HEADER DNA BINDING PROTEIN/HYDROLASE 25-APR-23 8SM3 TITLE STRUCTURE OF BACILLUS CEREUS VD045 GABIJA GAJA-GAJB COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDONUCLEASE GAJA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GABIJA PROTEIN GAJA,NICKING ENDONUCLEASE GAJA; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GABIJA PROTEIN GAJB; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: PUTATIVE HELICASE GAJB; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS VD045; SOURCE 3 ORGANISM_TAXID: 1053225; SOURCE 4 GENE: GAJA, IIE_04982; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: BACILLUS CEREUS VD045; SOURCE 9 ORGANISM_TAXID: 1053225; SOURCE 10 GENE: GAJB, IIE_04983; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTI-PHAGE, NUCLEASE, HELICASE, DNA BINDING PROTEIN, DNA BINDING KEYWDS 2 PROTEIN-HYDROLASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.P.ANTINE,S.E.MOONEY,A.G.JOHNSON,P.J.KRANZUSCH REVDAT 3 24-JAN-24 8SM3 1 JRNL REVDAT 2 06-DEC-23 8SM3 1 JRNL REVDAT 1 22-NOV-23 8SM3 0 JRNL AUTH S.P.ANTINE,A.G.JOHNSON,S.E.MOONEY,A.LEAVITT,M.L.MAYER, JRNL AUTH 2 E.YIRMIYA,G.AMITAI,R.SOREK,P.J.KRANZUSCH JRNL TITL STRUCTURAL BASIS OF GABIJA ANTI-PHAGE DEFENCE AND VIRAL JRNL TITL 2 IMMUNE EVASION. JRNL REF NATURE V. 625 360 2024 JRNL REFN ESSN 1476-4687 JRNL PMID 37992757 JRNL DOI 10.1038/S41586-023-06855-2 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 47959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2400 - 7.2300 1.00 3549 152 0.2091 0.2513 REMARK 3 2 7.2200 - 5.7400 1.00 3371 147 0.2757 0.2418 REMARK 3 3 5.7400 - 5.0100 1.00 3330 145 0.2191 0.2355 REMARK 3 4 5.0100 - 4.5600 1.00 3298 143 0.1959 0.2591 REMARK 3 5 4.5500 - 4.2300 1.00 3291 143 0.1927 0.1907 REMARK 3 6 4.2300 - 3.9800 1.00 3271 142 0.2133 0.2503 REMARK 3 7 3.9800 - 3.7800 1.00 3253 141 0.2445 0.3055 REMARK 3 8 3.7800 - 3.6200 1.00 3257 143 0.2577 0.2791 REMARK 3 9 3.6200 - 3.4800 1.00 3256 140 0.2549 0.2881 REMARK 3 10 3.4800 - 3.3600 1.00 3228 140 0.2747 0.3256 REMARK 3 11 3.3600 - 3.2500 1.00 3232 141 0.3080 0.3524 REMARK 3 12 3.2500 - 3.1600 1.00 3237 139 0.3482 0.4224 REMARK 3 13 3.1600 - 3.0800 1.00 3200 139 0.3520 0.3689 REMARK 3 14 3.0800 - 3.0000 0.98 3192 139 0.3693 0.3973 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.452 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.379 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 91.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 130.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 8646 REMARK 3 ANGLE : 0.442 11628 REMARK 3 CHIRALITY : 0.040 1301 REMARK 3 PLANARITY : 0.004 1483 REMARK 3 DIHEDRAL : 12.662 3295 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 80.1234 -83.7626 13.4446 REMARK 3 T TENSOR REMARK 3 T11: 0.5846 T22: 0.6522 REMARK 3 T33: 0.5698 T12: -0.2789 REMARK 3 T13: 0.0127 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 1.3696 L22: 1.0987 REMARK 3 L33: 2.1351 L12: 0.5239 REMARK 3 L13: 1.0770 L23: 1.2651 REMARK 3 S TENSOR REMARK 3 S11: 0.1887 S12: -0.1381 S13: -0.0138 REMARK 3 S21: 0.1305 S22: -0.1162 S23: -0.0357 REMARK 3 S31: 0.3728 S32: 0.0223 S33: -0.0102 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.6458 -72.2203 24.1789 REMARK 3 T TENSOR REMARK 3 T11: 0.5459 T22: 0.7844 REMARK 3 T33: 0.6022 T12: -0.2821 REMARK 3 T13: 0.0645 T23: -0.0912 REMARK 3 L TENSOR REMARK 3 L11: 0.1507 L22: 0.3149 REMARK 3 L33: 0.2813 L12: -0.9835 REMARK 3 L13: -0.3163 L23: -0.2175 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: -0.1347 S13: -0.1923 REMARK 3 S21: -0.0321 S22: 0.0631 S23: 0.0612 REMARK 3 S31: -0.0573 S32: 0.1356 S33: -0.0007 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 296 THROUGH 575 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.3640 -96.8505 -22.9151 REMARK 3 T TENSOR REMARK 3 T11: 0.5888 T22: 0.7663 REMARK 3 T33: 0.5164 T12: -0.2931 REMARK 3 T13: 0.0427 T23: -0.0336 REMARK 3 L TENSOR REMARK 3 L11: 1.2511 L22: 0.9483 REMARK 3 L33: 2.2649 L12: 0.0649 REMARK 3 L13: 0.0362 L23: 0.3537 REMARK 3 S TENSOR REMARK 3 S11: -0.1492 S12: 0.3362 S13: -0.0357 REMARK 3 S21: -0.2008 S22: 0.1238 S23: -0.0488 REMARK 3 S31: 0.0779 S32: 0.0081 S33: 0.0055 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 87.4937 -47.6880 18.2884 REMARK 3 T TENSOR REMARK 3 T11: 0.8648 T22: 0.6360 REMARK 3 T33: 0.9668 T12: -0.2808 REMARK 3 T13: -0.1116 T23: -0.1278 REMARK 3 L TENSOR REMARK 3 L11: 0.7843 L22: 2.8418 REMARK 3 L33: 1.4959 L12: -0.4203 REMARK 3 L13: -0.3454 L23: 0.9303 REMARK 3 S TENSOR REMARK 3 S11: -0.1832 S12: 0.0707 S13: 0.5423 REMARK 3 S21: 0.1115 S22: 0.1665 S23: -0.1332 REMARK 3 S31: -0.2562 S32: 0.1173 S33: -0.0006 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 230 THROUGH 405 ) REMARK 3 ORIGIN FOR THE GROUP (A): 80.3733 -30.3956 42.8651 REMARK 3 T TENSOR REMARK 3 T11: 1.2063 T22: 1.1356 REMARK 3 T33: 1.1385 T12: -0.0332 REMARK 3 T13: 0.1379 T23: -0.2669 REMARK 3 L TENSOR REMARK 3 L11: 0.9823 L22: 1.4241 REMARK 3 L33: 0.8170 L12: 0.4897 REMARK 3 L13: 0.6454 L23: 0.8137 REMARK 3 S TENSOR REMARK 3 S11: 0.0447 S12: -0.3153 S13: 0.4189 REMARK 3 S21: 0.7424 S22: -0.0783 S23: 0.3970 REMARK 3 S31: 0.1863 S32: 0.0686 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 406 THROUGH 494 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.3678 -18.9620 38.1134 REMARK 3 T TENSOR REMARK 3 T11: 1.4857 T22: 1.1455 REMARK 3 T33: 1.7969 T12: -0.1954 REMARK 3 T13: 0.2674 T23: -0.4372 REMARK 3 L TENSOR REMARK 3 L11: 0.5292 L22: 0.4868 REMARK 3 L33: 0.6646 L12: -0.5209 REMARK 3 L13: 0.0943 L23: 0.6252 REMARK 3 S TENSOR REMARK 3 S11: -0.0336 S12: -0.3361 S13: 0.1986 REMARK 3 S21: 0.3692 S22: -0.1196 S23: 0.1440 REMARK 3 S31: -0.2993 S32: 0.1976 S33: -0.0014 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SM3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-23. REMARK 100 THE DEPOSITION ID IS D_1000274047. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48144 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 49.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.10 REMARK 200 R MERGE (I) : 0.16300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 3.06900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES-NAOH PH 7.5, 2.4% PEG REMARK 280 -400, AND 2.2 M AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 115.87133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.93567 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 115.87133 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.93567 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 115.87133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 57.93567 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 115.87133 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 57.93567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 107.89550 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -186.88049 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 57.93567 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 107.89550 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 -186.88049 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 57.93567 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 SER A -6 REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 GLY A -1 REMARK 465 PHE A 172 REMARK 465 GLU A 173 REMARK 465 GLU A 174 REMARK 465 SER A 175 REMARK 465 GLN A 176 REMARK 465 GLY A 177 REMARK 465 ASN A 178 REMARK 465 GLU A 179 REMARK 465 SER A 180 REMARK 465 MET A 202 REMARK 465 THR A 203 REMARK 465 ILE A 204 REMARK 465 ILE A 205 REMARK 465 GLU A 222 REMARK 465 GLU A 223 REMARK 465 VAL A 224 REMARK 465 LYS A 247 REMARK 465 ASP A 248 REMARK 465 GLY A 249 REMARK 465 ASP A 250 REMARK 465 SER A 251 REMARK 465 ASN A 252 REMARK 465 TYR A 253 REMARK 465 TYR A 254 REMARK 465 PRO A 255 REMARK 465 THR A 256 REMARK 465 SER A 257 REMARK 465 GLY A 258 REMARK 465 ASP A 576 REMARK 465 ARG A 577 REMARK 465 GLY A 578 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 84 OH TYR B 42 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 4 -78.86 -82.98 REMARK 500 ARG A 12 -128.66 60.04 REMARK 500 ASN A 79 34.89 -89.81 REMARK 500 LYS A 94 -111.08 61.42 REMARK 500 LEU A 118 22.98 46.64 REMARK 500 ASN A 132 52.96 -116.70 REMARK 500 ILE A 226 79.27 -119.15 REMARK 500 LEU A 228 84.01 59.44 REMARK 500 LYS A 229 -113.99 -80.92 REMARK 500 MET A 232 -48.15 71.23 REMARK 500 ASP A 329 143.63 -171.04 REMARK 500 GLU A 395 85.57 -151.11 REMARK 500 TYR A 493 51.02 -94.64 REMARK 500 ILE A 510 -70.74 -114.64 REMARK 500 GLU A 529 -10.65 60.55 REMARK 500 SER B 21 -23.61 67.99 REMARK 500 ILE B 81 -60.32 -121.43 REMARK 500 ASN B 105 61.19 62.60 REMARK 500 SER B 195 -155.79 59.00 REMARK 500 ASN B 225 53.98 -105.69 REMARK 500 ASP B 318 70.68 -69.74 REMARK 500 ALA B 320 87.42 -66.60 REMARK 500 ASN B 373 175.32 72.52 REMARK 500 ALA B 428 57.41 -116.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-41983 RELATED DB: EMDB REMARK 900 EMD-41983 CONTAINS THE SAME PROTEIN COMPLEXED WITH VIRAL INHIBITOR REMARK 900 GAD1 DBREF 8SM3 A 2 578 UNP J8H9C1 GAJA_BACC6 2 578 DBREF 8SM3 B 2 494 UNP J8HQ06 GAJB_BACC6 2 494 SEQADV 8SM3 GLY A -9 UNP J8H9C1 EXPRESSION TAG SEQADV 8SM3 SER A -8 UNP J8H9C1 EXPRESSION TAG SEQADV 8SM3 GLY A -7 UNP J8H9C1 EXPRESSION TAG SEQADV 8SM3 SER A -6 UNP J8H9C1 EXPRESSION TAG SEQADV 8SM3 GLY A -5 UNP J8H9C1 EXPRESSION TAG SEQADV 8SM3 SER A -4 UNP J8H9C1 EXPRESSION TAG SEQADV 8SM3 GLY A -3 UNP J8H9C1 EXPRESSION TAG SEQADV 8SM3 SER A -2 UNP J8H9C1 EXPRESSION TAG SEQADV 8SM3 GLY A -1 UNP J8H9C1 EXPRESSION TAG SEQADV 8SM3 SER A 0 UNP J8H9C1 EXPRESSION TAG SEQADV 8SM3 SER A 1 UNP J8H9C1 EXPRESSION TAG SEQRES 1 A 588 GLY SER GLY SER GLY SER GLY SER GLY SER SER LYS PHE SEQRES 2 A 588 SER ASN ILE THR ILE LYS ASN PHE ARG ASN PHE GLU LYS SEQRES 3 A 588 VAL ASN ILE ASN LEU ASP ASN LYS ASN VAL ILE PHE GLY SEQRES 4 A 588 MET ASN ASP ILE GLY LYS THR ASN PHE LEU TYR ALA LEU SEQRES 5 A 588 ARG PHE LEU LEU ASP LYS GLU ILE ARG LYS PHE GLY PHE SEQRES 6 A 588 ASN LYS SER ASP TYR HIS LYS HIS ASP THR SER LYS LYS SEQRES 7 A 588 ILE GLU ILE ILE LEU THR LEU ASP LEU SER ASN TYR GLU SEQRES 8 A 588 LYS ASP GLU ASP THR LYS LYS LEU ILE SER VAL VAL LYS SEQRES 9 A 588 GLY ALA ARG THR SER ALA ASN ALA ASP VAL PHE TYR ILE SEQRES 10 A 588 ALA LEU GLU SER LYS TYR ASP ASP LYS GLU LEU TYR GLY SEQRES 11 A 588 ASN ILE ILE LEU LYS TRP GLY SER GLU LEU ASP ASN LEU SEQRES 12 A 588 ILE ASP ILE PRO GLY ARG GLY ASN ILE ASN ALA LEU ASP SEQRES 13 A 588 ASN VAL PHE LYS VAL ILE TYR ILE ASN PRO LEU VAL ASP SEQRES 14 A 588 LEU ASP LYS LEU PHE ALA GLN ASN LYS LYS TYR ILE PHE SEQRES 15 A 588 GLU GLU SER GLN GLY ASN GLU SER ASP GLU GLY ILE LEU SEQRES 16 A 588 ASN ASN ILE LYS SER LEU THR ASP GLN VAL ASN GLN GLN SEQRES 17 A 588 ILE GLY GLU MET THR ILE ILE LYS GLY PHE GLN GLN GLU SEQRES 18 A 588 ILE THR SER GLU TYR ARG SER LEU LYS LYS GLU GLU VAL SEQRES 19 A 588 SER ILE GLU LEU LYS SER GLU MET ALA ILE LYS GLY PHE SEQRES 20 A 588 PHE SER ASP ILE ILE PRO TYR ILE LYS LYS ASP GLY ASP SEQRES 21 A 588 SER ASN TYR TYR PRO THR SER GLY ASP GLY ARG ARG LYS SEQRES 22 A 588 MET LEU SER TYR SER ILE TYR ASN TYR LEU ALA LYS LYS SEQRES 23 A 588 LYS TYR GLU ASP LYS ILE VAL ILE TYR LEU ILE GLU GLU SEQRES 24 A 588 PRO GLU ILE SER LEU HIS ARG SER MET GLN ILE ALA LEU SEQRES 25 A 588 SER LYS GLN LEU PHE GLU GLN SER THR TYR LYS TYR PHE SEQRES 26 A 588 PHE LEU SER THR HIS SER PRO GLU LEU LEU TYR GLU MET SEQRES 27 A 588 ASP ASN THR ARG LEU ILE ARG VAL HIS SER THR GLU LYS SEQRES 28 A 588 VAL VAL CYS SER SER HIS MET TYR ASN VAL GLU GLU ALA SEQRES 29 A 588 TYR GLY SER VAL LYS LYS LYS LEU ASN LYS ALA LEU SER SEQRES 30 A 588 SER ALA LEU PHE ALA GLU ARG VAL LEU LEU ILE GLU GLY SEQRES 31 A 588 PRO SER GLU LYS ILE LEU PHE GLU LYS VAL LEU ASP GLU SEQRES 32 A 588 VAL GLU PRO GLU TYR GLU LEU ASN GLY GLY PHE LEU LEU SEQRES 33 A 588 GLU VAL GLY GLY THR TYR PHE ASN HIS TYR VAL CYS THR SEQRES 34 A 588 LEU ASN ASP LEU GLY ILE THR HIS ILE ILE LYS THR ASP SEQRES 35 A 588 ASN ASP LEU LYS SER LYS LYS GLY LYS LYS GLY VAL TYR SEQRES 36 A 588 GLU LEU LEU GLY LEU ASN ARG CYS LEU ASN LEU LEU GLY SEQRES 37 A 588 ARG GLU ASN LEU ASP GLU ILE THR ILE ASP ILE PRO GLU SEQRES 38 A 588 ASP ILE LYS GLY LYS LYS LYS LYS GLU ARG LEU ASN GLU SEQRES 39 A 588 ARG LYS LYS GLU ILE PHE LYS GLN TYR LYS ASN GLU VAL SEQRES 40 A 588 GLY GLU PHE LEU GLY GLU ARG ILE TYR LEU SER GLU ILE SEQRES 41 A 588 ASP LEU GLU ASN ASP LEU TYR SER ALA ILE GLY GLU SER SEQRES 42 A 588 MET LYS ARG ILE PHE GLU ASN GLU ASP PRO VAL HIS TYR SEQRES 43 A 588 LEU GLN LYS SER LYS LEU PHE ASN MET VAL GLU LEU VAL SEQRES 44 A 588 ASN ASN LEU SER THR LYS ASP CYS PHE ASP VAL PHE GLU SEQRES 45 A 588 HIS GLU LYS PHE ALA CYS LEU LYS GLU LEU VAL GLY SER SEQRES 46 A 588 ASP ARG GLY SEQRES 1 B 493 SER ARG GLU GLN ILE ILE LYS ASP GLY GLY ASN ILE LEU SEQRES 2 B 493 VAL THR ALA GLY ALA GLY SER GLY LYS THR THR ILE LEU SEQRES 3 B 493 VAL SER LYS ILE GLU ALA ASP LEU LYS GLU ASN LYS THR SEQRES 4 B 493 HIS TYR SER ILE ALA ALA VAL THR PHE THR ASN LYS ALA SEQRES 5 B 493 ALA LYS GLU ILE GLU GLY ARG LEU GLY TYR SER SER ARG SEQRES 6 B 493 GLY ASN PHE ILE GLY THR ASN ASP GLY PHE VAL GLU SER SEQRES 7 B 493 GLU ILE ILE ARG PRO PHE ILE LYS ASP ALA PHE GLY ASN SEQRES 8 B 493 ASP TYR PRO ASP ASN PHE THR ALA GLU TYR PHE ASP ASN SEQRES 9 B 493 GLN PHE ALA SER TYR ASP LYS GLY LEU GLN VAL LEU LYS SEQRES 10 B 493 TYR GLN ASN ILE LEU GLY THR TYR SER ASN PRO LYS LYS SEQRES 11 B 493 ASN PHE LYS PHE GLN LEU ALA LEU ASP ILE LEU LYS LYS SEQRES 12 B 493 SER LEU VAL ALA ARG GLN TYR ILE PHE SER LYS TYR PHE SEQRES 13 B 493 LYS ILE PHE ILE ASP GLU TYR GLN ASP SER ASP LYS ASP SEQRES 14 B 493 MET HIS ASN LEU PHE MET TYR LEU LYS ASP GLN LEU LYS SEQRES 15 B 493 ILE LYS LEU PHE ILE VAL GLY ASP PRO LYS GLN SER ILE SEQRES 16 B 493 TYR ILE TRP ARG GLY ALA GLU PRO GLU ASN PHE ASN GLY SEQRES 17 B 493 LEU ILE GLU ASN SER THR ASP PHE ASN LYS TYR HIS LEU SEQRES 18 B 493 THR SER ASN PHE ARG CYS CYS GLN ASP ILE GLN ASN TYR SEQRES 19 B 493 SER ASN LEU PHE ASN GLU GLU THR ARG SER LEU ILE LYS SEQRES 20 B 493 GLU LYS ASN GLU VAL GLN ASN VAL ILE SER ILE ALA ASP SEQRES 21 B 493 ASP MET PRO ILE SER ASP ILE LEU LEU LYS LEU THR GLU SEQRES 22 B 493 GLU LYS GLN VAL LEU ASN ILE GLU ALA GLU LEU VAL ILE SEQRES 23 B 493 LEU VAL ARG ARG ARG ASN GLN ALA ILE GLU ILE MET LYS SEQRES 24 B 493 GLU LEU ASN GLU GLU GLY PHE ASN PHE ILE PHE ILE PRO SEQRES 25 B 493 GLN THR PRO LEU ASP ARG ALA THR PRO ASN ALA THR LEU SEQRES 26 B 493 LEU LYS GLU VAL ILE LYS TYR VAL LYS ASN ASP ARG TYR SEQRES 27 B 493 SER ILE TYR ASP LEU ALA ALA GLU ILE VAL GLY ASN LEU SEQRES 28 B 493 SER SER ARG GLU ILE LYS GLU ILE GLN LYS ILE ILE ASN SEQRES 29 B 493 GLU LEU LEU VAL PRO ASN ILE ASN GLN VAL LEU ILE ASN SEQRES 30 B 493 GLN VAL LEU ILE ASN LEU PHE ALA LYS LEU GLU ILE THR SEQRES 31 B 493 LEU ASP THR ARG GLU ILE THR ALA PHE THR GLU VAL MET SEQRES 32 B 493 MET THR ASN GLU PHE ASP ILE ALA PHE ASP THR ASN GLU SEQRES 33 B 493 TYR LEU HIS LYS ILE PHE THR VAL HIS SER ALA LYS GLY SEQRES 34 B 493 LEU GLU PHE ASN GLN VAL ILE ILE THR ALA SER ASP TYR SEQRES 35 B 493 ASN VAL HIS TYR ASN ARG ASP THR ASN GLU HIS TYR VAL SEQRES 36 B 493 ALA THR THR ARG ALA LYS ASP LYS LEU ILE VAL ILE MET SEQRES 37 B 493 ASP ASN LYS LYS TYR SER ASP TYR ILE GLU THR LEU MET SEQRES 38 B 493 LYS GLU LEU LYS ILE LYS ASN ILE ILE LYS SER ILE HET SO4 A 601 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- HELIX 1 AA1 ASN A 31 ASP A 47 1 17 HELIX 2 AA2 ASP A 47 LYS A 52 1 6 HELIX 3 AA3 TYR A 60 ASP A 64 5 5 HELIX 4 AA4 SER A 78 LYS A 82 5 5 HELIX 5 AA5 ASP A 83 LYS A 94 1 12 HELIX 6 AA6 GLY A 95 ARG A 97 5 3 HELIX 7 AA7 ALA A 144 VAL A 148 1 5 HELIX 8 AA8 ASP A 159 LYS A 168 1 10 HELIX 9 AA9 GLU A 182 GLU A 201 1 20 HELIX 10 AB1 GLY A 207 LYS A 220 1 14 HELIX 11 AB2 GLY A 260 TYR A 278 1 19 HELIX 12 AB3 HIS A 295 GLU A 308 1 14 HELIX 13 AB4 SER A 321 TYR A 326 5 6 HELIX 14 AB5 TYR A 355 SER A 357 5 3 HELIX 15 AB6 VAL A 358 SER A 368 1 11 HELIX 16 AB7 GLY A 380 GLU A 395 1 16 HELIX 17 AB8 PHE A 413 LEU A 423 1 11 HELIX 18 AB9 LEU A 447 LEU A 457 1 11 HELIX 19 AC1 GLY A 475 TYR A 493 1 19 HELIX 20 AC2 TYR A 493 GLU A 503 1 11 HELIX 21 AC3 ASP A 511 ILE A 520 1 10 HELIX 22 AC4 ILE A 520 GLU A 529 1 10 HELIX 23 AC5 ASP A 532 GLN A 538 1 7 HELIX 24 AC6 SER A 540 LEU A 552 1 13 HELIX 25 AC7 SER A 553 HIS A 563 1 11 HELIX 26 AC8 PHE A 566 GLY A 574 1 9 HELIX 27 AC9 ARG B 3 ASP B 9 1 7 HELIX 28 AD1 SER B 21 ASN B 38 1 18 HELIX 29 AD2 THR B 50 GLY B 62 1 13 HELIX 30 AD3 ASN B 73 ILE B 81 1 9 HELIX 31 AD4 ILE B 81 GLY B 91 1 11 HELIX 32 AD5 SER B 109 TYR B 119 1 11 HELIX 33 AD6 ASN B 132 SER B 145 1 14 HELIX 34 AD7 SER B 145 LYS B 155 1 11 HELIX 35 AD8 GLU B 163 SER B 167 5 5 HELIX 36 AD9 ASP B 168 GLN B 181 1 14 HELIX 37 AE1 GLU B 203 SER B 214 1 12 HELIX 38 AE2 CYS B 229 LEU B 238 1 10 HELIX 39 AE3 PRO B 264 GLU B 275 1 12 HELIX 40 AE4 ARG B 291 GLU B 305 1 15 HELIX 41 AE5 ASN B 323 ASN B 336 1 14 HELIX 42 AE6 SER B 340 ILE B 348 1 9 HELIX 43 AE7 SER B 353 ASN B 365 1 13 HELIX 44 AE8 GLU B 366 VAL B 369 5 4 HELIX 45 AE9 ILE B 372 LEU B 388 1 17 HELIX 46 AF1 ASP B 393 THR B 406 1 14 HELIX 47 AF2 ASP B 410 ASP B 414 5 5 HELIX 48 AF3 SER B 441 TYR B 443 5 3 HELIX 49 AF4 ASP B 450 ALA B 461 1 12 HELIX 50 AF5 ASN B 471 LEU B 485 1 15 SHEET 1 AA1 6 PHE A 14 ASN A 20 0 SHEET 2 AA1 6 PHE A 3 PHE A 11 -1 N ILE A 6 O ILE A 19 SHEET 3 AA1 6 ILE A 69 ASP A 76 -1 O ILE A 72 N THR A 7 SHEET 4 AA1 6 VAL A 104 SER A 111 -1 O ILE A 107 N LEU A 73 SHEET 5 AA1 6 ILE A 123 GLY A 127 -1 O LYS A 125 N ALA A 108 SHEET 6 AA1 6 ILE A 134 ASP A 135 -1 O ILE A 134 N TRP A 126 SHEET 1 AA2 6 PHE A 149 ILE A 154 0 SHEET 2 AA2 6 ILE A 282 GLU A 288 1 O LEU A 286 N ILE A 152 SHEET 3 AA2 6 PHE A 315 SER A 318 1 O PHE A 316 N TYR A 285 SHEET 4 AA2 6 LYS A 24 GLY A 29 1 N ILE A 27 O LEU A 317 SHEET 5 AA2 6 THR A 331 VAL A 336 1 O ILE A 334 N VAL A 26 SHEET 6 AA2 6 CYS A 344 TYR A 349 -1 O HIS A 347 N LEU A 333 SHEET 1 AA3 2 GLY A 138 ARG A 139 0 SHEET 2 AA3 2 ILE A 142 ASN A 143 -1 O ILE A 142 N ARG A 139 SHEET 1 AA4 4 GLY A 403 GLU A 407 0 SHEET 2 AA4 4 ARG A 374 ILE A 378 1 N ILE A 378 O LEU A 406 SHEET 3 AA4 4 THR A 426 THR A 431 1 O ILE A 428 N LEU A 377 SHEET 4 AA4 4 ILE A 505 LEU A 507 1 O TYR A 506 N ILE A 429 SHEET 1 AA5 3 LYS A 436 SER A 437 0 SHEET 2 AA5 3 VAL A 444 GLU A 446 -1 O GLU A 446 N LYS A 436 SHEET 3 AA5 3 ILE A 465 THR A 466 -1 O ILE A 465 N TYR A 445 SHEET 1 AA6 6 PHE B 69 THR B 72 0 SHEET 2 AA6 6 SER B 43 THR B 48 1 N ALA B 46 O PHE B 69 SHEET 3 AA6 6 TYR B 156 ILE B 161 1 O PHE B 160 N ALA B 45 SHEET 4 AA6 6 LYS B 185 GLY B 190 1 O PHE B 187 N ILE B 161 SHEET 5 AA6 6 ILE B 13 THR B 16 1 N ILE B 13 O ILE B 188 SHEET 6 AA6 6 ASN B 218 HIS B 221 1 O ASN B 218 N LEU B 14 SHEET 1 AA7 2 THR B 99 GLU B 101 0 SHEET 2 AA7 2 ILE B 122 GLY B 124 1 O LEU B 123 N THR B 99 SHEET 1 AA8 7 ILE B 310 ILE B 312 0 SHEET 2 AA8 7 LYS B 421 THR B 424 1 O ILE B 422 N ILE B 312 SHEET 3 AA8 7 LEU B 285 VAL B 289 1 N LEU B 285 O LYS B 421 SHEET 4 AA8 7 GLN B 435 THR B 439 1 O ILE B 437 N LEU B 288 SHEET 5 AA8 7 LEU B 465 ILE B 468 1 O ILE B 466 N VAL B 436 SHEET 6 AA8 7 VAL B 256 ILE B 259 1 N ILE B 257 O VAL B 467 SHEET 7 AA8 7 LYS B 492 SER B 493 1 O LYS B 492 N SER B 258 CRYST1 215.791 215.791 173.807 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004634 0.002676 0.000000 0.00000 SCALE2 0.000000 0.005351 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005754 0.00000