HEADER HYDROLASE 08-MAY-23 8SSI TITLE STRUCTURE OF BURKHOLDERIA PSEUDOMALLEI DEUBIQUITINASE TSSM IN COMPLEX TITLE 2 WITH UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEUBIQUITINASE TSSM; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: UBIQUITIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_TAXID: 28450; SOURCE 4 GENE: BPSS1512; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: UBC; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEUBIQUITINASE, ESTERASE, ISOPEPTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SZCZESNA,J.N.PRUNEDA,T.L.M.THURSTON REVDAT 1 05-JUN-24 8SSI 0 JRNL AUTH M.SZCZESNA,Y.HUANG,R.E.LACOURSIERE,F.BONINI,V.POL,F.KOC, JRNL AUTH 2 B.WARD,P.P.GEURINK,J.N.PRUNEDA,T.L.M.THURSTON JRNL TITL BURKHOLDERIA ESTERASE TSSM COUNTERS RNF213-MEDIATED JRNL TITL 2 BACTERIAL UBIQUITYLATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 37915 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.7600 - 5.8800 1.00 3017 147 0.2029 0.2126 REMARK 3 2 5.8800 - 4.6700 1.00 2832 164 0.1919 0.2211 REMARK 3 3 4.6600 - 4.0800 1.00 2805 138 0.1813 0.2009 REMARK 3 4 4.0800 - 3.7000 1.00 2776 156 0.2130 0.2510 REMARK 3 5 3.7000 - 3.4400 1.00 2747 151 0.2432 0.2933 REMARK 3 6 3.4400 - 3.2300 1.00 2756 151 0.2555 0.2656 REMARK 3 7 3.2300 - 3.0700 1.00 2763 119 0.2767 0.3138 REMARK 3 8 3.0700 - 2.9400 1.00 2736 151 0.2887 0.3307 REMARK 3 9 2.9400 - 2.8300 1.00 2735 129 0.3026 0.3426 REMARK 3 10 2.8300 - 2.7300 1.00 2750 141 0.2941 0.3670 REMARK 3 11 2.7300 - 2.6400 1.00 2716 135 0.3267 0.3487 REMARK 3 12 2.6400 - 2.5700 1.00 2697 141 0.3096 0.3505 REMARK 3 13 2.5700 - 2.5000 1.00 2717 145 0.3176 0.3540 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.561 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5389 REMARK 3 ANGLE : 0.590 7362 REMARK 3 CHIRALITY : 0.043 860 REMARK 3 PLANARITY : 0.005 976 REMARK 3 DIHEDRAL : 5.404 755 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN D AND ( RESID 1:75 OR RESID 101:101 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.789 83.137 52.510 REMARK 3 T TENSOR REMARK 3 T11: 0.6829 T22: 0.4630 REMARK 3 T33: 0.4784 T12: 0.0797 REMARK 3 T13: 0.0289 T23: -0.0351 REMARK 3 L TENSOR REMARK 3 L11: 1.8695 L22: 4.6396 REMARK 3 L33: 3.2524 L12: 0.2366 REMARK 3 L13: -0.4232 L23: 1.4883 REMARK 3 S TENSOR REMARK 3 S11: -0.2845 S12: -0.3564 S13: -0.1112 REMARK 3 S21: 0.7901 S22: 0.2904 S23: 0.0121 REMARK 3 S31: 0.8294 S32: 0.3106 S33: -0.0128 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 207:290 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.486 41.398 22.086 REMARK 3 T TENSOR REMARK 3 T11: 0.5601 T22: 0.6015 REMARK 3 T33: 0.6010 T12: 0.0530 REMARK 3 T13: -0.0620 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 1.3465 L22: 1.1187 REMARK 3 L33: 3.0277 L12: -0.3521 REMARK 3 L13: 0.0501 L23: 0.4562 REMARK 3 S TENSOR REMARK 3 S11: -0.0453 S12: -0.2221 S13: 0.0860 REMARK 3 S21: 0.1702 S22: 0.0970 S23: 0.2903 REMARK 3 S31: 0.2431 S32: 0.0504 S33: -0.0668 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 291:474 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.319 55.470 -0.693 REMARK 3 T TENSOR REMARK 3 T11: 0.4669 T22: 0.4390 REMARK 3 T33: 0.4758 T12: -0.0794 REMARK 3 T13: -0.0167 T23: 0.0713 REMARK 3 L TENSOR REMARK 3 L11: 2.9751 L22: 2.2362 REMARK 3 L33: 3.3466 L12: -0.0904 REMARK 3 L13: 0.9321 L23: -0.3778 REMARK 3 S TENSOR REMARK 3 S11: -0.2099 S12: 0.2138 S13: 0.2193 REMARK 3 S21: 0.0636 S22: 0.0726 S23: -0.0297 REMARK 3 S31: -0.4044 S32: 0.3816 S33: 0.1310 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND ( RESID 1:75 OR RESID 101:101 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.912 61.445 -22.191 REMARK 3 T TENSOR REMARK 3 T11: 0.8275 T22: 0.6118 REMARK 3 T33: 0.6386 T12: -0.0665 REMARK 3 T13: -0.1614 T23: 0.1996 REMARK 3 L TENSOR REMARK 3 L11: 3.7260 L22: 4.3711 REMARK 3 L33: 4.2190 L12: 0.3437 REMARK 3 L13: 0.7420 L23: 0.8659 REMARK 3 S TENSOR REMARK 3 S11: -0.1246 S12: 0.7286 S13: 0.0564 REMARK 3 S21: -1.2102 S22: 0.0844 S23: 0.6154 REMARK 3 S31: -0.6486 S32: -0.2243 S33: 0.0137 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN C AND RESID 207:290 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.696 74.016 11.072 REMARK 3 T TENSOR REMARK 3 T11: 0.6427 T22: 0.6541 REMARK 3 T33: 0.6766 T12: 0.0381 REMARK 3 T13: 0.1112 T23: -0.1291 REMARK 3 L TENSOR REMARK 3 L11: 1.9036 L22: 0.8849 REMARK 3 L33: 2.9605 L12: -0.1541 REMARK 3 L13: 0.2563 L23: 0.3583 REMARK 3 S TENSOR REMARK 3 S11: 0.1488 S12: 0.3341 S13: 0.3564 REMARK 3 S21: 0.3279 S22: 0.3382 S23: 0.2550 REMARK 3 S31: -0.1535 S32: 0.5935 S33: -0.4682 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN C AND RESID 291:474 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.893 70.688 31.653 REMARK 3 T TENSOR REMARK 3 T11: 0.5831 T22: 0.3446 REMARK 3 T33: 0.4463 T12: 0.0075 REMARK 3 T13: -0.0154 T23: -0.0413 REMARK 3 L TENSOR REMARK 3 L11: 2.4837 L22: 3.6880 REMARK 3 L33: 2.6205 L12: -0.9301 REMARK 3 L13: -1.3474 L23: 0.8161 REMARK 3 S TENSOR REMARK 3 S11: -0.2210 S12: -0.1618 S13: -0.0718 REMARK 3 S21: 0.3648 S22: 0.2037 S23: -0.1586 REMARK 3 S31: 0.5864 S32: 0.2149 S33: 0.0060 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SSI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1000274383. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999903 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 3.10 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38023 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 58.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.39300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M SODIUM PHOSPHATE MONOBASIC REMARK 280 MONOHYDRATE/POTASSIUM PHOSPHATE DIBASIC PH 5.6, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.90050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.25850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.25850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.45025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.25850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.25850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 145.35075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.25850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.25850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 48.45025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.25850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.25850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 145.35075 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 96.90050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 187 REMARK 465 ALA A 188 REMARK 465 MET A 189 REMARK 465 SER A 190 REMARK 465 GLY A 262 REMARK 465 GLY C 187 REMARK 465 ALA C 188 REMARK 465 MET C 189 REMARK 465 SER C 190 REMARK 465 PRO C 206 REMARK 465 ALA C 255 REMARK 465 GLY C 256 REMARK 465 ILE C 257 REMARK 465 ARG C 258 REMARK 465 SER C 259 REMARK 465 THR C 260 REMARK 465 THR C 261 REMARK 465 GLY C 262 REMARK 465 GLU C 263 REMARK 465 ARG C 264 REMARK 465 SER C 265 REMARK 465 ALA C 266 REMARK 465 HIS C 267 REMARK 465 PRO C 268 REMARK 465 LEU C 269 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 193 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 201 CG OD1 OD2 REMARK 470 ARG A 202 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 233 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 ARG A 258 CG CD NE CZ NH1 NH2 REMARK 470 SER A 259 OG REMARK 470 THR A 260 OG1 CG2 REMARK 470 THR A 261 OG1 CG2 REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 470 ARG A 264 CG CD NE CZ NH1 NH2 REMARK 470 SER A 265 OG REMARK 470 HIS A 267 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 333 CG OD1 OD2 REMARK 470 ASP A 414 CG OD1 OD2 REMARK 470 ARG A 415 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 6 CD CE NZ REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 ARG C 192 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 202 CG CD NE CZ NH1 NH2 REMARK 470 ILE C 204 CG1 CG2 CD1 REMARK 470 GLU C 205 CG CD OE1 OE2 REMARK 470 ARG C 233 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 241 CG CD CE NZ REMARK 470 THR C 270 OG1 CG2 REMARK 470 ASP C 308 CG OD1 OD2 REMARK 470 GLU C 325 CG CD OE1 OE2 REMARK 470 ASP C 414 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 352 O HOH A 601 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 211 93.62 -68.54 REMARK 500 ALA A 290 54.70 -140.88 REMARK 500 SER A 401 -157.26 -108.76 REMARK 500 ASP A 442 -113.25 54.01 REMARK 500 GLU B 64 -26.07 76.54 REMARK 500 ARG C 193 74.61 -158.76 REMARK 500 ALA C 203 -166.38 -73.84 REMARK 500 ALA C 290 56.13 -145.40 REMARK 500 SER C 401 -149.68 -112.82 REMARK 500 ASP C 442 72.08 41.91 REMARK 500 ALA C 443 -9.73 87.72 REMARK 500 REMARK 500 REMARK: NULL DBREF 8SSI A 192 474 UNP Q63K53 Q63K53_BURPS 192 474 DBREF 8SSI B 1 75 UNP P0CG48 UBC_HUMAN 1 75 DBREF 8SSI C 192 474 UNP Q63K53 Q63K53_BURPS 192 474 DBREF 8SSI D 1 75 UNP P0CG48 UBC_HUMAN 1 75 SEQADV 8SSI GLY A 187 UNP Q63K53 EXPRESSION TAG SEQADV 8SSI ALA A 188 UNP Q63K53 EXPRESSION TAG SEQADV 8SSI MET A 189 UNP Q63K53 EXPRESSION TAG SEQADV 8SSI SER A 190 UNP Q63K53 EXPRESSION TAG SEQADV 8SSI MET A 191 UNP Q63K53 EXPRESSION TAG SEQADV 8SSI GLY C 187 UNP Q63K53 EXPRESSION TAG SEQADV 8SSI ALA C 188 UNP Q63K53 EXPRESSION TAG SEQADV 8SSI MET C 189 UNP Q63K53 EXPRESSION TAG SEQADV 8SSI SER C 190 UNP Q63K53 EXPRESSION TAG SEQADV 8SSI MET C 191 UNP Q63K53 EXPRESSION TAG SEQRES 1 A 288 GLY ALA MET SER MET ARG ARG PRO THR ILE GLU LEU GLU SEQRES 2 A 288 PHE ASP ARG ALA ILE GLU PRO GLY SER VAL PRO HIS ILE SEQRES 3 A 288 ALA LEU ARG ALA ASP ASP GLY THR SER VAL ALA VAL GLY SEQRES 4 A 288 PRO LEU SER TRP LEU SER ASP ARG ARG ILE ALA PHE ALA SEQRES 5 A 288 PRO ARG LYS PRO LEU LYS SER ASN SER ARG TYR GLU ILE SEQRES 6 A 288 MET VAL PRO ALA GLY ILE ARG SER THR THR GLY GLU ARG SEQRES 7 A 288 SER ALA HIS PRO LEU THR SER SER PHE ASP THR ALA PRO SEQRES 8 A 288 VAL THR PRO PRO ARG GLY LEU PRO ASN LEU ASP GLY ALA SEQRES 9 A 288 SER CYS PHE ILE ASN THR ALA LEU GLN LEU ALA VAL HIS SEQRES 10 A 288 SER SER ALA LEU ASP ASP ILE LEU SER ASN GLU ALA VAL SEQRES 11 A 288 PRO PRO ALA VAL ARG THR LEU LEU GLU ASP TYR ASP ALA SEQRES 12 A 288 ALA SER ALA ASP ALA LEU ASP ALA GLN LEU ALA ALA ALA SEQRES 13 A 288 VAL ALA ALA LEU ARG ALA THR PRO GLU VAL PRO ASP SER SEQRES 14 A 288 GLY PRO GLY GLN THR LEU GLU VAL MET GLN ALA LEU ARG SEQRES 15 A 288 MET PRO LEU TYR ASP THR SER SER ALA ASN ASN ALA THR SEQRES 16 A 288 ASN ASN ALA ASP ALA ILE ARG HIS ALA PRO PRO ASN THR SEQRES 17 A 288 LYS ALA PHE PHE LEU ASN SER TYR PRO PRO LEU SER TYR SEQRES 18 A 288 ALA ASP LEU PRO ASN HIS ASP ARG LEU VAL ALA PHE ASP SEQRES 19 A 288 TYR SER THR GLY GLY HIS TYR VAL ALA TYR VAL LYS ARG SEQRES 20 A 288 ASP GLY ILE TRP TYR ARG ILE ASP ASP ALA GLN VAL SER SEQRES 21 A 288 ALA VAL ASN GLU GLN ASP LEU LEU ALA LEU PRO ALA PHE SEQRES 22 A 288 ASN PRO ALA ASN GLY SER VAL SER ILE GLU ILE ALA ILE SEQRES 23 A 288 TYR ARG SEQRES 1 B 75 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 75 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 75 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 75 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 75 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 75 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY SEQRES 1 C 288 GLY ALA MET SER MET ARG ARG PRO THR ILE GLU LEU GLU SEQRES 2 C 288 PHE ASP ARG ALA ILE GLU PRO GLY SER VAL PRO HIS ILE SEQRES 3 C 288 ALA LEU ARG ALA ASP ASP GLY THR SER VAL ALA VAL GLY SEQRES 4 C 288 PRO LEU SER TRP LEU SER ASP ARG ARG ILE ALA PHE ALA SEQRES 5 C 288 PRO ARG LYS PRO LEU LYS SER ASN SER ARG TYR GLU ILE SEQRES 6 C 288 MET VAL PRO ALA GLY ILE ARG SER THR THR GLY GLU ARG SEQRES 7 C 288 SER ALA HIS PRO LEU THR SER SER PHE ASP THR ALA PRO SEQRES 8 C 288 VAL THR PRO PRO ARG GLY LEU PRO ASN LEU ASP GLY ALA SEQRES 9 C 288 SER CYS PHE ILE ASN THR ALA LEU GLN LEU ALA VAL HIS SEQRES 10 C 288 SER SER ALA LEU ASP ASP ILE LEU SER ASN GLU ALA VAL SEQRES 11 C 288 PRO PRO ALA VAL ARG THR LEU LEU GLU ASP TYR ASP ALA SEQRES 12 C 288 ALA SER ALA ASP ALA LEU ASP ALA GLN LEU ALA ALA ALA SEQRES 13 C 288 VAL ALA ALA LEU ARG ALA THR PRO GLU VAL PRO ASP SER SEQRES 14 C 288 GLY PRO GLY GLN THR LEU GLU VAL MET GLN ALA LEU ARG SEQRES 15 C 288 MET PRO LEU TYR ASP THR SER SER ALA ASN ASN ALA THR SEQRES 16 C 288 ASN ASN ALA ASP ALA ILE ARG HIS ALA PRO PRO ASN THR SEQRES 17 C 288 LYS ALA PHE PHE LEU ASN SER TYR PRO PRO LEU SER TYR SEQRES 18 C 288 ALA ASP LEU PRO ASN HIS ASP ARG LEU VAL ALA PHE ASP SEQRES 19 C 288 TYR SER THR GLY GLY HIS TYR VAL ALA TYR VAL LYS ARG SEQRES 20 C 288 ASP GLY ILE TRP TYR ARG ILE ASP ASP ALA GLN VAL SER SEQRES 21 C 288 ALA VAL ASN GLU GLN ASP LEU LEU ALA LEU PRO ALA PHE SEQRES 22 C 288 ASN PRO ALA ASN GLY SER VAL SER ILE GLU ILE ALA ILE SEQRES 23 C 288 TYR ARG SEQRES 1 D 75 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 D 75 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 D 75 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 D 75 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 D 75 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 D 75 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY HET GOL A 501 6 HET AYE B 101 4 HET AYE D 101 4 HETNAM GOL GLYCEROL HETNAM AYE PROP-2-EN-1-AMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN AYE ALLYLAMINE FORMUL 5 GOL C3 H8 O3 FORMUL 6 AYE 2(C3 H7 N) FORMUL 8 HOH *38(H2 O) HELIX 1 AA1 SER A 291 HIS A 303 1 13 HELIX 2 AA2 ALA A 306 SER A 312 1 7 HELIX 3 AA3 PRO A 317 ASP A 326 1 10 HELIX 4 AA4 SER A 331 ALA A 348 1 18 HELIX 5 AA5 GLN A 359 LEU A 367 1 9 HELIX 6 AA6 SER A 375 ALA A 377 5 3 HELIX 7 AA7 ASN A 382 HIS A 389 1 8 HELIX 8 AA8 ASN A 412 ASP A 414 5 3 HELIX 9 AA9 ASN A 449 LEU A 454 1 6 HELIX 10 AB1 THR B 22 GLY B 35 1 14 HELIX 11 AB2 PRO B 37 ASP B 39 5 3 HELIX 12 AB3 SER C 291 SER C 304 1 14 HELIX 13 AB4 ALA C 306 SER C 312 1 7 HELIX 14 AB5 PRO C 317 ASP C 326 1 10 HELIX 15 AB6 SER C 331 THR C 349 1 19 HELIX 16 AB7 GLN C 359 LEU C 367 1 9 HELIX 17 AB8 ASN C 382 HIS C 389 1 8 HELIX 18 AB9 ASN C 412 ASP C 414 5 3 HELIX 19 AC1 ASN C 449 LEU C 454 1 6 HELIX 20 AC2 THR D 22 GLY D 35 1 14 HELIX 21 AC3 PRO D 37 ASP D 39 5 3 HELIX 22 AC4 THR D 55 ASN D 60 5 6 SHEET 1 AA1 3 ILE A 196 GLU A 199 0 SHEET 2 AA1 3 ARG A 234 PHE A 237 -1 O PHE A 237 N ILE A 196 SHEET 3 AA1 3 SER A 228 SER A 231 -1 N SER A 228 O ALA A 236 SHEET 1 AA2 4 SER A 221 ALA A 223 0 SHEET 2 AA2 4 ALA A 213 ARG A 215 -1 N LEU A 214 O VAL A 222 SHEET 3 AA2 4 ARG A 248 VAL A 253 -1 O GLU A 250 N ARG A 215 SHEET 4 AA2 4 LEU A 269 ASP A 274 -1 O SER A 271 N ILE A 251 SHEET 1 AA3 7 TYR A 372 ASP A 373 0 SHEET 2 AA3 7 ALA A 396 PHE A 398 1 O PHE A 398 N TYR A 372 SHEET 3 AA3 7 ILE A 470 TYR A 473 -1 O ALA A 471 N PHE A 397 SHEET 4 AA3 7 LEU A 416 SER A 422 -1 N ALA A 418 O ILE A 472 SHEET 5 AA3 7 TYR A 427 ARG A 433 -1 O LYS A 432 N VAL A 417 SHEET 6 AA3 7 ILE A 436 ASP A 441 -1 O ILE A 440 N ALA A 429 SHEET 7 AA3 7 GLN A 444 VAL A 448 -1 O SER A 446 N ARG A 439 SHEET 1 AA4 5 LYS B 11 GLU B 16 0 SHEET 2 AA4 5 GLN B 2 THR B 7 -1 N VAL B 5 O ILE B 13 SHEET 3 AA4 5 THR B 66 LEU B 71 1 O LEU B 67 N PHE B 4 SHEET 4 AA4 5 GLN B 41 PHE B 45 -1 N ARG B 42 O VAL B 70 SHEET 5 AA4 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 SHEET 1 AA5 3 ILE C 196 GLU C 199 0 SHEET 2 AA5 3 ARG C 234 PHE C 237 -1 O PHE C 237 N ILE C 196 SHEET 3 AA5 3 SER C 228 TRP C 229 -1 N SER C 228 O ALA C 236 SHEET 1 AA6 4 SER C 221 ALA C 223 0 SHEET 2 AA6 4 ALA C 213 ARG C 215 -1 N LEU C 214 O VAL C 222 SHEET 3 AA6 4 ARG C 248 MET C 252 -1 O MET C 252 N ALA C 213 SHEET 4 AA6 4 SER C 271 ASP C 274 -1 O PHE C 273 N TYR C 249 SHEET 1 AA7 7 TYR C 372 ASP C 373 0 SHEET 2 AA7 7 ALA C 396 PHE C 398 1 O ALA C 396 N TYR C 372 SHEET 3 AA7 7 ILE C 470 TYR C 473 -1 O ALA C 471 N PHE C 397 SHEET 4 AA7 7 LEU C 416 SER C 422 -1 N ALA C 418 O ILE C 472 SHEET 5 AA7 7 TYR C 427 ARG C 433 -1 O VAL C 428 N TYR C 421 SHEET 6 AA7 7 ILE C 436 ASP C 441 -1 O ILE C 440 N ALA C 429 SHEET 7 AA7 7 GLN C 444 VAL C 448 -1 O SER C 446 N ARG C 439 SHEET 1 AA8 5 THR D 12 GLU D 16 0 SHEET 2 AA8 5 GLN D 2 THR D 7 -1 N VAL D 5 O ILE D 13 SHEET 3 AA8 5 THR D 66 LEU D 71 1 O LEU D 67 N PHE D 4 SHEET 4 AA8 5 GLN D 41 PHE D 45 -1 N ARG D 42 O VAL D 70 SHEET 5 AA8 5 LYS D 48 GLN D 49 -1 O LYS D 48 N PHE D 45 LINK SG CYS A 292 C2 AYE B 101 1555 1555 1.67 LINK C GLY B 75 N1 AYE B 101 1555 1555 1.35 LINK SG CYS C 292 C2 AYE D 101 1555 1555 1.66 LINK C GLY D 75 N1 AYE D 101 1555 1555 1.35 CISPEP 1 TYR A 402 PRO A 403 0 2.38 CISPEP 2 TYR C 402 PRO C 403 0 -4.05 CRYST1 104.517 104.517 193.801 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009568 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009568 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005160 0.00000