HEADER CELL ADHESION 04-MAY-23 8SQX TITLE SOLUTION STRUCTURE OF THE BASAL PILIN SPAB FROM CORYNEBACTERIUM TITLE 2 DIPHTHERIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SURFACE ANCHORED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM DIPHTHERIAE NCTC 13129; SOURCE 3 ORGANISM_TAXID: 257309; SOURCE 4 GENE: DIP2011; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PILIN, BASAL, MINOR, ISOPEPTIDE, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.K.SUE,B.J.MAHONEY,N.A.CHEUNG,R.T.CLUBB REVDAT 4 15-MAY-24 8SQX 1 REMARK REVDAT 3 31-JAN-24 8SQX 1 JRNL REVDAT 2 14-JUN-23 8SQX 1 REMARK REVDAT 1 07-JUN-23 8SQX 0 JRNL AUTH C.K.SUE,N.A.CHEUNG,B.J.MAHONEY,S.A.MCCONNELL,J.M.SCULLY, JRNL AUTH 2 J.Y.FU,C.CHANG,H.TON-THAT,J.A.LOO,R.T.CLUBB JRNL TITL THE BASAL AND MAJOR PILINS IN THE CORYNEBACTERIUM JRNL TITL 2 DIPHTHERIAE SPAA PILUS ADOPT SIMILAR STRUCTURES THAT JRNL TITL 3 COMPETITIVELY REACT WITH THE PILIN POLYMERASE. JRNL REF BIOPOLYMERS V. 115 23539 2024 JRNL REFN ESSN 1079-0282 JRNL PMID 37227047 JRNL DOI 10.1002/BIP.23539 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 3.6, PROCHECK / PROCHECK-NMR REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), LASKOWSKI, MACARTHUR, SMITH, JONES, REMARK 3 HUTCHINSON, MORRIS, MOSS AND THORNTON (PROCHECK / REMARK 3 PROCHECK-NMR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SQX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000274286. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-13C; U-15N] SPAB, 50 REMARK 210 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 0.01 % SODIUM REMARK 210 AZIDE, 93% H2O/7% D2O; 1.2 MM [U- REMARK 210 13C; U-15N] SPAB, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.01 % SODIUM AZIDE, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HNCO; 3D HBHA(CO)NH; 3D REMARK 210 HNHA; 3D HNHB; 3D H(CCO)NH; 3D REMARK 210 HCCH-COSY; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD; AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH 3.6, CARA 1.9.1.7, REMARK 210 XIPP 1.21.7, UNIO, TOPSPIN, REMARK 210 NMRPIPE, NMRFAM-SPARKY, TALOS-N REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 38 76.94 176.82 REMARK 500 1 PHE A 40 -98.16 -129.04 REMARK 500 1 ASN A 112 91.90 -69.61 REMARK 500 1 ALA A 143 51.30 -117.28 REMARK 500 1 THR A 144 171.62 55.89 REMARK 500 1 PRO A 145 -175.86 -54.04 REMARK 500 2 ALA A 41 73.47 -172.55 REMARK 500 2 HIS A 48 74.94 176.73 REMARK 500 3 ALA A 41 29.42 47.37 REMARK 500 3 HIS A 48 47.20 -176.14 REMARK 500 3 ASP A 110 97.54 -61.43 REMARK 500 3 ALA A 143 -159.98 -151.57 REMARK 500 4 ALA A 41 15.41 59.13 REMARK 500 4 HIS A 48 -161.19 -124.44 REMARK 500 4 THR A 144 161.12 56.23 REMARK 500 4 ASN A 149 -95.81 53.23 REMARK 500 5 ALA A 38 62.31 -176.05 REMARK 500 5 HIS A 48 -81.70 -136.73 REMARK 500 5 ASN A 49 26.41 -167.66 REMARK 500 5 ASP A 110 96.91 -63.10 REMARK 500 5 ASN A 112 91.01 -68.48 REMARK 500 6 ALA A 38 82.79 175.59 REMARK 500 6 PHE A 40 99.50 -166.30 REMARK 500 6 HIS A 48 -76.97 -112.98 REMARK 500 6 ASN A 49 29.50 -174.42 REMARK 500 6 ILE A 127 43.94 -78.70 REMARK 500 6 ASN A 149 -169.20 49.18 REMARK 500 7 ALA A 38 -48.29 -138.53 REMARK 500 7 ALA A 39 -154.75 71.12 REMARK 500 7 PHE A 40 -63.17 74.86 REMARK 500 7 HIS A 48 91.95 -174.68 REMARK 500 7 ASN A 49 -56.72 -171.33 REMARK 500 7 PRO A 145 -73.10 -65.21 REMARK 500 7 ALA A 147 -57.60 177.07 REMARK 500 7 ASN A 149 -154.64 59.73 REMARK 500 8 ALA A 38 -35.75 -157.76 REMARK 500 8 ALA A 39 19.77 58.99 REMARK 500 8 PHE A 40 80.51 58.05 REMARK 500 8 PRO A 45 84.85 -26.93 REMARK 500 8 ASN A 49 -20.82 170.38 REMARK 500 8 ASP A 110 98.14 -67.40 REMARK 500 9 ALA A 38 -36.37 -134.91 REMARK 500 9 PHE A 40 -57.94 -141.11 REMARK 500 9 ALA A 41 57.59 -109.86 REMARK 500 9 ASN A 149 -91.20 55.92 REMARK 500 10 ALA A 38 -86.12 -117.39 REMARK 500 10 PHE A 40 -76.82 -170.34 REMARK 500 10 ASP A 110 99.51 -64.78 REMARK 500 10 ASN A 149 -88.82 60.34 REMARK 500 11 PHE A 40 -53.69 -155.83 REMARK 500 REMARK 500 THIS ENTRY HAS 105 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26336 RELATED DB: BMRB DBREF 8SQX A 25 150 UNP Q6NF83 Q6NF83_CORDI 25 150 SEQRES 1 A 126 GLN GLU ALA ASN THR LEU VAL ILE ASP LEU GLU PRO PRO SEQRES 2 A 126 ALA ALA PHE ALA ASP ASP GLN PRO GLN GLY HIS ASN ILE SEQRES 3 A 126 ASP VAL THR VAL ALA LYS LEU HIS ASN ILE ASP PRO GLU SEQRES 4 A 126 ASP HIS GLU ARG ILE ARG ALA LEU GLN ARG ASN GLY VAL SEQRES 5 A 126 PRO SER THR ILE SER GLU GLU GLN PRO HIS THR ALA ARG SEQRES 6 A 126 THR ASP ALA THR GLY THR ALA THR ILE THR ASN LEU PRO SEQRES 7 A 126 PRO GLY THR TYR VAL ILE ARG ASP THR ASN THR THR LYS SEQRES 8 A 126 PRO ARG PHE SER PRO LEU VAL ILE PRO LEU GLY ILE ASP SEQRES 9 A 126 THR THR SER PRO THR MET THR LEU ARG PRO LYS LEU ILE SEQRES 10 A 126 ASP ALA THR PRO GLY ALA PRO ASN VAL HELIX 1 AA1 ASP A 64 GLY A 75 1 12 SHEET 1 AA1 3 THR A 95 THR A 99 0 SHEET 2 AA1 3 THR A 29 ASP A 33 -1 N LEU A 30 O ILE A 98 SHEET 3 AA1 3 MET A 134 LEU A 136 1 O MET A 134 N THR A 29 SHEET 1 AA2 4 HIS A 86 THR A 90 0 SHEET 2 AA2 4 ILE A 50 LEU A 57 -1 N VAL A 52 O ALA A 88 SHEET 3 AA2 4 GLY A 104 ASP A 110 -1 O THR A 105 N LEU A 57 SHEET 4 AA2 4 LEU A 121 LEU A 125 -1 O LEU A 121 N ILE A 108 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1