HEADER HYDROLASE 03-MAY-23 8SPL TITLE PROTEINASE K MULTICONFORMER MODEL AT 343K COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEINASE K; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENDOPEPTIDASE K,TRITIRACHIUM ALKALINE PROTEINASE; COMPND 5 EC: 3.4.21.64; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ALA-ALA-ALA-SER-VAL-LYS; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARENGYODONTIUM ALBUM; SOURCE 3 ORGANISM_TAXID: 37998; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 7 ORGANISM_TAXID: 32630 KEYWDS SERINE HYDROLASE, SUBTILISIN-LIKE, METAL ION BINDING, A/B THREE- KEYWDS 2 LAYERED SANDWICHES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.DU,S.WANKOWICZ,F.YABUKARSKI,T.DOUKOV,D.HERSCHLAG,J.S.FRASER REVDAT 2 11-OCT-23 8SPL 1 JRNL REVDAT 1 09-AUG-23 8SPL 0 JRNL AUTH S.DU,S.A.WANKOWICZ,F.YABUKARSKI,T.DOUKOV,D.HERSCHLAG, JRNL AUTH 2 J.S.FRASER JRNL TITL REFINEMENT OF MULTICONFORMER ENSEMBLE MODELS FROM JRNL TITL 2 MULTI-TEMPERATURE X-RAY DIFFRACTION DATA. JRNL REF METHODS ENZYMOL. V. 688 223 2023 JRNL REFN ISSN 0076-6879 JRNL PMID 37748828 JRNL DOI 10.1016/BS.MIE.2023.06.009 REMARK 2 REMARK 2 RESOLUTION. 1.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 73823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.710 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.24 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4862 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3887 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.4189 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2070 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.211 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SPL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000274237. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 343 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03316 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74345 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.210 REMARK 200 RESOLUTION RANGE LOW (A) : 35.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.650 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEINASE K WAS DISSOLVED AT PH 7.5 REMARK 280 TO 30 MG/ML IN A 50 MM TRIS BUFFER . THE PROTEIN WAS REMARK 280 CRYSTALLIZED USING A HANGING DROP SETUP ON A 24 WELL VDX PLATE REMARK 280 WITH SEALANT AND 22 MM THICK SILICONIZED CIRCLE COVER SLIDES BY REMARK 280 MIXING EQUAL AMOUNTS OF PROTEIN SOLUTION WITH AMMONIUM SULFATE., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.05450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.20150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.20150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.08175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.20150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.20150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.02725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.20150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.20150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 78.08175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.20150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.20150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.02725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.05450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 472 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 519 LIES ON A SPECIAL POSITION. REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 THR A 4 N CA C O CB OG1 CG2 REMARK 480 ASN A 5 N CA C O CB CG OD1 REMARK 480 ASN A 5 ND2 REMARK 480 ALA A 6 N CA C O CB REMARK 480 PRO A 7 N CA C O CB CG CD REMARK 480 TRP A 8 N CA C O CB CG CD1 REMARK 480 TRP A 8 CD2 NE1 CE2 CE3 CZ2 CZ3 CH2 REMARK 480 GLY A 9 N CA C O REMARK 480 LEU A 10 N CA C O CB CG CD1 REMARK 480 LEU A 10 CD2 REMARK 480 ALA A 11 N CA C O CB REMARK 480 ARG A 12 N CA C O CB CG CD REMARK 480 ARG A 12 NE CZ NH1 NH2 REMARK 480 ILE A 13 N CA C O CB CG1 CG2 REMARK 480 ILE A 13 CD1 REMARK 480 SER A 14 N CA C O CB OG REMARK 480 SER A 15 N CA C O CB OG REMARK 480 THR A 16 N CA C O CB OG1 CG2 REMARK 480 SER A 17 N CA C O CB OG REMARK 480 PRO A 18 N CA C O CB CG CD REMARK 480 GLY A 19 N CA C O REMARK 480 THR A 20 N CA C O CB OG1 CG2 REMARK 480 SER A 21 N CA C O CB OG REMARK 480 THR A 22 N CA C O CB OG1 CG2 REMARK 480 TYR A 23 N CA C O CB CG CD1 REMARK 480 TYR A 23 CD2 CE1 CE2 CZ OH REMARK 480 TYR A 24 N CA C O CB CG CD1 REMARK 480 TYR A 24 CD2 CE1 CE2 CZ OH REMARK 480 TYR A 25 N CA C O CB CG CD1 REMARK 480 TYR A 25 CD2 CE1 CE2 CZ OH REMARK 480 GLY A 32 N CA C O REMARK 480 SER A 33 N CA C O CB OG REMARK 480 CYS A 34 N CA C O CB SG REMARK 480 VAL A 35 N CA C O CB CG1 CG2 REMARK 480 TYR A 36 N CA C O CB CG CD1 REMARK 480 TYR A 36 CD2 CE1 CE2 CZ OH REMARK 480 VAL A 37 N CA C O CB CG1 CG2 REMARK 480 ILE A 38 N CA C O CB CG1 CG2 REMARK 480 ILE A 38 CD1 REMARK 480 ASP A 39 N CA C O CB CG OD1 REMARK 480 ASP A 39 OD2 REMARK 480 THR A 40 N CA C O CB OG1 CG2 REMARK 480 GLY A 41 N CA C O REMARK 480 ILE A 42 N CA C O CB CG1 CG2 REMARK 480 ILE A 42 CD1 REMARK 480 ALA A 44 N CA C O CB REMARK 480 SER A 45 N CA C O CB OG REMARK 480 HIS A 46 N CA C O CB CG ND1 REMARK 480 HIS A 46 CD2 CE1 NE2 REMARK 480 PRO A 47 N CA C O CB CG CD REMARK 480 GLU A 48 N CA C O CB CG CD REMARK 480 GLU A 48 OE1 OE2 REMARK 480 PHE A 49 N CA C O CB CG CD1 REMARK 480 PHE A 49 CD2 CE1 CE2 CZ REMARK 480 GLY A 51 N CA C O REMARK 480 ARG A 52 N CA C O CB CG CD REMARK 480 ARG A 52 NE CZ NH1 NH2 REMARK 480 ALA A 53 N CA C O CB REMARK 480 GLN A 54 N CA C O CB CG CD REMARK 480 GLN A 54 OE1 NE2 REMARK 480 MET A 55 N CA C O CB CG SD REMARK 480 MET A 55 CE REMARK 480 VAL A 56 N CA C O CB CG1 CG2 REMARK 480 THR A 58 N CA C O CB OG1 CG2 REMARK 480 TYR A 59 N CA C O CB CG CD1 REMARK 480 TYR A 59 CD2 CE1 CE2 CZ OH REMARK 480 TYR A 60 N CA C O CB CG CD1 REMARK 480 TYR A 60 CD2 CE1 CE2 CZ OH REMARK 480 SER A 62 N CA C O CB OG REMARK 480 SER A 63 N CA C O CB OG REMARK 480 ASP A 65 N CA C O CB CG OD1 REMARK 480 ASP A 65 OD2 REMARK 480 GLY A 66 N CA C O REMARK 480 ASN A 67 N CA C O CB CG OD1 REMARK 480 ASN A 67 ND2 REMARK 480 GLY A 68 N CA C O REMARK 480 HIS A 69 N CA C O CB CG ND1 REMARK 480 HIS A 69 CD2 CE1 NE2 REMARK 480 GLY A 70 N CA C O REMARK 480 THR A 71 N CA C O CB OG1 CG2 REMARK 480 VAL A 157 N CA C O CB CG1 CG2 REMARK 480 GLY A 160 N CA C O REMARK 480 SER A 190 N CA C O CB OG REMARK 480 SER A 191 N CA C O CB OG REMARK 480 SER A 193 N CA C O CB OG REMARK 480 LEU A 199 N CA C O CB CG CD1 REMARK 480 LEU A 199 CD2 REMARK 480 PHE A 202 N CA C O CB CG CD1 REMARK 480 PHE A 202 CD2 CE1 CE2 CZ REMARK 480 ILE A 208 N CA C O CB CG1 CG2 REMARK 480 ILE A 208 CD1 REMARK 480 THR A 217 N CA C O CB OG1 CG2 REMARK 480 SER A 219 N CA C O CB OG REMARK 480 ALA A 245 N CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 39 -143.06 -157.56 REMARK 500 ASP A 39 -146.72 -171.43 REMARK 500 ASP A 39 -153.15 -171.72 REMARK 500 ASP A 39 -136.07 -160.55 REMARK 500 GLN A 54 144.95 -173.95 REMARK 500 ASN A 67 -53.52 -133.81 REMARK 500 ASN A 67 -52.66 -130.22 REMARK 500 VAL A 77 -72.51 -76.98 REMARK 500 SER A 132 59.13 -98.16 REMARK 500 SER A 132 60.62 -101.01 REMARK 500 ASN A 161 53.43 -107.43 REMARK 500 TYR A 195 -156.22 -133.55 REMARK 500 ASP A 207 73.82 64.42 REMARK 500 PRO A 265 159.70 -49.44 REMARK 500 ASN A 270 66.30 -113.62 REMARK 500 ASN A 276 26.78 47.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 174 O REMARK 620 2 VAL A 177 O 86.8 REMARK 620 3 THR A 179 OG1 94.7 94.7 REMARK 620 4 ASP A 200 OD2 151.4 64.7 90.5 REMARK 620 5 HOH A 403 O 112.3 51.3 132.5 47.8 REMARK 620 6 HOH A 502 O 113.2 105.4 146.1 74.4 54.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 175 O REMARK 620 2 VAL A 177 O 89.3 REMARK 620 3 ASP A 200 OD1 139.7 129.7 REMARK 620 4 ASP A 200 OD2 170.0 83.1 49.5 REMARK 620 5 HOH A 502 O 80.3 152.9 68.4 103.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 177 O REMARK 620 2 ASP A 200 OD1 92.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 177 O REMARK 620 2 VAL A 198 O 146.3 REMARK 620 3 ASP A 200 OD2 66.8 82.3 REMARK 620 4 HOH A 502 O 108.8 71.8 72.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 198 O REMARK 620 2 ASP A 200 OD1 68.5 REMARK 620 3 HOH A 403 O 117.1 69.3 REMARK 620 4 HOH A 502 O 80.0 97.4 61.9 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8SOG RELATED DB: PDB REMARK 900 RELATED ID: 8SOU RELATED DB: PDB REMARK 900 RELATED ID: 8SOV RELATED DB: PDB DBREF 8SPL A 1 279 UNP P06873 PRTK_PARAQ 106 384 DBREF 8SPL B 1 6 PDB 8SPL 8SPL 1 6 SEQADV 8SPL ASP A 207 UNP P06873 SER 312 CONFLICT SEQRES 1 A 279 ALA ALA GLN THR ASN ALA PRO TRP GLY LEU ALA ARG ILE SEQRES 2 A 279 SER SER THR SER PRO GLY THR SER THR TYR TYR TYR ASP SEQRES 3 A 279 GLU SER ALA GLY GLN GLY SER CYS VAL TYR VAL ILE ASP SEQRES 4 A 279 THR GLY ILE GLU ALA SER HIS PRO GLU PHE GLU GLY ARG SEQRES 5 A 279 ALA GLN MET VAL LYS THR TYR TYR TYR SER SER ARG ASP SEQRES 6 A 279 GLY ASN GLY HIS GLY THR HIS CYS ALA GLY THR VAL GLY SEQRES 7 A 279 SER ARG THR TYR GLY VAL ALA LYS LYS THR GLN LEU PHE SEQRES 8 A 279 GLY VAL LYS VAL LEU ASP ASP ASN GLY SER GLY GLN TYR SEQRES 9 A 279 SER THR ILE ILE ALA GLY MET ASP PHE VAL ALA SER ASP SEQRES 10 A 279 LYS ASN ASN ARG ASN CYS PRO LYS GLY VAL VAL ALA SER SEQRES 11 A 279 LEU SER LEU GLY GLY GLY TYR SER SER SER VAL ASN SER SEQRES 12 A 279 ALA ALA ALA ARG LEU GLN SER SER GLY VAL MET VAL ALA SEQRES 13 A 279 VAL ALA ALA GLY ASN ASN ASN ALA ASP ALA ARG ASN TYR SEQRES 14 A 279 SER PRO ALA SER GLU PRO SER VAL CYS THR VAL GLY ALA SEQRES 15 A 279 SER ASP ARG TYR ASP ARG ARG SER SER PHE SER ASN TYR SEQRES 16 A 279 GLY SER VAL LEU ASP ILE PHE GLY PRO GLY THR ASP ILE SEQRES 17 A 279 LEU SER THR TRP ILE GLY GLY SER THR ARG SER ILE SER SEQRES 18 A 279 GLY THR SER MET ALA THR PRO HIS VAL ALA GLY LEU ALA SEQRES 19 A 279 ALA TYR LEU MET THR LEU GLY LYS THR THR ALA ALA SER SEQRES 20 A 279 ALA CYS ARG TYR ILE ALA ASP THR ALA ASN LYS GLY ASP SEQRES 21 A 279 LEU SER ASN ILE PRO PHE GLY THR VAL ASN LEU LEU ALA SEQRES 22 A 279 TYR ASN ASN TYR GLN ALA SEQRES 1 B 6 ALA ALA ALA SER VAL LYS HET SO4 A 301 5 HET CA A 302 6 HET SO4 A 303 5 HET SO4 A 304 5 HETNAM SO4 SULFATE ION HETNAM CA CALCIUM ION FORMUL 3 SO4 3(O4 S 2-) FORMUL 4 CA CA 2+ FORMUL 7 HOH *127(H2 O) HELIX 1 AA1 PRO A 7 ILE A 13 1 7 HELIX 2 AA2 GLY A 68 SER A 79 1 12 HELIX 3 AA3 TYR A 104 LYS A 118 1 15 HELIX 4 AA4 ASN A 119 ARG A 121 5 3 HELIX 5 AA5 SER A 138 SER A 151 1 14 HELIX 6 AA6 ASP A 165 ARG A 167 5 3 HELIX 7 AA7 GLY A 222 LEU A 240 1 19 HELIX 8 AA8 SER A 247 THR A 255 1 9 SHEET 1 AA1 2 ALA A 2 GLN A 3 0 SHEET 2 AA1 2 TYR A 23 TYR A 24 -1 O TYR A 23 N GLN A 3 SHEET 1 AA2 7 ALA A 53 THR A 58 0 SHEET 2 AA2 7 GLN A 89 LYS A 94 1 O LYS A 94 N LYS A 57 SHEET 3 AA2 7 SER A 33 ASP A 39 1 N VAL A 37 O PHE A 91 SHEET 4 AA2 7 GLY A 126 LEU A 131 1 O VAL A 128 N TYR A 36 SHEET 5 AA2 7 MET A 154 ALA A 158 1 O ALA A 156 N LEU A 131 SHEET 6 AA2 7 CYS A 178 SER A 183 1 O CYS A 178 N VAL A 157 SHEET 7 AA2 7 ILE A 201 PRO A 204 1 O GLY A 203 N GLY A 181 SHEET 1 AA3 4 SER A 101 GLN A 103 0 SHEET 2 AA3 4 ALA B 2 VAL B 5 -1 O ALA B 3 N GLY A 102 SHEET 3 AA3 4 LEU A 133 GLY A 136 -1 N GLY A 134 O SER B 4 SHEET 4 AA3 4 TYR A 169 SER A 170 -1 O SER A 170 N GLY A 135 SHEET 1 AA4 2 ILE A 208 TRP A 212 0 SHEET 2 AA4 2 SER A 216 ILE A 220 -1 O ILE A 220 N ILE A 208 SHEET 1 AA5 2 ASN A 257 LYS A 258 0 SHEET 2 AA5 2 LEU A 271 LEU A 272 -1 O LEU A 272 N ASN A 257 SSBOND 1 CYS A 34 CYS A 123 1555 1555 2.03 SSBOND 2 CYS A 178 CYS A 249 1555 1555 2.03 LINK O BGLU A 174 CA B CA A 302 1555 1555 2.90 LINK O APRO A 175 CA A CA A 302 1555 1555 2.91 LINK O AVAL A 177 CA A CA A 302 1555 1555 2.32 LINK O BVAL A 177 CA B CA A 302 1555 1555 2.96 LINK O CVAL A 177 CA C CA A 302 1555 1555 2.59 LINK O DVAL A 177 CA D CA A 302 1555 1555 2.69 LINK OG1BTHR A 179 CA B CA A 302 1555 1555 2.77 LINK O DVAL A 198 CA D CA A 302 1555 1555 2.93 LINK O EVAL A 198 CA E CA A 302 1555 1555 2.53 LINK OD1AASP A 200 CA A CA A 302 1555 1555 2.83 LINK OD1CASP A 200 CA C CA A 302 1555 1555 2.86 LINK OD1EASP A 200 CA E CA A 302 1555 1555 2.65 LINK OD1FASP A 200 CA F CA A 302 1555 1555 2.59 LINK OD2AASP A 200 CA A CA A 302 1555 1555 2.30 LINK OD2BASP A 200 CA B CA A 302 1555 1555 3.04 LINK OD2DASP A 200 CA D CA A 302 1555 1555 2.88 LINK CA B CA A 302 O BHOH A 403 1555 1555 2.93 LINK CA E CA A 302 O EHOH A 403 1555 1555 2.88 LINK CA A CA A 302 O AHOH A 502 1555 1555 2.32 LINK CA B CA A 302 O BHOH A 502 1555 1555 2.62 LINK CA D CA A 302 O DHOH A 502 1555 1555 2.99 LINK CA E CA A 302 O EHOH A 502 1555 1555 2.46 CISPEP 1 SER A 170 PRO A 171 0 4.30 CISPEP 2 SER A 170 PRO A 171 0 -3.30 CISPEP 3 SER A 170 PRO A 171 0 2.85 CRYST1 68.403 68.403 104.109 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014619 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014619 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009605 0.00000