HEADER HYDROLASE/INHIBITOR,ANTIBIOTIC 04-MAY-23 8SQ8 TITLE X-RAY CRYSTAL STRUCTURE OF ACINETOBACTER BAUMANII BETA-LACTAMASE TITLE 2 VARIANT OXA-109 IN COMPLEX WITH DORIPENEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE OXA-109; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: CARBAPENEM-HYDROLYZING OXACILLINASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 GENE: BLA-OXA-109, BLAOXA-109; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET 24A KEYWDS ACINETOBACTER BETA-LACTAMASE COMPLEX CARBAPENEM DORIPENEM, HYDROLASE, KEYWDS 2 HYDROLASE-INHIBITOR, ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.A.POWERS,D.A.LEONARD,C.M.JUNE,A.SZARECKA,Z.WAWRZAK REVDAT 2 29-MAY-24 8SQ8 1 JRNL REVDAT 1 22-MAY-24 8SQ8 0 JRNL AUTH Z.L.KLAMER,C.M.JUNE,Z.WAWRZAK,M.A.TARACILA,J.A.GREY, JRNL AUTH 2 A.M.I.BENN,C.P.RUSSELL,R.A.BONOMO,R.A.POWERS,D.A.LEONARD, JRNL AUTH 3 A.SZARECKA JRNL TITL STRUCTURAL AND DYNAMIC FEATURES OF ACINETOBACTER BAUMANNII JRNL TITL 2 OXA-66 BETA-LACTAMASE EXPLAIN ITS STABILITY AND EVOLUTION OF JRNL TITL 3 NOVEL VARIANTS. JRNL REF J.MOL.BIOL. V. 436 68603 2024 JRNL REFN ESSN 1089-8638 JRNL PMID 38729259 JRNL DOI 10.1016/J.JMB.2024.168603 REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 25.610 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 59387 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 3016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9400 - 6.1500 0.95 3010 147 0.1955 0.1994 REMARK 3 2 6.1400 - 4.8800 0.94 2887 151 0.1764 0.2176 REMARK 3 3 4.8800 - 4.2700 0.92 2803 172 0.1556 0.2272 REMARK 3 4 4.2700 - 3.8800 0.94 2772 149 0.1781 0.2382 REMARK 3 5 3.8800 - 3.6000 0.94 2847 147 0.2026 0.2649 REMARK 3 6 3.6000 - 3.3900 0.94 2808 144 0.2267 0.3099 REMARK 3 7 3.3900 - 3.2200 0.95 2811 143 0.2380 0.2425 REMARK 3 8 3.2200 - 3.0800 0.94 2826 174 0.2721 0.3089 REMARK 3 9 3.0800 - 2.9600 0.95 2812 151 0.2716 0.2735 REMARK 3 10 2.9600 - 2.8600 0.95 2829 148 0.2797 0.3231 REMARK 3 11 2.8600 - 2.7700 0.95 2795 161 0.3104 0.2996 REMARK 3 12 2.7700 - 2.6900 0.95 2771 144 0.3100 0.3659 REMARK 3 13 2.6900 - 2.6200 0.95 2851 152 0.3230 0.3371 REMARK 3 14 2.6200 - 2.5600 0.95 2795 149 0.3274 0.4245 REMARK 3 15 2.5600 - 2.5000 0.94 2783 166 0.3362 0.3487 REMARK 3 16 2.5000 - 2.4400 0.95 2798 156 0.3613 0.2877 REMARK 3 17 2.4400 - 2.4000 0.95 2826 136 0.3541 0.3498 REMARK 3 18 2.4000 - 2.3500 0.96 2772 126 0.3569 0.3450 REMARK 3 19 2.3500 - 2.3100 0.95 2853 151 0.3675 0.3806 REMARK 3 20 2.3100 - 2.2700 0.94 2723 148 0.3524 0.3680 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.672 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 7671 REMARK 3 ANGLE : 0.680 10428 REMARK 3 CHIRALITY : 0.042 1171 REMARK 3 PLANARITY : 0.003 1333 REMARK 3 DIHEDRAL : 9.993 1108 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SQ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000274214. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59493 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.09 M HEPES, PH 7.5, 1.26 M SODIUM REMARK 280 CITRATE, 10% V/V GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -Y,-X,-Z+2/3 REMARK 290 5555 -X+Y,Y,-Z+1/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 149.70200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 299.40400 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 299.40400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 149.70200 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 25 REMARK 465 ASN A 26 REMARK 465 PRO A 27 REMARK 465 ASN A 28 REMARK 465 HIS A 29 REMARK 465 SER A 30 REMARK 465 ALA A 31 REMARK 465 SER A 32 REMARK 465 LYS A 33 REMARK 465 MET B 25 REMARK 465 ASN B 26 REMARK 465 PRO B 27 REMARK 465 ASN B 28 REMARK 465 HIS B 29 REMARK 465 SER B 30 REMARK 465 ALA B 31 REMARK 465 SER B 32 REMARK 465 LYS B 33 REMARK 465 SER B 34 REMARK 465 MET C 25 REMARK 465 ASN C 26 REMARK 465 PRO C 27 REMARK 465 ASN C 28 REMARK 465 HIS C 29 REMARK 465 SER C 30 REMARK 465 ALA C 31 REMARK 465 SER C 32 REMARK 465 LYS C 33 REMARK 465 MET D 25 REMARK 465 ASN D 26 REMARK 465 PRO D 27 REMARK 465 ASN D 28 REMARK 465 HIS D 29 REMARK 465 SER D 30 REMARK 465 ALA D 31 REMARK 465 SER D 32 REMARK 465 LYS D 33 REMARK 465 SER D 34 REMARK 465 ASP D 35 REMARK 465 VAL D 36 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 35 CG OD1 OD2 REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 LYS A 40 CG CD CE NZ REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 GLU A 269 CG CD OE1 OE2 REMARK 470 GLN A 270 CG CD OE1 NE2 REMARK 470 ASP B 35 CG OD1 OD2 REMARK 470 LYS B 37 CG CD CE NZ REMARK 470 GLU B 39 CG CD OE1 OE2 REMARK 470 LYS B 40 CG CD CE NZ REMARK 470 LYS B 42 CG CD CE NZ REMARK 470 LYS B 103 CG CD CE NZ REMARK 470 GLN B 130 CG CD OE1 NE2 REMARK 470 LYS B 146 CG CD CE NZ REMARK 470 LYS B 209 CG CD CE NZ REMARK 470 ASN B 225 CG OD1 ND2 REMARK 470 LYS B 253 CG CD CE NZ REMARK 470 SER B 257 OG REMARK 470 GLU B 269 CG CD OE1 OE2 REMARK 470 GLN B 270 CG CD OE1 NE2 REMARK 470 ASP C 35 CG OD1 OD2 REMARK 470 LYS C 37 CG CD CE NZ REMARK 470 GLU C 39 CG CD OE1 OE2 REMARK 470 LYS C 40 CG CD CE NZ REMARK 470 ASN C 43 CG OD1 ND2 REMARK 470 PHE C 45 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU C 47 CG CD OE1 OE2 REMARK 470 GLN C 63 CG CD OE1 NE2 REMARK 470 LEU C 69 CG CD1 CD2 REMARK 470 SER C 73 OG REMARK 470 LYS C 125 CG CD CE NZ REMARK 470 LYS C 195 CG CD CE NZ REMARK 470 ASN C 210 CG OD1 ND2 REMARK 470 LYS C 252 CG CD CE NZ REMARK 470 LYS C 253 CG CD CE NZ REMARK 470 SER C 257 OG REMARK 470 SER C 258 OG REMARK 470 GLU C 262 CG CD OE1 OE2 REMARK 470 LYS C 266 CG CD CE NZ REMARK 470 GLU C 269 CG CD OE1 OE2 REMARK 470 GLN C 270 CG CD OE1 NE2 REMARK 470 LYS D 37 CG CD CE NZ REMARK 470 GLU D 39 CG CD OE1 OE2 REMARK 470 LYS D 40 CG CD CE NZ REMARK 470 ILE D 41 CG1 CG2 CD1 REMARK 470 LYS D 42 CG CD CE NZ REMARK 470 LEU D 44 CG CD1 CD2 REMARK 470 PHE D 45 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU D 47 CG CD OE1 OE2 REMARK 470 HIS D 49 CG ND1 CD2 CE1 NE2 REMARK 470 THR D 50 OG1 CG2 REMARK 470 THR D 51 OG1 CG2 REMARK 470 LEU D 69 CG CD1 CD2 REMARK 470 LYS D 108 CG CD CE NZ REMARK 470 LYS D 116 CG CD CE NZ REMARK 470 GLN D 227 CG CD OE1 NE2 REMARK 470 LYS D 253 CG CD CE NZ REMARK 470 ILE D 255 CG1 CG2 CD1 REMARK 470 LYS D 261 CG CD CE NZ REMARK 470 ILE D 263 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER D 80 OAD 4J6 D 301 2.13 REMARK 500 OE1 GLU D 207 OH TYR D 265 2.18 REMARK 500 OG SER B 80 OAD 4J6 B 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 79 -136.96 59.27 REMARK 500 PRO A 191 48.58 -72.36 REMARK 500 ILE A 206 -66.28 -106.65 REMARK 500 MET A 251 91.02 -68.50 REMARK 500 ALA B 79 -138.76 60.13 REMARK 500 ASN B 164 15.03 -157.81 REMARK 500 PRO B 191 47.01 -71.92 REMARK 500 ILE B 206 -62.51 -104.75 REMARK 500 ALA C 79 -140.20 59.12 REMARK 500 GLU C 115 57.03 -97.82 REMARK 500 ASN C 164 13.40 -147.14 REMARK 500 ILE C 206 -65.88 -103.07 REMARK 500 TRP C 220 107.14 -161.12 REMARK 500 LEU C 231 92.61 -160.07 REMARK 500 ALA D 79 -132.51 58.31 REMARK 500 ASN D 164 13.21 -152.64 REMARK 500 ILE D 206 -70.19 -103.78 REMARK 500 TRP D 220 95.78 -165.96 REMARK 500 REMARK 500 REMARK: NULL DBREF 8SQ8 A 26 274 UNP A8JZR7 A8JZR7_ACIBA 26 274 DBREF 8SQ8 B 26 274 UNP A8JZR7 A8JZR7_ACIBA 26 274 DBREF 8SQ8 C 26 274 UNP A8JZR7 A8JZR7_ACIBA 26 274 DBREF 8SQ8 D 26 274 UNP A8JZR7 A8JZR7_ACIBA 26 274 SEQADV 8SQ8 MET A 25 UNP A8JZR7 INITIATING METHIONINE SEQADV 8SQ8 MET B 25 UNP A8JZR7 INITIATING METHIONINE SEQADV 8SQ8 MET C 25 UNP A8JZR7 INITIATING METHIONINE SEQADV 8SQ8 MET D 25 UNP A8JZR7 INITIATING METHIONINE SEQRES 1 A 250 MET ASN PRO ASN HIS SER ALA SER LYS SER ASP VAL LYS SEQRES 2 A 250 ALA GLU LYS ILE LYS ASN LEU PHE ASN GLU ALA HIS THR SEQRES 3 A 250 THR GLY VAL LEU VAL ILE GLN GLN GLY GLN THR GLN GLN SEQRES 4 A 250 SER TYR GLY ASN ASP LEU ALA ARG ALA SER THR GLU TYR SEQRES 5 A 250 VAL PRO ALA SER THR PHE KCX MET LEU ASN ALA LEU ILE SEQRES 6 A 250 GLY LEU GLU HIS HIS LYS ALA THR THR THR GLU VAL PHE SEQRES 7 A 250 LYS TRP ASP GLY LYS LYS ARG LEU PHE PRO GLU TRP GLU SEQRES 8 A 250 LYS ASP MET THR LEU GLY ASP ALA MET LYS ALA SER ALA SEQRES 9 A 250 ILE GLN VAL TYR GLN ASP LEU ALA ARG ARG ILE GLY LEU SEQRES 10 A 250 GLU LEU MET SER LYS GLU VAL LYS ARG VAL GLY TYR GLY SEQRES 11 A 250 ASN ALA ASP ILE GLY THR GLN VAL ASP ASN PHE TRP LEU SEQRES 12 A 250 VAL GLY PRO LEU LYS ILE THR PRO GLN GLN GLU ALA GLN SEQRES 13 A 250 PHE ALA TYR LYS LEU ALA ASN LYS THR LEU PRO PHE SER SEQRES 14 A 250 GLN LYS VAL GLN ASP GLU VAL GLN SER MET LEU PHE ILE SEQRES 15 A 250 GLU GLU LYS ASN GLY ASN LYS ILE TYR ALA LYS SER GLY SEQRES 16 A 250 TRP GLY TRP ASP VAL ASN PRO GLN VAL GLY TRP LEU THR SEQRES 17 A 250 GLY TRP VAL VAL GLN PRO GLN GLY ASN ILE VAL ALA PHE SEQRES 18 A 250 SER LEU ASN LEU GLU MET LYS LYS GLY ILE PRO SER SER SEQRES 19 A 250 VAL ARG LYS GLU ILE THR TYR LYS SER LEU GLU GLN LEU SEQRES 20 A 250 GLY ILE LEU SEQRES 1 B 250 MET ASN PRO ASN HIS SER ALA SER LYS SER ASP VAL LYS SEQRES 2 B 250 ALA GLU LYS ILE LYS ASN LEU PHE ASN GLU ALA HIS THR SEQRES 3 B 250 THR GLY VAL LEU VAL ILE GLN GLN GLY GLN THR GLN GLN SEQRES 4 B 250 SER TYR GLY ASN ASP LEU ALA ARG ALA SER THR GLU TYR SEQRES 5 B 250 VAL PRO ALA SER THR PHE KCX MET LEU ASN ALA LEU ILE SEQRES 6 B 250 GLY LEU GLU HIS HIS LYS ALA THR THR THR GLU VAL PHE SEQRES 7 B 250 LYS TRP ASP GLY LYS LYS ARG LEU PHE PRO GLU TRP GLU SEQRES 8 B 250 LYS ASP MET THR LEU GLY ASP ALA MET LYS ALA SER ALA SEQRES 9 B 250 ILE GLN VAL TYR GLN ASP LEU ALA ARG ARG ILE GLY LEU SEQRES 10 B 250 GLU LEU MET SER LYS GLU VAL LYS ARG VAL GLY TYR GLY SEQRES 11 B 250 ASN ALA ASP ILE GLY THR GLN VAL ASP ASN PHE TRP LEU SEQRES 12 B 250 VAL GLY PRO LEU LYS ILE THR PRO GLN GLN GLU ALA GLN SEQRES 13 B 250 PHE ALA TYR LYS LEU ALA ASN LYS THR LEU PRO PHE SER SEQRES 14 B 250 GLN LYS VAL GLN ASP GLU VAL GLN SER MET LEU PHE ILE SEQRES 15 B 250 GLU GLU LYS ASN GLY ASN LYS ILE TYR ALA LYS SER GLY SEQRES 16 B 250 TRP GLY TRP ASP VAL ASN PRO GLN VAL GLY TRP LEU THR SEQRES 17 B 250 GLY TRP VAL VAL GLN PRO GLN GLY ASN ILE VAL ALA PHE SEQRES 18 B 250 SER LEU ASN LEU GLU MET LYS LYS GLY ILE PRO SER SER SEQRES 19 B 250 VAL ARG LYS GLU ILE THR TYR LYS SER LEU GLU GLN LEU SEQRES 20 B 250 GLY ILE LEU SEQRES 1 C 250 MET ASN PRO ASN HIS SER ALA SER LYS SER ASP VAL LYS SEQRES 2 C 250 ALA GLU LYS ILE LYS ASN LEU PHE ASN GLU ALA HIS THR SEQRES 3 C 250 THR GLY VAL LEU VAL ILE GLN GLN GLY GLN THR GLN GLN SEQRES 4 C 250 SER TYR GLY ASN ASP LEU ALA ARG ALA SER THR GLU TYR SEQRES 5 C 250 VAL PRO ALA SER THR PHE KCX MET LEU ASN ALA LEU ILE SEQRES 6 C 250 GLY LEU GLU HIS HIS LYS ALA THR THR THR GLU VAL PHE SEQRES 7 C 250 LYS TRP ASP GLY LYS LYS ARG LEU PHE PRO GLU TRP GLU SEQRES 8 C 250 LYS ASP MET THR LEU GLY ASP ALA MET LYS ALA SER ALA SEQRES 9 C 250 ILE GLN VAL TYR GLN ASP LEU ALA ARG ARG ILE GLY LEU SEQRES 10 C 250 GLU LEU MET SER LYS GLU VAL LYS ARG VAL GLY TYR GLY SEQRES 11 C 250 ASN ALA ASP ILE GLY THR GLN VAL ASP ASN PHE TRP LEU SEQRES 12 C 250 VAL GLY PRO LEU LYS ILE THR PRO GLN GLN GLU ALA GLN SEQRES 13 C 250 PHE ALA TYR LYS LEU ALA ASN LYS THR LEU PRO PHE SER SEQRES 14 C 250 GLN LYS VAL GLN ASP GLU VAL GLN SER MET LEU PHE ILE SEQRES 15 C 250 GLU GLU LYS ASN GLY ASN LYS ILE TYR ALA LYS SER GLY SEQRES 16 C 250 TRP GLY TRP ASP VAL ASN PRO GLN VAL GLY TRP LEU THR SEQRES 17 C 250 GLY TRP VAL VAL GLN PRO GLN GLY ASN ILE VAL ALA PHE SEQRES 18 C 250 SER LEU ASN LEU GLU MET LYS LYS GLY ILE PRO SER SER SEQRES 19 C 250 VAL ARG LYS GLU ILE THR TYR LYS SER LEU GLU GLN LEU SEQRES 20 C 250 GLY ILE LEU SEQRES 1 D 250 MET ASN PRO ASN HIS SER ALA SER LYS SER ASP VAL LYS SEQRES 2 D 250 ALA GLU LYS ILE LYS ASN LEU PHE ASN GLU ALA HIS THR SEQRES 3 D 250 THR GLY VAL LEU VAL ILE GLN GLN GLY GLN THR GLN GLN SEQRES 4 D 250 SER TYR GLY ASN ASP LEU ALA ARG ALA SER THR GLU TYR SEQRES 5 D 250 VAL PRO ALA SER THR PHE KCX MET LEU ASN ALA LEU ILE SEQRES 6 D 250 GLY LEU GLU HIS HIS LYS ALA THR THR THR GLU VAL PHE SEQRES 7 D 250 LYS TRP ASP GLY LYS LYS ARG LEU PHE PRO GLU TRP GLU SEQRES 8 D 250 LYS ASP MET THR LEU GLY ASP ALA MET LYS ALA SER ALA SEQRES 9 D 250 ILE GLN VAL TYR GLN ASP LEU ALA ARG ARG ILE GLY LEU SEQRES 10 D 250 GLU LEU MET SER LYS GLU VAL LYS ARG VAL GLY TYR GLY SEQRES 11 D 250 ASN ALA ASP ILE GLY THR GLN VAL ASP ASN PHE TRP LEU SEQRES 12 D 250 VAL GLY PRO LEU LYS ILE THR PRO GLN GLN GLU ALA GLN SEQRES 13 D 250 PHE ALA TYR LYS LEU ALA ASN LYS THR LEU PRO PHE SER SEQRES 14 D 250 GLN LYS VAL GLN ASP GLU VAL GLN SER MET LEU PHE ILE SEQRES 15 D 250 GLU GLU LYS ASN GLY ASN LYS ILE TYR ALA LYS SER GLY SEQRES 16 D 250 TRP GLY TRP ASP VAL ASN PRO GLN VAL GLY TRP LEU THR SEQRES 17 D 250 GLY TRP VAL VAL GLN PRO GLN GLY ASN ILE VAL ALA PHE SEQRES 18 D 250 SER LEU ASN LEU GLU MET LYS LYS GLY ILE PRO SER SER SEQRES 19 D 250 VAL ARG LYS GLU ILE THR TYR LYS SER LEU GLU GLN LEU SEQRES 20 D 250 GLY ILE LEU MODRES 8SQ8 KCX A 83 LYS MODIFIED RESIDUE MODRES 8SQ8 KCX B 83 LYS MODIFIED RESIDUE MODRES 8SQ8 KCX C 83 LYS MODIFIED RESIDUE MODRES 8SQ8 KCX D 83 LYS MODIFIED RESIDUE HET KCX A 83 12 HET KCX B 83 12 HET KCX C 83 12 HET KCX D 83 12 HET 4J6 A 301 27 HET 4J6 B 301 27 HET BCT B 302 4 HET 4J6 C 301 27 HET 4J6 D 301 27 HET BCT D 302 4 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM 4J6 (4R,5S)-5-[(2S,3R)-3-HYDROXY-1-OXOBUTAN-2-YL]-4-METHYL- HETNAM 2 4J6 3-({(3S,5S)-5-[(SULFAMOYLAMINO)METHYL]PYRROLIDIN-3- HETNAM 3 4J6 YL}SULFANYL)-4,5-DIHYDRO-1H-PYRROLE-2-CARBOXYLIC ACID HETNAM BCT BICARBONATE ION HETSYN 4J6 DORIPENEM(OPEN FORM, PYRROLINE TAUTOMER FORM 1, SP2 HETSYN 2 4J6 CONNECTION TO THIO) FORMUL 1 KCX 4(C7 H14 N2 O4) FORMUL 5 4J6 4(C15 H26 N4 O6 S2) FORMUL 7 BCT 2(C H O3 1-) FORMUL 11 HOH *89(H2 O) HELIX 1 AA1 VAL A 36 ALA A 48 1 13 HELIX 2 AA2 ASP A 68 THR A 74 5 7 HELIX 3 AA3 PRO A 78 THR A 81 5 4 HELIX 4 AA4 PHE A 82 HIS A 93 1 12 HELIX 5 AA5 PHE A 111 GLU A 115 5 5 HELIX 6 AA6 LEU A 120 SER A 127 1 8 HELIX 7 AA7 ALA A 128 GLY A 152 1 25 HELIX 8 AA8 THR A 174 ASN A 187 1 14 HELIX 9 AA9 SER A 193 LEU A 204 1 12 HELIX 10 AB1 SER A 257 LEU A 271 1 15 HELIX 11 AB2 VAL B 36 ALA B 48 1 13 HELIX 12 AB3 ASP B 68 THR B 74 5 7 HELIX 13 AB4 PRO B 78 THR B 81 5 4 HELIX 14 AB5 PHE B 82 HIS B 93 1 12 HELIX 15 AB6 PHE B 111 GLU B 115 5 5 HELIX 16 AB7 THR B 119 SER B 127 1 9 HELIX 17 AB8 ALA B 128 GLY B 152 1 25 HELIX 18 AB9 THR B 174 ASN B 187 1 14 HELIX 19 AC1 SER B 193 LEU B 204 1 12 HELIX 20 AC2 SER B 258 LEU B 271 1 14 HELIX 21 AC3 ASP C 35 ALA C 48 1 14 HELIX 22 AC4 ASP C 68 THR C 74 5 7 HELIX 23 AC5 PRO C 78 THR C 81 5 4 HELIX 24 AC6 PHE C 82 HIS C 93 1 12 HELIX 25 AC7 PHE C 111 GLU C 115 5 5 HELIX 26 AC8 THR C 119 SER C 127 1 9 HELIX 27 AC9 ALA C 128 GLY C 152 1 25 HELIX 28 AD1 THR C 174 ASN C 187 1 14 HELIX 29 AD2 SER C 193 LEU C 204 1 12 HELIX 30 AD3 SER C 258 LEU C 271 1 14 HELIX 31 AD4 GLU D 39 ALA D 48 1 10 HELIX 32 AD5 ASP D 68 THR D 74 5 7 HELIX 33 AD6 PRO D 78 THR D 81 5 4 HELIX 34 AD7 PHE D 82 HIS D 93 1 12 HELIX 35 AD8 PHE D 111 GLU D 115 5 5 HELIX 36 AD9 LEU D 120 SER D 127 1 8 HELIX 37 AE1 ALA D 128 GLY D 152 1 25 HELIX 38 AE2 THR D 174 ASN D 187 1 14 HELIX 39 AE3 SER D 193 LEU D 204 1 12 HELIX 40 AE4 SER D 258 LEU D 271 1 14 SHEET 1 AA1 6 THR A 61 GLY A 66 0 SHEET 2 AA1 6 GLY A 52 GLN A 58 -1 N ILE A 56 O GLN A 63 SHEET 3 AA1 6 ILE A 242 GLU A 250 -1 O ASN A 248 N VAL A 53 SHEET 4 AA1 6 VAL A 228 VAL A 236 -1 N GLY A 229 O LEU A 249 SHEET 5 AA1 6 ASN A 212 GLY A 221 -1 N LYS A 217 O THR A 232 SHEET 6 AA1 6 PHE A 205 LYS A 209 -1 N GLU A 207 O ILE A 214 SHEET 1 AA2 2 VAL A 101 PHE A 102 0 SHEET 2 AA2 2 MET A 118 THR A 119 -1 O MET A 118 N PHE A 102 SHEET 1 AA3 6 THR B 61 GLY B 66 0 SHEET 2 AA3 6 GLY B 52 GLN B 58 -1 N ILE B 56 O GLN B 63 SHEET 3 AA3 6 ILE B 242 GLU B 250 -1 O ASN B 248 N VAL B 53 SHEET 4 AA3 6 VAL B 228 VAL B 236 -1 N LEU B 231 O LEU B 247 SHEET 5 AA3 6 ASN B 212 GLY B 221 -1 N GLY B 219 O TRP B 230 SHEET 6 AA3 6 PHE B 205 LYS B 209 -1 N ILE B 206 O ILE B 214 SHEET 1 AA4 6 THR C 61 GLY C 66 0 SHEET 2 AA4 6 GLY C 52 GLN C 58 -1 N ILE C 56 O GLN C 63 SHEET 3 AA4 6 ILE C 242 GLU C 250 -1 O ASN C 248 N VAL C 53 SHEET 4 AA4 6 VAL C 228 VAL C 236 -1 N LEU C 231 O LEU C 247 SHEET 5 AA4 6 ASN C 212 GLY C 221 -1 N GLY C 219 O TRP C 230 SHEET 6 AA4 6 PHE C 205 LYS C 209 -1 N ILE C 206 O ILE C 214 SHEET 1 AA5 6 THR D 61 GLY D 66 0 SHEET 2 AA5 6 GLY D 52 GLN D 58 -1 N LEU D 54 O TYR D 65 SHEET 3 AA5 6 ILE D 242 GLU D 250 -1 O ALA D 244 N GLN D 57 SHEET 4 AA5 6 VAL D 228 VAL D 236 -1 N LEU D 231 O LEU D 247 SHEET 5 AA5 6 ASN D 212 GLY D 221 -1 N LYS D 217 O THR D 232 SHEET 6 AA5 6 PHE D 205 LYS D 209 -1 N ILE D 206 O ILE D 214 SHEET 1 AA6 2 VAL D 101 PHE D 102 0 SHEET 2 AA6 2 MET D 118 THR D 119 -1 O MET D 118 N PHE D 102 LINK OG SER A 80 CAJ 4J6 A 301 1555 1555 1.40 LINK C PHE A 82 N KCX A 83 1555 1555 1.33 LINK C KCX A 83 N MET A 84 1555 1555 1.33 LINK OG SER B 80 CAJ 4J6 B 301 1555 1555 1.38 LINK C PHE B 82 N KCX B 83 1555 1555 1.33 LINK C KCX B 83 N MET B 84 1555 1555 1.33 LINK OG SER C 80 CAJ 4J6 C 301 1555 1555 1.38 LINK C PHE C 82 N KCX C 83 1555 1555 1.33 LINK C KCX C 83 N MET C 84 1555 1555 1.33 LINK OG SER D 80 CAJ 4J6 D 301 1555 1555 1.39 LINK C PHE D 82 N KCX D 83 1555 1555 1.33 LINK C KCX D 83 N MET D 84 1555 1555 1.33 CISPEP 1 ASN A 225 PRO A 226 0 -0.43 CISPEP 2 ASN B 225 PRO B 226 0 1.72 CISPEP 3 ASN C 225 PRO C 226 0 0.05 CISPEP 4 ASN D 225 PRO D 226 0 -1.03 CRYST1 70.249 70.249 449.106 90.00 90.00 120.00 P 31 1 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014235 0.008219 0.000000 0.00000 SCALE2 0.000000 0.016437 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002227 0.00000