data_8SPA # _entry.id 8SPA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.403 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8SPA pdb_00008spa 10.2210/pdb8spa/pdb WWPDB D_1000274193 ? ? EMDB EMD-40677 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2024-05-08 ? 2 'EM metadata' 1 0 2024-05-08 ? 3 FSC 1 0 2024-05-08 ? 4 'Half map' 1 0 2024-05-08 1 5 'Half map' 1 0 2024-05-08 2 6 Image 1 0 2024-05-08 ? 7 'Primary map' 1 0 2024-05-08 ? 8 'Structure model' 1 1 2025-05-21 ? 9 'EM metadata' 1 1 2025-05-21 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 8 'Structure model' 'Data collection' 2 8 'Structure model' 'Structure summary' 3 9 'EM metadata' 'Data processing' 4 9 'EM metadata' 'Experimental summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 8 'Structure model' em_admin 2 8 'Structure model' em_software 3 8 'Structure model' pdbx_entry_details 4 9 'EM metadata' em_admin 5 9 'EM metadata' em_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 8 'Structure model' '_em_admin.last_update' 2 8 'Structure model' '_em_software.name' 3 9 'EM metadata' '_em_admin.last_update' 4 9 'EM metadata' '_em_software.name' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8SPA _pdbx_database_status.recvd_initial_deposition_date 2023-05-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Structural insights into cellular control of the human CPEB3 prion, functionally regulated by a labile-amyloid-forming segment' _pdbx_database_related.db_id EMD-40677 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email jarod07@gmail.com _pdbx_contact_author.name_first Jose _pdbx_contact_author.name_last Rodriguez _pdbx_contact_author.name_mi A _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0248-4964 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Flores, M.D.' 1 0000-0002-4483-087X 'Sawaya, M.R.' 2 0000-0003-0874-9043 'Boyer, D.R.' 3 0000-0002-4487-0230 'Zink, S.' 4 0000-0002-3220-8290 'Fioriti, L.' 5 0000-0003-2429-8967 'Rodriguez, J.A.' 6 0000-0002-0248-4964 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Structure of a reversible amyloid fibril formed by the CPEB3 prion-like domain reveals a core sequence involved in translational regulation ; _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Flores, M.D.' 1 ? primary 'Sawaya, M.R.' 2 ? primary 'Boyer, D.R.' 3 ? primary 'Zink, S.' 4 ? primary 'Fioriti, L.' 5 ? primary 'Rodriguez, J.A.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Cytoplasmic polyadenylation element-binding protein 3' _entity.formula_weight 5279.761 _entity.pdbx_number_of_molecules 5 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'PRD1 (UNP residues 103-151)' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CPE-BP3,CPE-binding protein 3,hCPEB-3' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code LSPSFGSTWSTGTTNAVEDSFFQGITPVNGTMLFQNFPHHVNPVFGGTF _entity_poly.pdbx_seq_one_letter_code_can LSPSFGSTWSTGTTNAVEDSFFQGITPVNGTMLFQNFPHHVNPVFGGTF _entity_poly.pdbx_strand_id A,B,C,D,E _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 SER n 1 3 PRO n 1 4 SER n 1 5 PHE n 1 6 GLY n 1 7 SER n 1 8 THR n 1 9 TRP n 1 10 SER n 1 11 THR n 1 12 GLY n 1 13 THR n 1 14 THR n 1 15 ASN n 1 16 ALA n 1 17 VAL n 1 18 GLU n 1 19 ASP n 1 20 SER n 1 21 PHE n 1 22 PHE n 1 23 GLN n 1 24 GLY n 1 25 ILE n 1 26 THR n 1 27 PRO n 1 28 VAL n 1 29 ASN n 1 30 GLY n 1 31 THR n 1 32 MET n 1 33 LEU n 1 34 PHE n 1 35 GLN n 1 36 ASN n 1 37 PHE n 1 38 PRO n 1 39 HIS n 1 40 HIS n 1 41 VAL n 1 42 ASN n 1 43 PRO n 1 44 VAL n 1 45 PHE n 1 46 GLY n 1 47 GLY n 1 48 THR n 1 49 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 49 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CPEB3, KIAA0940' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ;Escherichia coli 'BL21-Gold(DE3)pLysS AG' ; _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 866768 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 2 2 LEU LEU A . n A 1 2 SER 2 3 3 SER SER A . n A 1 3 PRO 3 4 4 PRO PRO A . n A 1 4 SER 4 5 5 SER SER A . n A 1 5 PHE 5 6 6 PHE PHE A . n A 1 6 GLY 6 7 7 GLY GLY A . n A 1 7 SER 7 8 8 SER SER A . n A 1 8 THR 8 9 9 THR THR A . n A 1 9 TRP 9 10 10 TRP TRP A . n A 1 10 SER 10 11 11 SER SER A . n A 1 11 THR 11 12 12 THR THR A . n A 1 12 GLY 12 13 13 GLY GLY A . n A 1 13 THR 13 14 14 THR THR A . n A 1 14 THR 14 15 15 THR THR A . n A 1 15 ASN 15 16 16 ASN ASN A . n A 1 16 ALA 16 17 17 ALA ALA A . n A 1 17 VAL 17 18 18 VAL VAL A . n A 1 18 GLU 18 19 19 GLU GLU A . n A 1 19 ASP 19 20 20 ASP ASP A . n A 1 20 SER 20 21 21 SER SER A . n A 1 21 PHE 21 22 22 PHE PHE A . n A 1 22 PHE 22 23 23 PHE PHE A . n A 1 23 GLN 23 24 24 GLN GLN A . n A 1 24 GLY 24 25 25 GLY GLY A . n A 1 25 ILE 25 26 26 ILE ILE A . n A 1 26 THR 26 27 27 THR THR A . n A 1 27 PRO 27 28 28 PRO PRO A . n A 1 28 VAL 28 29 29 VAL VAL A . n A 1 29 ASN 29 30 30 ASN ASN A . n A 1 30 GLY 30 31 31 GLY GLY A . n A 1 31 THR 31 32 32 THR THR A . n A 1 32 MET 32 33 33 MET MET A . n A 1 33 LEU 33 34 34 LEU LEU A . n A 1 34 PHE 34 35 35 PHE PHE A . n A 1 35 GLN 35 36 36 GLN GLN A . n A 1 36 ASN 36 37 37 ASN ASN A . n A 1 37 PHE 37 38 38 PHE PHE A . n A 1 38 PRO 38 39 39 PRO PRO A . n A 1 39 HIS 39 40 40 HIS HIS A . n A 1 40 HIS 40 41 41 HIS HIS A . n A 1 41 VAL 41 42 42 VAL VAL A . n A 1 42 ASN 42 43 43 ASN ASN A . n A 1 43 PRO 43 44 44 PRO PRO A . n A 1 44 VAL 44 45 45 VAL VAL A . n A 1 45 PHE 45 46 46 PHE PHE A . n A 1 46 GLY 46 47 47 GLY GLY A . n A 1 47 GLY 47 48 48 GLY GLY A . n A 1 48 THR 48 49 49 THR THR A . n A 1 49 PHE 49 50 50 PHE PHE A . n B 1 1 LEU 1 2 2 LEU LEU B . n B 1 2 SER 2 3 3 SER SER B . n B 1 3 PRO 3 4 4 PRO PRO B . n B 1 4 SER 4 5 5 SER SER B . n B 1 5 PHE 5 6 6 PHE PHE B . n B 1 6 GLY 6 7 7 GLY GLY B . n B 1 7 SER 7 8 8 SER SER B . n B 1 8 THR 8 9 9 THR THR B . n B 1 9 TRP 9 10 10 TRP TRP B . n B 1 10 SER 10 11 11 SER SER B . n B 1 11 THR 11 12 12 THR THR B . n B 1 12 GLY 12 13 13 GLY GLY B . n B 1 13 THR 13 14 14 THR THR B . n B 1 14 THR 14 15 15 THR THR B . n B 1 15 ASN 15 16 16 ASN ASN B . n B 1 16 ALA 16 17 17 ALA ALA B . n B 1 17 VAL 17 18 18 VAL VAL B . n B 1 18 GLU 18 19 19 GLU GLU B . n B 1 19 ASP 19 20 20 ASP ASP B . n B 1 20 SER 20 21 21 SER SER B . n B 1 21 PHE 21 22 22 PHE PHE B . n B 1 22 PHE 22 23 23 PHE PHE B . n B 1 23 GLN 23 24 24 GLN GLN B . n B 1 24 GLY 24 25 25 GLY GLY B . n B 1 25 ILE 25 26 26 ILE ILE B . n B 1 26 THR 26 27 27 THR THR B . n B 1 27 PRO 27 28 28 PRO PRO B . n B 1 28 VAL 28 29 29 VAL VAL B . n B 1 29 ASN 29 30 30 ASN ASN B . n B 1 30 GLY 30 31 31 GLY GLY B . n B 1 31 THR 31 32 32 THR THR B . n B 1 32 MET 32 33 33 MET MET B . n B 1 33 LEU 33 34 34 LEU LEU B . n B 1 34 PHE 34 35 35 PHE PHE B . n B 1 35 GLN 35 36 36 GLN GLN B . n B 1 36 ASN 36 37 37 ASN ASN B . n B 1 37 PHE 37 38 38 PHE PHE B . n B 1 38 PRO 38 39 39 PRO PRO B . n B 1 39 HIS 39 40 40 HIS HIS B . n B 1 40 HIS 40 41 41 HIS HIS B . n B 1 41 VAL 41 42 42 VAL VAL B . n B 1 42 ASN 42 43 43 ASN ASN B . n B 1 43 PRO 43 44 44 PRO PRO B . n B 1 44 VAL 44 45 45 VAL VAL B . n B 1 45 PHE 45 46 46 PHE PHE B . n B 1 46 GLY 46 47 47 GLY GLY B . n B 1 47 GLY 47 48 48 GLY GLY B . n B 1 48 THR 48 49 49 THR THR B . n B 1 49 PHE 49 50 50 PHE PHE B . n C 1 1 LEU 1 2 2 LEU LEU C . n C 1 2 SER 2 3 3 SER SER C . n C 1 3 PRO 3 4 4 PRO PRO C . n C 1 4 SER 4 5 5 SER SER C . n C 1 5 PHE 5 6 6 PHE PHE C . n C 1 6 GLY 6 7 7 GLY GLY C . n C 1 7 SER 7 8 8 SER SER C . n C 1 8 THR 8 9 9 THR THR C . n C 1 9 TRP 9 10 10 TRP TRP C . n C 1 10 SER 10 11 11 SER SER C . n C 1 11 THR 11 12 12 THR THR C . n C 1 12 GLY 12 13 13 GLY GLY C . n C 1 13 THR 13 14 14 THR THR C . n C 1 14 THR 14 15 15 THR THR C . n C 1 15 ASN 15 16 16 ASN ASN C . n C 1 16 ALA 16 17 17 ALA ALA C . n C 1 17 VAL 17 18 18 VAL VAL C . n C 1 18 GLU 18 19 19 GLU GLU C . n C 1 19 ASP 19 20 20 ASP ASP C . n C 1 20 SER 20 21 21 SER SER C . n C 1 21 PHE 21 22 22 PHE PHE C . n C 1 22 PHE 22 23 23 PHE PHE C . n C 1 23 GLN 23 24 24 GLN GLN C . n C 1 24 GLY 24 25 25 GLY GLY C . n C 1 25 ILE 25 26 26 ILE ILE C . n C 1 26 THR 26 27 27 THR THR C . n C 1 27 PRO 27 28 28 PRO PRO C . n C 1 28 VAL 28 29 29 VAL VAL C . n C 1 29 ASN 29 30 30 ASN ASN C . n C 1 30 GLY 30 31 31 GLY GLY C . n C 1 31 THR 31 32 32 THR THR C . n C 1 32 MET 32 33 33 MET MET C . n C 1 33 LEU 33 34 34 LEU LEU C . n C 1 34 PHE 34 35 35 PHE PHE C . n C 1 35 GLN 35 36 36 GLN GLN C . n C 1 36 ASN 36 37 37 ASN ASN C . n C 1 37 PHE 37 38 38 PHE PHE C . n C 1 38 PRO 38 39 39 PRO PRO C . n C 1 39 HIS 39 40 40 HIS HIS C . n C 1 40 HIS 40 41 41 HIS HIS C . n C 1 41 VAL 41 42 42 VAL VAL C . n C 1 42 ASN 42 43 43 ASN ASN C . n C 1 43 PRO 43 44 44 PRO PRO C . n C 1 44 VAL 44 45 45 VAL VAL C . n C 1 45 PHE 45 46 46 PHE PHE C . n C 1 46 GLY 46 47 47 GLY GLY C . n C 1 47 GLY 47 48 48 GLY GLY C . n C 1 48 THR 48 49 49 THR THR C . n C 1 49 PHE 49 50 50 PHE PHE C . n D 1 1 LEU 1 2 2 LEU LEU D . n D 1 2 SER 2 3 3 SER SER D . n D 1 3 PRO 3 4 4 PRO PRO D . n D 1 4 SER 4 5 5 SER SER D . n D 1 5 PHE 5 6 6 PHE PHE D . n D 1 6 GLY 6 7 7 GLY GLY D . n D 1 7 SER 7 8 8 SER SER D . n D 1 8 THR 8 9 9 THR THR D . n D 1 9 TRP 9 10 10 TRP TRP D . n D 1 10 SER 10 11 11 SER SER D . n D 1 11 THR 11 12 12 THR THR D . n D 1 12 GLY 12 13 13 GLY GLY D . n D 1 13 THR 13 14 14 THR THR D . n D 1 14 THR 14 15 15 THR THR D . n D 1 15 ASN 15 16 16 ASN ASN D . n D 1 16 ALA 16 17 17 ALA ALA D . n D 1 17 VAL 17 18 18 VAL VAL D . n D 1 18 GLU 18 19 19 GLU GLU D . n D 1 19 ASP 19 20 20 ASP ASP D . n D 1 20 SER 20 21 21 SER SER D . n D 1 21 PHE 21 22 22 PHE PHE D . n D 1 22 PHE 22 23 23 PHE PHE D . n D 1 23 GLN 23 24 24 GLN GLN D . n D 1 24 GLY 24 25 25 GLY GLY D . n D 1 25 ILE 25 26 26 ILE ILE D . n D 1 26 THR 26 27 27 THR THR D . n D 1 27 PRO 27 28 28 PRO PRO D . n D 1 28 VAL 28 29 29 VAL VAL D . n D 1 29 ASN 29 30 30 ASN ASN D . n D 1 30 GLY 30 31 31 GLY GLY D . n D 1 31 THR 31 32 32 THR THR D . n D 1 32 MET 32 33 33 MET MET D . n D 1 33 LEU 33 34 34 LEU LEU D . n D 1 34 PHE 34 35 35 PHE PHE D . n D 1 35 GLN 35 36 36 GLN GLN D . n D 1 36 ASN 36 37 37 ASN ASN D . n D 1 37 PHE 37 38 38 PHE PHE D . n D 1 38 PRO 38 39 39 PRO PRO D . n D 1 39 HIS 39 40 40 HIS HIS D . n D 1 40 HIS 40 41 41 HIS HIS D . n D 1 41 VAL 41 42 42 VAL VAL D . n D 1 42 ASN 42 43 43 ASN ASN D . n D 1 43 PRO 43 44 44 PRO PRO D . n D 1 44 VAL 44 45 45 VAL VAL D . n D 1 45 PHE 45 46 46 PHE PHE D . n D 1 46 GLY 46 47 47 GLY GLY D . n D 1 47 GLY 47 48 48 GLY GLY D . n D 1 48 THR 48 49 49 THR THR D . n D 1 49 PHE 49 50 50 PHE PHE D . n E 1 1 LEU 1 2 2 LEU LEU E . n E 1 2 SER 2 3 3 SER SER E . n E 1 3 PRO 3 4 4 PRO PRO E . n E 1 4 SER 4 5 5 SER SER E . n E 1 5 PHE 5 6 6 PHE PHE E . n E 1 6 GLY 6 7 7 GLY GLY E . n E 1 7 SER 7 8 8 SER SER E . n E 1 8 THR 8 9 9 THR THR E . n E 1 9 TRP 9 10 10 TRP TRP E . n E 1 10 SER 10 11 11 SER SER E . n E 1 11 THR 11 12 12 THR THR E . n E 1 12 GLY 12 13 13 GLY GLY E . n E 1 13 THR 13 14 14 THR THR E . n E 1 14 THR 14 15 15 THR THR E . n E 1 15 ASN 15 16 16 ASN ASN E . n E 1 16 ALA 16 17 17 ALA ALA E . n E 1 17 VAL 17 18 18 VAL VAL E . n E 1 18 GLU 18 19 19 GLU GLU E . n E 1 19 ASP 19 20 20 ASP ASP E . n E 1 20 SER 20 21 21 SER SER E . n E 1 21 PHE 21 22 22 PHE PHE E . n E 1 22 PHE 22 23 23 PHE PHE E . n E 1 23 GLN 23 24 24 GLN GLN E . n E 1 24 GLY 24 25 25 GLY GLY E . n E 1 25 ILE 25 26 26 ILE ILE E . n E 1 26 THR 26 27 27 THR THR E . n E 1 27 PRO 27 28 28 PRO PRO E . n E 1 28 VAL 28 29 29 VAL VAL E . n E 1 29 ASN 29 30 30 ASN ASN E . n E 1 30 GLY 30 31 31 GLY GLY E . n E 1 31 THR 31 32 32 THR THR E . n E 1 32 MET 32 33 33 MET MET E . n E 1 33 LEU 33 34 34 LEU LEU E . n E 1 34 PHE 34 35 35 PHE PHE E . n E 1 35 GLN 35 36 36 GLN GLN E . n E 1 36 ASN 36 37 37 ASN ASN E . n E 1 37 PHE 37 38 38 PHE PHE E . n E 1 38 PRO 38 39 39 PRO PRO E . n E 1 39 HIS 39 40 40 HIS HIS E . n E 1 40 HIS 40 41 41 HIS HIS E . n E 1 41 VAL 41 42 42 VAL VAL E . n E 1 42 ASN 42 43 43 ASN ASN E . n E 1 43 PRO 43 44 44 PRO PRO E . n E 1 44 VAL 44 45 45 VAL VAL E . n E 1 45 PHE 45 46 46 PHE PHE E . n E 1 46 GLY 46 47 47 GLY GLY E . n E 1 47 GLY 47 48 48 GLY GLY E . n E 1 48 THR 48 49 49 THR THR E . n E 1 49 PHE 49 50 50 PHE PHE E . n # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.19.2_4158: _software.pdbx_ordinal 1 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8SPA _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8SPA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8SPA _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8SPA _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.006 ? 1940 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.753 ? 2655 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 10.816 ? 620 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.045 ? 285 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.005 ? 350 ? f_plane_restr ? ? # _struct.entry_id 8SPA _struct.title 'Structural insights into cellular control of the human CPEB3 prion, functionally regulated by a labile-amyloid-forming segment' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8SPA _struct_keywords.text 'prion, amyloid, reversible, helical, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CPEB3_HUMAN _struct_ref.pdbx_db_accession Q8NE35 _struct_ref.pdbx_db_isoform Q8NE35-2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code LSPSFGSTWSTGTTNAVEDSFFQGITPVNGTMLFQNFPHHVNPVFGGTF _struct_ref.pdbx_align_begin 103 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8SPA A 1 ? 49 ? Q8NE35 103 ? 151 ? 2 50 2 1 8SPA B 1 ? 49 ? Q8NE35 103 ? 151 ? 2 50 3 1 8SPA C 1 ? 49 ? Q8NE35 103 ? 151 ? 2 50 4 1 8SPA D 1 ? 49 ? Q8NE35 103 ? 151 ? 2 50 5 1 8SPA E 1 ? 49 ? Q8NE35 103 ? 151 ? 2 50 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR D 31 ? ASN D 36 ? THR D 32 ASN D 37 AA1 2 THR B 31 ? ASN B 36 ? THR B 32 ASN B 37 AA1 3 THR A 31 ? ASN A 36 ? THR A 32 ASN A 37 AA1 4 THR C 31 ? ASN C 36 ? THR C 32 ASN C 37 AA1 5 THR E 31 ? ASN E 36 ? THR E 32 ASN E 37 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O PHE D 34 ? O PHE D 35 N GLN B 35 ? N GLN B 36 AA1 2 3 O PHE B 34 ? O PHE B 35 N GLN A 35 ? N GLN A 36 AA1 3 4 N PHE A 34 ? N PHE A 35 O GLN C 35 ? O GLN C 36 AA1 4 5 N PHE C 34 ? N PHE C 35 O GLN E 35 ? O GLN E 36 # _pdbx_entry_details.entry_id 8SPA _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 38 ? ? -157.47 70.92 2 1 PHE B 38 ? ? -157.54 70.91 3 1 PHE C 38 ? ? -157.54 70.93 4 1 PHE D 38 ? ? -157.46 70.85 5 1 PHE E 38 ? ? -157.48 70.91 # _pdbx_helical_symmetry.entry_id 8SPA _pdbx_helical_symmetry.number_of_operations 5 _pdbx_helical_symmetry.rotation_per_n_subunits -3.32 _pdbx_helical_symmetry.rise_per_n_subunits 4.81 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 1 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8SPA _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8SPA _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.0 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 40329 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Helical assembly of CPEB3 prion-like domain 1' _em_entity_assembly.details 'Truncated CPEB3 prion-like domain generated recombinantly' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8SPA _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode OTHER _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 3000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8SPA _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 4 _em_vitrification.instrument 'FEI VITROBOT MARK I' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8SPA _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 GLN N N N N 47 GLN CA C N S 48 GLN C C N N 49 GLN O O N N 50 GLN CB C N N 51 GLN CG C N N 52 GLN CD C N N 53 GLN OE1 O N N 54 GLN NE2 N N N 55 GLN OXT O N N 56 GLN H H N N 57 GLN H2 H N N 58 GLN HA H N N 59 GLN HB2 H N N 60 GLN HB3 H N N 61 GLN HG2 H N N 62 GLN HG3 H N N 63 GLN HE21 H N N 64 GLN HE22 H N N 65 GLN HXT H N N 66 GLU N N N N 67 GLU CA C N S 68 GLU C C N N 69 GLU O O N N 70 GLU CB C N N 71 GLU CG C N N 72 GLU CD C N N 73 GLU OE1 O N N 74 GLU OE2 O N N 75 GLU OXT O N N 76 GLU H H N N 77 GLU H2 H N N 78 GLU HA H N N 79 GLU HB2 H N N 80 GLU HB3 H N N 81 GLU HG2 H N N 82 GLU HG3 H N N 83 GLU HE2 H N N 84 GLU HXT H N N 85 GLY N N N N 86 GLY CA C N N 87 GLY C C N N 88 GLY O O N N 89 GLY OXT O N N 90 GLY H H N N 91 GLY H2 H N N 92 GLY HA2 H N N 93 GLY HA3 H N N 94 GLY HXT H N N 95 HIS N N N N 96 HIS CA C N S 97 HIS C C N N 98 HIS O O N N 99 HIS CB C N N 100 HIS CG C Y N 101 HIS ND1 N Y N 102 HIS CD2 C Y N 103 HIS CE1 C Y N 104 HIS NE2 N Y N 105 HIS OXT O N N 106 HIS H H N N 107 HIS H2 H N N 108 HIS HA H N N 109 HIS HB2 H N N 110 HIS HB3 H N N 111 HIS HD1 H N N 112 HIS HD2 H N N 113 HIS HE1 H N N 114 HIS HE2 H N N 115 HIS HXT H N N 116 ILE N N N N 117 ILE CA C N S 118 ILE C C N N 119 ILE O O N N 120 ILE CB C N S 121 ILE CG1 C N N 122 ILE CG2 C N N 123 ILE CD1 C N N 124 ILE OXT O N N 125 ILE H H N N 126 ILE H2 H N N 127 ILE HA H N N 128 ILE HB H N N 129 ILE HG12 H N N 130 ILE HG13 H N N 131 ILE HG21 H N N 132 ILE HG22 H N N 133 ILE HG23 H N N 134 ILE HD11 H N N 135 ILE HD12 H N N 136 ILE HD13 H N N 137 ILE HXT H N N 138 LEU N N N N 139 LEU CA C N S 140 LEU C C N N 141 LEU O O N N 142 LEU CB C N N 143 LEU CG C N N 144 LEU CD1 C N N 145 LEU CD2 C N N 146 LEU OXT O N N 147 LEU H H N N 148 LEU H2 H N N 149 LEU HA H N N 150 LEU HB2 H N N 151 LEU HB3 H N N 152 LEU HG H N N 153 LEU HD11 H N N 154 LEU HD12 H N N 155 LEU HD13 H N N 156 LEU HD21 H N N 157 LEU HD22 H N N 158 LEU HD23 H N N 159 LEU HXT H N N 160 MET N N N N 161 MET CA C N S 162 MET C C N N 163 MET O O N N 164 MET CB C N N 165 MET CG C N N 166 MET SD S N N 167 MET CE C N N 168 MET OXT O N N 169 MET H H N N 170 MET H2 H N N 171 MET HA H N N 172 MET HB2 H N N 173 MET HB3 H N N 174 MET HG2 H N N 175 MET HG3 H N N 176 MET HE1 H N N 177 MET HE2 H N N 178 MET HE3 H N N 179 MET HXT H N N 180 PHE N N N N 181 PHE CA C N S 182 PHE C C N N 183 PHE O O N N 184 PHE CB C N N 185 PHE CG C Y N 186 PHE CD1 C Y N 187 PHE CD2 C Y N 188 PHE CE1 C Y N 189 PHE CE2 C Y N 190 PHE CZ C Y N 191 PHE OXT O N N 192 PHE H H N N 193 PHE H2 H N N 194 PHE HA H N N 195 PHE HB2 H N N 196 PHE HB3 H N N 197 PHE HD1 H N N 198 PHE HD2 H N N 199 PHE HE1 H N N 200 PHE HE2 H N N 201 PHE HZ H N N 202 PHE HXT H N N 203 PRO N N N N 204 PRO CA C N S 205 PRO C C N N 206 PRO O O N N 207 PRO CB C N N 208 PRO CG C N N 209 PRO CD C N N 210 PRO OXT O N N 211 PRO H H N N 212 PRO HA H N N 213 PRO HB2 H N N 214 PRO HB3 H N N 215 PRO HG2 H N N 216 PRO HG3 H N N 217 PRO HD2 H N N 218 PRO HD3 H N N 219 PRO HXT H N N 220 SER N N N N 221 SER CA C N S 222 SER C C N N 223 SER O O N N 224 SER CB C N N 225 SER OG O N N 226 SER OXT O N N 227 SER H H N N 228 SER H2 H N N 229 SER HA H N N 230 SER HB2 H N N 231 SER HB3 H N N 232 SER HG H N N 233 SER HXT H N N 234 THR N N N N 235 THR CA C N S 236 THR C C N N 237 THR O O N N 238 THR CB C N R 239 THR OG1 O N N 240 THR CG2 C N N 241 THR OXT O N N 242 THR H H N N 243 THR H2 H N N 244 THR HA H N N 245 THR HB H N N 246 THR HG1 H N N 247 THR HG21 H N N 248 THR HG22 H N N 249 THR HG23 H N N 250 THR HXT H N N 251 TRP N N N N 252 TRP CA C N S 253 TRP C C N N 254 TRP O O N N 255 TRP CB C N N 256 TRP CG C Y N 257 TRP CD1 C Y N 258 TRP CD2 C Y N 259 TRP NE1 N Y N 260 TRP CE2 C Y N 261 TRP CE3 C Y N 262 TRP CZ2 C Y N 263 TRP CZ3 C Y N 264 TRP CH2 C Y N 265 TRP OXT O N N 266 TRP H H N N 267 TRP H2 H N N 268 TRP HA H N N 269 TRP HB2 H N N 270 TRP HB3 H N N 271 TRP HD1 H N N 272 TRP HE1 H N N 273 TRP HE3 H N N 274 TRP HZ2 H N N 275 TRP HZ3 H N N 276 TRP HH2 H N N 277 TRP HXT H N N 278 VAL N N N N 279 VAL CA C N S 280 VAL C C N N 281 VAL O O N N 282 VAL CB C N N 283 VAL CG1 C N N 284 VAL CG2 C N N 285 VAL OXT O N N 286 VAL H H N N 287 VAL H2 H N N 288 VAL HA H N N 289 VAL HB H N N 290 VAL HG11 H N N 291 VAL HG12 H N N 292 VAL HG13 H N N 293 VAL HG21 H N N 294 VAL HG22 H N N 295 VAL HG23 H N N 296 VAL HXT H N N 297 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 GLN N CA sing N N 44 GLN N H sing N N 45 GLN N H2 sing N N 46 GLN CA C sing N N 47 GLN CA CB sing N N 48 GLN CA HA sing N N 49 GLN C O doub N N 50 GLN C OXT sing N N 51 GLN CB CG sing N N 52 GLN CB HB2 sing N N 53 GLN CB HB3 sing N N 54 GLN CG CD sing N N 55 GLN CG HG2 sing N N 56 GLN CG HG3 sing N N 57 GLN CD OE1 doub N N 58 GLN CD NE2 sing N N 59 GLN NE2 HE21 sing N N 60 GLN NE2 HE22 sing N N 61 GLN OXT HXT sing N N 62 GLU N CA sing N N 63 GLU N H sing N N 64 GLU N H2 sing N N 65 GLU CA C sing N N 66 GLU CA CB sing N N 67 GLU CA HA sing N N 68 GLU C O doub N N 69 GLU C OXT sing N N 70 GLU CB CG sing N N 71 GLU CB HB2 sing N N 72 GLU CB HB3 sing N N 73 GLU CG CD sing N N 74 GLU CG HG2 sing N N 75 GLU CG HG3 sing N N 76 GLU CD OE1 doub N N 77 GLU CD OE2 sing N N 78 GLU OE2 HE2 sing N N 79 GLU OXT HXT sing N N 80 GLY N CA sing N N 81 GLY N H sing N N 82 GLY N H2 sing N N 83 GLY CA C sing N N 84 GLY CA HA2 sing N N 85 GLY CA HA3 sing N N 86 GLY C O doub N N 87 GLY C OXT sing N N 88 GLY OXT HXT sing N N 89 HIS N CA sing N N 90 HIS N H sing N N 91 HIS N H2 sing N N 92 HIS CA C sing N N 93 HIS CA CB sing N N 94 HIS CA HA sing N N 95 HIS C O doub N N 96 HIS C OXT sing N N 97 HIS CB CG sing N N 98 HIS CB HB2 sing N N 99 HIS CB HB3 sing N N 100 HIS CG ND1 sing Y N 101 HIS CG CD2 doub Y N 102 HIS ND1 CE1 doub Y N 103 HIS ND1 HD1 sing N N 104 HIS CD2 NE2 sing Y N 105 HIS CD2 HD2 sing N N 106 HIS CE1 NE2 sing Y N 107 HIS CE1 HE1 sing N N 108 HIS NE2 HE2 sing N N 109 HIS OXT HXT sing N N 110 ILE N CA sing N N 111 ILE N H sing N N 112 ILE N H2 sing N N 113 ILE CA C sing N N 114 ILE CA CB sing N N 115 ILE CA HA sing N N 116 ILE C O doub N N 117 ILE C OXT sing N N 118 ILE CB CG1 sing N N 119 ILE CB CG2 sing N N 120 ILE CB HB sing N N 121 ILE CG1 CD1 sing N N 122 ILE CG1 HG12 sing N N 123 ILE CG1 HG13 sing N N 124 ILE CG2 HG21 sing N N 125 ILE CG2 HG22 sing N N 126 ILE CG2 HG23 sing N N 127 ILE CD1 HD11 sing N N 128 ILE CD1 HD12 sing N N 129 ILE CD1 HD13 sing N N 130 ILE OXT HXT sing N N 131 LEU N CA sing N N 132 LEU N H sing N N 133 LEU N H2 sing N N 134 LEU CA C sing N N 135 LEU CA CB sing N N 136 LEU CA HA sing N N 137 LEU C O doub N N 138 LEU C OXT sing N N 139 LEU CB CG sing N N 140 LEU CB HB2 sing N N 141 LEU CB HB3 sing N N 142 LEU CG CD1 sing N N 143 LEU CG CD2 sing N N 144 LEU CG HG sing N N 145 LEU CD1 HD11 sing N N 146 LEU CD1 HD12 sing N N 147 LEU CD1 HD13 sing N N 148 LEU CD2 HD21 sing N N 149 LEU CD2 HD22 sing N N 150 LEU CD2 HD23 sing N N 151 LEU OXT HXT sing N N 152 MET N CA sing N N 153 MET N H sing N N 154 MET N H2 sing N N 155 MET CA C sing N N 156 MET CA CB sing N N 157 MET CA HA sing N N 158 MET C O doub N N 159 MET C OXT sing N N 160 MET CB CG sing N N 161 MET CB HB2 sing N N 162 MET CB HB3 sing N N 163 MET CG SD sing N N 164 MET CG HG2 sing N N 165 MET CG HG3 sing N N 166 MET SD CE sing N N 167 MET CE HE1 sing N N 168 MET CE HE2 sing N N 169 MET CE HE3 sing N N 170 MET OXT HXT sing N N 171 PHE N CA sing N N 172 PHE N H sing N N 173 PHE N H2 sing N N 174 PHE CA C sing N N 175 PHE CA CB sing N N 176 PHE CA HA sing N N 177 PHE C O doub N N 178 PHE C OXT sing N N 179 PHE CB CG sing N N 180 PHE CB HB2 sing N N 181 PHE CB HB3 sing N N 182 PHE CG CD1 doub Y N 183 PHE CG CD2 sing Y N 184 PHE CD1 CE1 sing Y N 185 PHE CD1 HD1 sing N N 186 PHE CD2 CE2 doub Y N 187 PHE CD2 HD2 sing N N 188 PHE CE1 CZ doub Y N 189 PHE CE1 HE1 sing N N 190 PHE CE2 CZ sing Y N 191 PHE CE2 HE2 sing N N 192 PHE CZ HZ sing N N 193 PHE OXT HXT sing N N 194 PRO N CA sing N N 195 PRO N CD sing N N 196 PRO N H sing N N 197 PRO CA C sing N N 198 PRO CA CB sing N N 199 PRO CA HA sing N N 200 PRO C O doub N N 201 PRO C OXT sing N N 202 PRO CB CG sing N N 203 PRO CB HB2 sing N N 204 PRO CB HB3 sing N N 205 PRO CG CD sing N N 206 PRO CG HG2 sing N N 207 PRO CG HG3 sing N N 208 PRO CD HD2 sing N N 209 PRO CD HD3 sing N N 210 PRO OXT HXT sing N N 211 SER N CA sing N N 212 SER N H sing N N 213 SER N H2 sing N N 214 SER CA C sing N N 215 SER CA CB sing N N 216 SER CA HA sing N N 217 SER C O doub N N 218 SER C OXT sing N N 219 SER CB OG sing N N 220 SER CB HB2 sing N N 221 SER CB HB3 sing N N 222 SER OG HG sing N N 223 SER OXT HXT sing N N 224 THR N CA sing N N 225 THR N H sing N N 226 THR N H2 sing N N 227 THR CA C sing N N 228 THR CA CB sing N N 229 THR CA HA sing N N 230 THR C O doub N N 231 THR C OXT sing N N 232 THR CB OG1 sing N N 233 THR CB CG2 sing N N 234 THR CB HB sing N N 235 THR OG1 HG1 sing N N 236 THR CG2 HG21 sing N N 237 THR CG2 HG22 sing N N 238 THR CG2 HG23 sing N N 239 THR OXT HXT sing N N 240 TRP N CA sing N N 241 TRP N H sing N N 242 TRP N H2 sing N N 243 TRP CA C sing N N 244 TRP CA CB sing N N 245 TRP CA HA sing N N 246 TRP C O doub N N 247 TRP C OXT sing N N 248 TRP CB CG sing N N 249 TRP CB HB2 sing N N 250 TRP CB HB3 sing N N 251 TRP CG CD1 doub Y N 252 TRP CG CD2 sing Y N 253 TRP CD1 NE1 sing Y N 254 TRP CD1 HD1 sing N N 255 TRP CD2 CE2 doub Y N 256 TRP CD2 CE3 sing Y N 257 TRP NE1 CE2 sing Y N 258 TRP NE1 HE1 sing N N 259 TRP CE2 CZ2 sing Y N 260 TRP CE3 CZ3 doub Y N 261 TRP CE3 HE3 sing N N 262 TRP CZ2 CH2 doub Y N 263 TRP CZ2 HZ2 sing N N 264 TRP CZ3 CH2 sing Y N 265 TRP CZ3 HZ3 sing N N 266 TRP CH2 HH2 sing N N 267 TRP OXT HXT sing N N 268 VAL N CA sing N N 269 VAL N H sing N N 270 VAL N H2 sing N N 271 VAL CA C sing N N 272 VAL CA CB sing N N 273 VAL CA HA sing N N 274 VAL C O doub N N 275 VAL C OXT sing N N 276 VAL CB CG1 sing N N 277 VAL CB CG2 sing N N 278 VAL CB HB sing N N 279 VAL CG1 HG11 sing N N 280 VAL CG1 HG12 sing N N 281 VAL CG1 HG13 sing N N 282 VAL CG2 HG21 sing N N 283 VAL CG2 HG22 sing N N 284 VAL CG2 HG23 sing N N 285 VAL OXT HXT sing N N 286 # _em_admin.current_status REL _em_admin.deposition_date 2023-05-02 _em_admin.deposition_site RCSB _em_admin.entry_id 8SPA _em_admin.last_update 2025-05-21 _em_admin.map_release_date 2024-05-08 _em_admin.title 'Structural insights into cellular control of the human CPEB3 prion, functionally regulated by a labile-amyloid-forming segment' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 125 mM NaCl 1 'sodium chloride' 1 50 mM ? 2 Tris-Base 1 10 mM HK2PO4 3 'dipotassium phosphate' 1 5 mM ? 4 'glutamic acid' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag YES _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 23 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 866768 _em_entity_assembly_recombinant.organism ;Escherichia coli 'BL21-Gold(DE3)pLysS AG' ; _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit -3.32 _em_helical_entity.axial_rise_per_subunit 4.81 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 52 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images ? # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 20 _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU 2.8 MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? RELION 3 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? PHENIX ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? RELION 3 # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM128867 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM1295410 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM007185 3 'National Science Foundation (NSF, United States)' 'United States' DMR-1548924 4 'The Pew Charitable Trusts' 'United States' JAR 5 'David and Lucile Packard Foundation' 'United States' JAR 6 # _atom_sites.entry_id 8SPA _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #