HEADER IMMUNE SYSTEM 08-MAY-23 8SRZ TITLE STRUCTURE OF A BACTERIAL DEATH-LIKE DOMAIN FROM LYSOBACTER ENZYMOGENES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE SERINE PROTEASE FE772_23065; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRYPSIN-LIKE PROTEASE 2; COMPND 5 EC: 3.4.21.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LYSOBACTER ENZYMOGENES; SOURCE 3 ORGANISM_TAXID: 69; SOURCE 4 GENE: FE772_23065, GA0399710_4915, GLE_4745; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DEATH FOLD, SCAFFOLD, ADAPTOR, CARD, PYD, DD, DED, PROGRAMMED CELL KEYWDS 2 DEATH, PYROPTOSIS, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.G.JOHNSON,P.J.KRANZUSCH REVDAT 2 19-JUL-23 8SRZ 1 JRNL REVDAT 1 07-JUN-23 8SRZ 0 JRNL AUTH T.WEIN,A.G.JOHNSON,A.MILLMAN,K.LANGE,E.YIRMIYA,R.HADARY, JRNL AUTH 2 J.GARB,F.STEINRUECKE,A.B.HILL,P.J.KRANZUSCH,R.SOREK JRNL TITL CARD-LIKE DOMAINS MEDIATE ANTI-PHAGE DEFENSE IN BACTERIAL JRNL TITL 2 GASDERMIN SYSTEMS. JRNL REF BIORXIV 2023 JRNL REFN ISSN 2692-8205 JRNL PMID 37398489 JRNL DOI 10.1101/2023.05.28.542683 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 64038 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.9200 - 3.0100 1.00 4519 146 0.1506 0.1668 REMARK 3 2 3.0100 - 2.3900 1.00 4499 143 0.1586 0.1860 REMARK 3 3 2.3900 - 2.0900 1.00 4468 145 0.1433 0.1652 REMARK 3 4 2.0900 - 1.9000 1.00 4499 143 0.1538 0.1711 REMARK 3 5 1.9000 - 1.7600 1.00 4435 144 0.1674 0.1914 REMARK 3 6 1.7600 - 1.6600 1.00 4462 151 0.1601 0.1786 REMARK 3 7 1.6600 - 1.5700 0.99 4430 143 0.1589 0.1706 REMARK 3 8 1.5700 - 1.5100 0.99 4469 143 0.1559 0.1546 REMARK 3 9 1.5100 - 1.4500 0.99 4439 140 0.1715 0.1894 REMARK 3 10 1.4500 - 1.4000 0.99 4393 138 0.1902 0.2398 REMARK 3 11 1.4000 - 1.3500 0.98 4362 141 0.2027 0.1849 REMARK 3 12 1.3500 - 1.3200 0.98 4413 141 0.1932 0.2121 REMARK 3 13 1.3200 - 1.2800 0.97 4360 140 0.1996 0.2196 REMARK 3 14 1.2800 - 1.2500 0.96 4294 138 0.2278 0.2527 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.126 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.662 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 1434 REMARK 3 ANGLE : 1.549 1948 REMARK 3 CHIRALITY : 0.107 206 REMARK 3 PLANARITY : 0.020 258 REMARK 3 DIHEDRAL : 13.102 510 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5203 21.2612 37.4173 REMARK 3 T TENSOR REMARK 3 T11: 0.2288 T22: 0.1977 REMARK 3 T33: 0.2036 T12: 0.0633 REMARK 3 T13: -0.0116 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 0.1134 L22: 0.3149 REMARK 3 L33: 0.0822 L12: 0.0266 REMARK 3 L13: -0.0028 L23: -0.1121 REMARK 3 S TENSOR REMARK 3 S11: 0.1019 S12: 0.1932 S13: -0.3625 REMARK 3 S21: -0.3336 S22: -0.0276 S23: 0.1542 REMARK 3 S31: 0.4821 S32: 0.3880 S33: 0.0071 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7575 33.5030 45.4812 REMARK 3 T TENSOR REMARK 3 T11: 0.1539 T22: 0.1276 REMARK 3 T33: 0.1395 T12: 0.0074 REMARK 3 T13: -0.0147 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.1931 L22: -0.0013 REMARK 3 L33: 0.3923 L12: -0.0657 REMARK 3 L13: -0.1149 L23: 0.0076 REMARK 3 S TENSOR REMARK 3 S11: -0.0521 S12: -0.0229 S13: 0.0207 REMARK 3 S21: 0.0246 S22: 0.0123 S23: 0.0185 REMARK 3 S31: -0.2839 S32: -0.0272 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6539 26.3049 47.2755 REMARK 3 T TENSOR REMARK 3 T11: 0.1321 T22: 0.1943 REMARK 3 T33: 0.1523 T12: 0.0214 REMARK 3 T13: -0.0056 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 0.4462 L22: 0.4929 REMARK 3 L33: 0.5122 L12: -0.1189 REMARK 3 L13: 0.3340 L23: 0.2160 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: 0.1268 S13: -0.0195 REMARK 3 S21: -0.0703 S22: -0.0060 S23: -0.0946 REMARK 3 S31: 0.1905 S32: 0.4384 S33: -0.0006 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6235 28.7575 46.7571 REMARK 3 T TENSOR REMARK 3 T11: 0.1197 T22: 0.1301 REMARK 3 T33: 0.1346 T12: 0.0095 REMARK 3 T13: -0.0151 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.1915 L22: 0.0524 REMARK 3 L33: 0.1922 L12: -0.0389 REMARK 3 L13: 0.1469 L23: 0.0810 REMARK 3 S TENSOR REMARK 3 S11: -0.0677 S12: 0.0588 S13: -0.0851 REMARK 3 S21: 0.0010 S22: -0.0105 S23: 0.0878 REMARK 3 S31: 0.0512 S32: -0.0520 S33: -0.0148 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1098 27.5715 38.1050 REMARK 3 T TENSOR REMARK 3 T11: 0.1671 T22: 0.1597 REMARK 3 T33: 0.1714 T12: -0.0256 REMARK 3 T13: -0.0622 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.6033 L22: 0.1247 REMARK 3 L33: 1.0073 L12: 0.2660 REMARK 3 L13: -0.2664 L23: -0.0105 REMARK 3 S TENSOR REMARK 3 S11: -0.1219 S12: 0.1926 S13: 0.0625 REMARK 3 S21: -0.0940 S22: 0.0295 S23: 0.0293 REMARK 3 S31: 0.0222 S32: -0.0572 S33: -0.1273 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5567 25.2712 71.2432 REMARK 3 T TENSOR REMARK 3 T11: 0.1641 T22: 0.1814 REMARK 3 T33: 0.1722 T12: -0.0092 REMARK 3 T13: 0.0282 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.1339 L22: 0.0943 REMARK 3 L33: 0.1200 L12: -0.0908 REMARK 3 L13: -0.0938 L23: 0.0568 REMARK 3 S TENSOR REMARK 3 S11: -0.0819 S12: -0.0712 S13: -0.2572 REMARK 3 S21: 0.1119 S22: 0.0199 S23: -0.0250 REMARK 3 S31: 0.1338 S32: -0.1066 S33: -0.0003 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8145 34.9648 60.4642 REMARK 3 T TENSOR REMARK 3 T11: 0.1556 T22: 0.1440 REMARK 3 T33: 0.1640 T12: -0.0134 REMARK 3 T13: -0.0105 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.0477 L22: 0.1059 REMARK 3 L33: 0.1955 L12: -0.0473 REMARK 3 L13: 0.0278 L23: -0.1277 REMARK 3 S TENSOR REMARK 3 S11: -0.0371 S12: 0.0118 S13: 0.0708 REMARK 3 S21: 0.0051 S22: -0.0151 S23: 0.0237 REMARK 3 S31: -0.1164 S32: 0.0152 S33: -0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0595 30.9345 57.3755 REMARK 3 T TENSOR REMARK 3 T11: 0.1353 T22: 0.1674 REMARK 3 T33: 0.2323 T12: -0.0215 REMARK 3 T13: -0.0161 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 0.2548 L22: 0.6401 REMARK 3 L33: 0.3291 L12: 0.0705 REMARK 3 L13: -0.0826 L23: 0.0139 REMARK 3 S TENSOR REMARK 3 S11: -0.1113 S12: 0.1304 S13: 0.1685 REMARK 3 S21: -0.1506 S22: -0.0345 S23: 0.3648 REMARK 3 S31: 0.0148 S32: -0.2880 S33: 0.0114 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8334 26.4805 63.6470 REMARK 3 T TENSOR REMARK 3 T11: 0.1731 T22: 0.1686 REMARK 3 T33: 0.1735 T12: -0.0320 REMARK 3 T13: -0.0118 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.2055 L22: 0.0664 REMARK 3 L33: 0.1113 L12: 0.0327 REMARK 3 L13: 0.0325 L23: 0.0738 REMARK 3 S TENSOR REMARK 3 S11: -0.0749 S12: -0.0094 S13: 0.0540 REMARK 3 S21: -0.1267 S22: -0.0017 S23: 0.2169 REMARK 3 S31: 0.0399 S32: -0.2625 S33: -0.0002 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0381 27.7568 65.5062 REMARK 3 T TENSOR REMARK 3 T11: 0.1368 T22: 0.1705 REMARK 3 T33: 0.1459 T12: 0.0125 REMARK 3 T13: -0.0145 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.3519 L22: 0.1770 REMARK 3 L33: 0.5204 L12: -0.3454 REMARK 3 L13: 0.0171 L23: -0.0342 REMARK 3 S TENSOR REMARK 3 S11: -0.0427 S12: -0.0249 S13: -0.0995 REMARK 3 S21: -0.0218 S22: 0.0404 S23: -0.1047 REMARK 3 S31: 0.0805 S32: 0.0822 S33: -0.0007 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SRZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000274368. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-22 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64141 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 46.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 17.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.27 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX 1.19.1_4122 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4 M SODIUM FORMATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.56933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.78467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.17700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.39233 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 101.96167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 VAL A 2 REMARK 465 GLN A 3 REMARK 465 GLY A 92 REMARK 465 SER B 1 REMARK 465 VAL B 2 REMARK 465 GLN B 3 REMARK 465 GLY B 92 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLY B 47 O HOH B 101 1.06 REMARK 500 HH21 ARG B 17 O HOH B 102 1.25 REMARK 500 H SER B 48 O HOH B 103 1.30 REMARK 500 HZ2 LYS A 55 O HOH A 102 1.35 REMARK 500 HE ARG B 65 O HOH B 106 1.54 REMARK 500 O HOH A 190 O HOH A 215 1.67 REMARK 500 N GLY B 47 O HOH B 101 1.84 REMARK 500 N ALA A 4 O HOH A 101 1.85 REMARK 500 NZ LYS A 55 O HOH A 102 1.93 REMARK 500 O HOH A 219 O HOH A 237 1.94 REMARK 500 O HOH A 138 O HOH A 199 1.95 REMARK 500 NH2 ARG B 17 O HOH B 102 1.96 REMARK 500 O HOH B 250 O HOH B 251 2.01 REMARK 500 O HOH B 208 O HOH B 253 2.04 REMARK 500 O HOH B 160 O HOH B 216 2.06 REMARK 500 O HOH B 115 O HOH B 234 2.12 REMARK 500 O HOH B 151 O HOH B 208 2.12 REMARK 500 N SER B 48 O HOH B 103 2.12 REMARK 500 N ALA B 4 O HOH B 104 2.13 REMARK 500 O HOH A 250 O HOH A 256 2.14 REMARK 500 O HOH A 131 O HOH A 218 2.15 REMARK 500 O HOH B 181 O HOH B 218 2.17 REMARK 500 O HOH A 184 O HOH A 235 2.18 REMARK 500 OE1 GLN B 90 O HOH B 105 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 269 O HOH B 253 6654 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 65 CG ARG A 65 CD -0.170 REMARK 500 GLU B 10 CB GLU B 10 CG -0.151 REMARK 500 ARG B 31 CG ARG B 31 CD -0.153 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 64 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP B 64 CB - CG - OD1 ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG B 65 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 79 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 271 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 272 DISTANCE = 6.18 ANGSTROMS DBREF1 8SRZ A 2 92 UNP PROT2_LYSEN DBREF2 8SRZ A A0A0S2DN74 5 95 DBREF1 8SRZ B 2 92 UNP PROT2_LYSEN DBREF2 8SRZ B A0A0S2DN74 5 95 SEQADV 8SRZ SER A 1 UNP A0A0S2DN7 EXPRESSION TAG SEQADV 8SRZ SER B 1 UNP A0A0S2DN7 EXPRESSION TAG SEQRES 1 A 92 SER VAL GLN ALA ASP TYR SER ARG ALA GLU ALA LEU ALA SEQRES 2 A 92 ALA TRP THR ARG LEU SER ASP GLU PHE ILE GLY ASN CYS SEQRES 3 A 92 TYR VAL SER VAL ARG PRO ARG HIS ALA PRO ALA TRP GLU SEQRES 4 A 92 VAL VAL VAL ALA SER ALA ALA GLY SER LEU ARG LEU GLU SEQRES 5 A 92 ALA PHE LYS ARG ALA HIS ASP HIS ASP PHE LEU ASP ARG SEQRES 6 A 92 LEU ALA VAL ALA ILE GLY ASN TRP GLU GLN LYS ALA GLN SEQRES 7 A 92 ARG PRO ASP HIS GLU ILE ALA GLN MET LEU ASP GLN VAL SEQRES 8 A 92 GLY SEQRES 1 B 92 SER VAL GLN ALA ASP TYR SER ARG ALA GLU ALA LEU ALA SEQRES 2 B 92 ALA TRP THR ARG LEU SER ASP GLU PHE ILE GLY ASN CYS SEQRES 3 B 92 TYR VAL SER VAL ARG PRO ARG HIS ALA PRO ALA TRP GLU SEQRES 4 B 92 VAL VAL VAL ALA SER ALA ALA GLY SER LEU ARG LEU GLU SEQRES 5 B 92 ALA PHE LYS ARG ALA HIS ASP HIS ASP PHE LEU ASP ARG SEQRES 6 B 92 LEU ALA VAL ALA ILE GLY ASN TRP GLU GLN LYS ALA GLN SEQRES 7 B 92 ARG PRO ASP HIS GLU ILE ALA GLN MET LEU ASP GLN VAL SEQRES 8 B 92 GLY FORMUL 3 HOH *325(H2 O) HELIX 1 AA1 TYR A 6 ALA A 14 1 9 HELIX 2 AA2 SER A 19 ARG A 31 1 13 HELIX 3 AA3 ALA A 37 ALA A 45 1 9 HELIX 4 AA4 SER A 48 HIS A 60 1 13 HELIX 5 AA5 PHE A 62 ALA A 77 1 16 HELIX 6 AA6 PRO A 80 VAL A 91 1 12 HELIX 7 AA7 TYR B 6 THR B 16 1 11 HELIX 8 AA8 SER B 19 ARG B 31 1 13 HELIX 9 AA9 ALA B 37 ALA B 45 1 9 HELIX 10 AB1 SER B 48 HIS B 60 1 13 HELIX 11 AB2 PHE B 62 ALA B 77 1 16 HELIX 12 AB3 PRO B 80 VAL B 91 1 12 CRYST1 58.252 58.252 122.354 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017167 0.009911 0.000000 0.00000 SCALE2 0.000000 0.019823 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008173 0.00000