN ASP ARG ILE PHE VAL SER VAL THR ASN SEQRES 13 D 175 GLU HIS LEU MET ASP LEU ASP GLN GLU ALA SER PHE PHE SEQRES 14 D 175 GLY ALA PHE LEU ILE ASN HET ZN D 301 1 HET CL D 302 1 HET CL D 303 1 HET CL D 304 1 HET PEG D 305 17 HET EDO D 306 10 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN ZN 2+ FORMUL 3 CL 3(CL 1-) FORMUL 6 PEG C4 H10 O3 FORMUL 7 EDO C2 H6 O2 FORMUL 8 HOH *103(H2 O) HELIX 1 AA1 ASN D 266 HIS D 268 5 3 SHEET 1 AA1 4 GLN D 153 LYS D 154 0 SHEET 2 AA1 4 ARG D 259 VAL D 264 -1 O VAL D 264 N GLN D 153 SHEET 3 AA1 4 GLU D 177 ILE D 180 -1 N LEU D 178 O ILE D 260 SHEET 4 AA1 4 VAL D 171 ARG D 174 -1 N LEU D 172 O VAL D 179 SHEET 1 AA2 4 GLN D 153 LYS D 154 0 SHEET 2 AA2 4 ARG D 259 VAL D 264 -1 O VAL D 264 N GLN D 153 SHEET 3 AA2 4 GLN D 209 TYR D 217 -1 N TYR D 213 O SER D 263 SHEET 4 AA2 4 ILE D 224 ASN D 232 -1 O ARG D 231 N LEU D 210 SHEET 1 AA3 3 TYR D 241 LEU D 254 0 SHEET 2 AA3 3 GLY D 184 GLN D 197 -1 N ILE D 188 O GLY D 250 SHEET 3 AA3 3 MET D 270 ASP D 271 -1 O ASP D 271 N TYR D 193 SHEET 1 AA4 3 TYR D 241 LEU D 254 0 SHEET 2 AA4 3 GLY D 184 GLN D 197 -1 N ILE D 188 O GLY D 250 SHEET 3 AA4 3 PHE D 278 ILE D 284 -1 O ILE D 284 N LEU D 185 LINK SG CYS D 234 ZN ZN D 301 1555 1555 2.28 LINK SG CYS D 234 ZN ZN D 301 1555 5555 2.28 CRYST1 147.350 147.350 147.350 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006787 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006787 0.00000