HEADER TRANSFERASE 08-MAY-23 8SSN TITLE ABL KINASE IN COMPLEX WITH SKI AND ASCIMINIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE ABL1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG 1,ABELSON COMPND 5 TYROSINE-PROTEIN KINASE 1,PROTO-ONCOGENE C-ABL,P150; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ABL1, ABL, JTK7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS COMPLEX, KINASE, DOUBLE DRUGGING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.LUDEWIG,C.KIM,D.KERN REVDAT 1 06-SEP-23 8SSN 0 JRNL AUTH C.KIM,H.LUDEWIG,A.HADZIPASIC,S.KUTTER,V.NGUYEN,D.KERN JRNL TITL A BIOPHYSICAL FRAMEWORK FOR DOUBLE-DRUGGING KINASES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 120 11120 2023 JRNL REFN ESSN 1091-6490 JRNL PMID 37590418 JRNL DOI 10.1073/PNAS.2304611120 REMARK 2 REMARK 2 RESOLUTION. 2.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 23968 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.300 REMARK 3 R VALUE (WORKING SET) : 0.298 REMARK 3 FREE R VALUE : 0.348 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1189 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8300 - 5.7300 0.98 3002 152 0.3259 0.3460 REMARK 3 2 5.7300 - 4.5500 0.99 2916 150 0.2761 0.3649 REMARK 3 3 4.5500 - 3.9700 0.99 2859 147 0.2441 0.2882 REMARK 3 4 3.9700 - 3.6100 1.00 2850 181 0.2617 0.3134 REMARK 3 5 3.6100 - 3.3500 1.00 2871 135 0.2944 0.3960 REMARK 3 6 3.3500 - 3.1500 1.00 2844 140 0.3376 0.3615 REMARK 3 7 3.1500 - 3.0000 1.00 2836 146 0.3606 0.4225 REMARK 3 8 2.9900 - 2.8600 0.92 2601 138 0.3968 0.4213 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.500 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 40.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6773 REMARK 3 ANGLE : 0.729 9170 REMARK 3 CHIRALITY : 0.045 971 REMARK 3 PLANARITY : 0.006 1151 REMARK 3 DIHEDRAL : 5.753 906 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.4565 1.5348 11.2098 REMARK 3 T TENSOR REMARK 3 T11: 1.0403 T22: 0.0804 REMARK 3 T33: 0.4193 T12: -0.1280 REMARK 3 T13: 0.0199 T23: -0.0412 REMARK 3 L TENSOR REMARK 3 L11: 2.1159 L22: 1.6539 REMARK 3 L33: 0.1228 L12: 1.1619 REMARK 3 L13: -0.1119 L23: 0.2792 REMARK 3 S TENSOR REMARK 3 S11: -0.2837 S12: 0.4825 S13: 0.5035 REMARK 3 S21: -0.5414 S22: 0.3539 S23: -0.3685 REMARK 3 S31: -0.2817 S32: -0.1843 S33: -0.0968 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.1525 -1.3975 24.8009 REMARK 3 T TENSOR REMARK 3 T11: 0.8392 T22: 0.2009 REMARK 3 T33: 0.3498 T12: -0.0919 REMARK 3 T13: 0.0379 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 1.5846 L22: 0.8808 REMARK 3 L33: 1.4072 L12: -0.4744 REMARK 3 L13: -0.8736 L23: 0.8866 REMARK 3 S TENSOR REMARK 3 S11: -0.0509 S12: -0.4512 S13: 0.3115 REMARK 3 S21: 0.0082 S22: 0.0210 S23: 0.3679 REMARK 3 S31: -0.0414 S32: -0.0435 S33: 0.0192 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 312 THROUGH 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.6099 -10.3300 21.5287 REMARK 3 T TENSOR REMARK 3 T11: 0.6718 T22: 0.2189 REMARK 3 T33: 0.4530 T12: 0.0275 REMARK 3 T13: -0.0143 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 3.2169 L22: 0.0370 REMARK 3 L33: 3.5422 L12: -0.0956 REMARK 3 L13: -0.4542 L23: 0.3990 REMARK 3 S TENSOR REMARK 3 S11: 0.2925 S12: -0.3171 S13: -0.3484 REMARK 3 S21: -0.1399 S22: -0.2215 S23: -0.6515 REMARK 3 S31: 0.0853 S32: 0.1330 S33: -0.0955 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 404 THROUGH 526 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9056 -16.6259 37.6978 REMARK 3 T TENSOR REMARK 3 T11: 0.5793 T22: 0.6436 REMARK 3 T33: 0.3333 T12: -0.0584 REMARK 3 T13: -0.0843 T23: 0.3758 REMARK 3 L TENSOR REMARK 3 L11: 0.7986 L22: 2.1202 REMARK 3 L33: 1.9135 L12: 0.2958 REMARK 3 L13: 0.0567 L23: -1.2418 REMARK 3 S TENSOR REMARK 3 S11: -0.0043 S12: -0.6347 S13: -0.2389 REMARK 3 S21: 0.4015 S22: -0.0141 S23: -0.2450 REMARK 3 S31: -0.2668 S32: -0.1407 S33: 0.1365 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 82 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.1396 -22.4228 16.0287 REMARK 3 T TENSOR REMARK 3 T11: 0.9802 T22: 0.3590 REMARK 3 T33: 0.8483 T12: -0.0426 REMARK 3 T13: 0.0865 T23: -0.0725 REMARK 3 L TENSOR REMARK 3 L11: 0.5849 L22: 1.8550 REMARK 3 L33: 2.2066 L12: 0.5409 REMARK 3 L13: 0.2250 L23: -0.9453 REMARK 3 S TENSOR REMARK 3 S11: -0.0999 S12: -0.0736 S13: -0.2652 REMARK 3 S21: 0.0062 S22: -0.0695 S23: 0.3372 REMARK 3 S31: -0.5099 S32: 0.2126 S33: 0.0449 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 173 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.8210 -27.5017 36.5235 REMARK 3 T TENSOR REMARK 3 T11: 0.7771 T22: 0.4997 REMARK 3 T33: 0.8118 T12: -0.0581 REMARK 3 T13: 0.0083 T23: 0.1003 REMARK 3 L TENSOR REMARK 3 L11: 4.1772 L22: 4.4116 REMARK 3 L33: 5.9315 L12: 1.2292 REMARK 3 L13: 0.4457 L23: -0.6416 REMARK 3 S TENSOR REMARK 3 S11: -0.1726 S12: -0.5044 S13: 0.3675 REMARK 3 S21: 0.5169 S22: -0.3802 S23: -0.0178 REMARK 3 S31: -0.1033 S32: 0.3321 S33: 0.4756 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 242 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0903 -10.7837 16.9770 REMARK 3 T TENSOR REMARK 3 T11: 0.8023 T22: 0.4378 REMARK 3 T33: 0.6066 T12: 0.2245 REMARK 3 T13: 0.0642 T23: -0.0933 REMARK 3 L TENSOR REMARK 3 L11: 3.1704 L22: 2.1890 REMARK 3 L33: 4.0100 L12: 1.0401 REMARK 3 L13: 0.3119 L23: 0.7223 REMARK 3 S TENSOR REMARK 3 S11: 0.2119 S12: 0.4646 S13: -0.1420 REMARK 3 S21: -0.3574 S22: -0.0931 S23: -0.0121 REMARK 3 S31: -0.3371 S32: -0.4846 S33: -0.1133 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 376 THROUGH 525 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8351 -4.4627 35.7207 REMARK 3 T TENSOR REMARK 3 T11: 0.7513 T22: 0.7595 REMARK 3 T33: 1.0044 T12: -0.1722 REMARK 3 T13: 0.0735 T23: -0.3614 REMARK 3 L TENSOR REMARK 3 L11: 2.6840 L22: 5.6898 REMARK 3 L33: 2.7553 L12: -1.4239 REMARK 3 L13: 0.4496 L23: 1.4709 REMARK 3 S TENSOR REMARK 3 S11: 0.1387 S12: -0.7140 S13: 0.8460 REMARK 3 S21: 0.0757 S22: -0.3035 S23: 0.0842 REMARK 3 S31: 0.0032 S32: 0.0350 S33: 0.0782 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SSN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000274392. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 2.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.04054 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24343 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.860 REMARK 200 RESOLUTION RANGE LOW (A) : 47.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.08614 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.36700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS OF ABLFL IN COMPLEX WITH SKI REMARK 280 AND ASCIMINIB WERE OBTAINED BY COMBINING 0.3 UL OF 600 UM ABLFL + REMARK 280 700 UM SKI + 700 UM ASCIMINIB (~32 MG/ML) IN 5 PERCENT DMSO REMARK 280 WITH 0.4 UL RESERVOIR OF 0.1 M TRIS-HCL PH 8 + 1.75 M AMMONIUM REMARK 280 SULFATE + 2 PERCENT (V/V) POLYPROPYLENE GLYCOL 400 (PPG 400). REMARK 280 THE FINAL STOCK OF COMPLEX WAS CONCENTRATED FROM 1 UM ABLFL WITH REMARK 280 ~1.2 UM SKI/ASCIMINIB AFTER INCUBATION AT 4 DEGREE C FOR 6 H. REMARK 280 SCREENING AROUND THIS CONDITION YIELDED CRYSTALS IN A REMARK 280 TRANSPARENT DIAMOND-SHAPED OR PLATE-SHAPED CRYSTALS. CRYSTALS REMARK 280 WERE GROWN AT 18 DEGREE C BY SITTING DROP FOR A FEW DAYS. THE REMARK 280 CRYSTALS WERE TRANSFERRED TO A DROP OF FRESH RESERVOIR REMARK 280 CONTAINING 20 PERCENT XYLITOL WITH MATCHING CONCENTRATION OF REMARK 280 INHIBITORS IN 5 PERCENT DMSO FOR FEW SECONDS FOR CRYO-PROTECTION, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 46.23900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.98150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.60650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.98150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.23900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.60650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 251 REMARK 465 ASP A 252 REMARK 465 LYS A 253 REMARK 465 TRP A 254 REMARK 465 GLU A 255 REMARK 465 MET A 256 REMARK 465 GLU A 257 REMARK 465 ARG A 258 REMARK 465 THR A 259 REMARK 465 GLN A 271 REMARK 465 TYR A 272 REMARK 465 GLY A 273 REMARK 465 ASP A 410 REMARK 465 THR A 411 REMARK 465 TYR A 412 REMARK 465 THR A 413 REMARK 465 ALA A 414 REMARK 465 HIS A 415 REMARK 465 ALA A 416 REMARK 465 GLY A 417 REMARK 465 ALA A 418 REMARK 465 LYS A 419 REMARK 465 PHE A 420 REMARK 465 GLY A 461 REMARK 465 TYR A 475 REMARK 465 LYS A 527 REMARK 465 GLU A 528 REMARK 465 LEU A 529 REMARK 465 TYR B 251 REMARK 465 ASP B 252 REMARK 465 LYS B 253 REMARK 465 TRP B 254 REMARK 465 GLU B 255 REMARK 465 MET B 256 REMARK 465 GLU B 257 REMARK 465 THR B 262 REMARK 465 LYS B 266 REMARK 465 LEU B 267 REMARK 465 GLY B 268 REMARK 465 GLY B 269 REMARK 465 GLY B 270 REMARK 465 GLN B 271 REMARK 465 TYR B 272 REMARK 465 GLY B 273 REMARK 465 GLU B 274 REMARK 465 VAL B 275 REMARK 465 TYR B 276 REMARK 465 THR B 291 REMARK 465 LEU B 292 REMARK 465 LYS B 293 REMARK 465 GLU B 294 REMARK 465 ASP B 295 REMARK 465 THR B 296 REMARK 465 MET B 297 REMARK 465 GLU B 298 REMARK 465 VAL B 299 REMARK 465 ILE B 312 REMARK 465 CYS B 324 REMARK 465 THR B 325 REMARK 465 ARG B 326 REMARK 465 GLU B 327 REMARK 465 PRO B 328 REMARK 465 PRO B 329 REMARK 465 PHE B 330 REMARK 465 TYR B 331 REMARK 465 LEU B 403 REMARK 465 SER B 404 REMARK 465 ARG B 405 REMARK 465 LEU B 406 REMARK 465 MET B 407 REMARK 465 THR B 408 REMARK 465 GLY B 409 REMARK 465 ASP B 410 REMARK 465 THR B 411 REMARK 465 TYR B 412 REMARK 465 THR B 413 REMARK 465 ALA B 414 REMARK 465 HIS B 415 REMARK 465 ALA B 416 REMARK 465 GLY B 417 REMARK 465 ALA B 418 REMARK 465 LYS B 419 REMARK 465 PHE B 420 REMARK 465 GLY B 461 REMARK 465 TYR B 475 REMARK 465 ARG B 476 REMARK 465 GLU B 526 REMARK 465 LYS B 527 REMARK 465 GLU B 528 REMARK 465 LEU B 529 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 83 -9.86 69.81 REMARK 500 ALA A 93 -76.59 -64.05 REMARK 500 SER A 94 28.77 46.05 REMARK 500 LYS A 266 -86.43 -85.36 REMARK 500 LEU A 267 -30.53 -147.57 REMARK 500 LYS A 293 -77.82 -103.47 REMARK 500 GLU A 294 -158.22 -173.03 REMARK 500 ASP A 295 -75.48 78.38 REMARK 500 ASN A 377 36.30 70.10 REMARK 500 ARG A 381 -3.37 85.55 REMARK 500 ASP A 382 38.35 -153.51 REMARK 500 ALA A 384 -172.06 -178.18 REMARK 500 SER A 404 -52.30 57.09 REMARK 500 ARG A 405 -154.35 -115.87 REMARK 500 LEU A 406 166.64 75.38 REMARK 500 MET A 407 -103.37 52.40 REMARK 500 ARG B 381 -10.38 68.17 REMARK 500 TYR B 459 69.38 60.72 REMARK 500 THR B 514 60.36 -106.04 REMARK 500 MET B 515 -35.31 -132.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 723 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH B 728 DISTANCE = 6.50 ANGSTROMS DBREF 8SSN A 83 529 UNP P00519 ABL1_HUMAN 64 510 DBREF 8SSN B 83 529 UNP P00519 ABL1_HUMAN 64 510 SEQADV 8SSN GLY A 82 UNP P00519 EXPRESSION TAG SEQADV 8SSN GLY B 82 UNP P00519 EXPRESSION TAG SEQRES 1 A 448 GLY ASN LEU PHE VAL ALA LEU TYR ASP PHE VAL ALA SER SEQRES 2 A 448 GLY ASP ASN THR LEU SER ILE THR LYS GLY GLU LYS LEU SEQRES 3 A 448 ARG VAL LEU GLY TYR ASN HIS ASN GLY GLU TRP CYS GLU SEQRES 4 A 448 ALA GLN THR LYS ASN GLY GLN GLY TRP VAL PRO SER ASN SEQRES 5 A 448 TYR ILE THR PRO VAL ASN SER LEU GLU LYS HIS SER TRP SEQRES 6 A 448 TYR HIS GLY PRO VAL SER ARG ASN ALA ALA GLU TYR LEU SEQRES 7 A 448 LEU SER SER GLY ILE ASN GLY SER PHE LEU VAL ARG GLU SEQRES 8 A 448 SER GLU SER SER PRO GLY GLN ARG SER ILE SER LEU ARG SEQRES 9 A 448 TYR GLU GLY ARG VAL TYR HIS TYR ARG ILE ASN THR ALA SEQRES 10 A 448 SER ASP GLY LYS LEU TYR VAL SER SER GLU SER ARG PHE SEQRES 11 A 448 ASN THR LEU ALA GLU LEU VAL HIS HIS HIS SER THR VAL SEQRES 12 A 448 ALA ASP GLY LEU ILE THR THR LEU HIS TYR PRO ALA PRO SEQRES 13 A 448 LYS ARG ASN LYS PRO THR VAL TYR GLY VAL SER PRO ASN SEQRES 14 A 448 TYR ASP LYS TRP GLU MET GLU ARG THR ASP ILE THR MET SEQRES 15 A 448 LYS HIS LYS LEU GLY GLY GLY GLN TYR GLY GLU VAL TYR SEQRES 16 A 448 GLU GLY VAL TRP LYS LYS TYR SER LEU THR VAL ALA VAL SEQRES 17 A 448 LYS THR LEU LYS GLU ASP THR MET GLU VAL GLU GLU PHE SEQRES 18 A 448 LEU LYS GLU ALA ALA VAL MET LYS GLU ILE LYS HIS PRO SEQRES 19 A 448 ASN LEU VAL GLN LEU LEU GLY VAL CYS THR ARG GLU PRO SEQRES 20 A 448 PRO PHE TYR ILE ILE THR GLU PHE MET THR TYR GLY ASN SEQRES 21 A 448 LEU LEU ASP TYR LEU ARG GLU CYS ASN ARG GLN GLU VAL SEQRES 22 A 448 ASN ALA VAL VAL LEU LEU TYR MET ALA THR GLN ILE SER SEQRES 23 A 448 SER ALA MET GLU TYR LEU GLU LYS LYS ASN PHE ILE HIS SEQRES 24 A 448 ARG ASP LEU ALA ALA ARG ASN CYS LEU VAL GLY GLU ASN SEQRES 25 A 448 HIS LEU VAL LYS VAL ALA ASP PHE GLY LEU SER ARG LEU SEQRES 26 A 448 MET THR GLY ASP THR TYR THR ALA HIS ALA GLY ALA LYS SEQRES 27 A 448 PHE PRO ILE LYS TRP THR ALA PRO GLU SER LEU ALA TYR SEQRES 28 A 448 ASN LYS PHE SER ILE LYS SER ASP VAL TRP ALA PHE GLY SEQRES 29 A 448 VAL LEU LEU TRP GLU ILE ALA THR TYR GLY MET SER PRO SEQRES 30 A 448 TYR PRO GLY ILE ASP LEU SER GLN VAL TYR GLU LEU LEU SEQRES 31 A 448 GLU LYS ASP TYR ARG MET GLU ARG PRO GLU GLY CYS PRO SEQRES 32 A 448 GLU LYS VAL TYR GLU LEU MET ARG ALA CYS TRP GLN TRP SEQRES 33 A 448 ASN PRO SER ASP ARG PRO SER PHE ALA GLU ILE HIS GLN SEQRES 34 A 448 ALA PHE GLU THR MET PHE GLN GLU SER SER ILE SER ASP SEQRES 35 A 448 GLU VAL GLU LYS GLU LEU SEQRES 1 B 448 GLY ASN LEU PHE VAL ALA LEU TYR ASP PHE VAL ALA SER SEQRES 2 B 448 GLY ASP ASN THR LEU SER ILE THR LYS GLY GLU LYS LEU SEQRES 3 B 448 ARG VAL LEU GLY TYR ASN HIS ASN GLY GLU TRP CYS GLU SEQRES 4 B 448 ALA GLN THR LYS ASN GLY GLN GLY TRP VAL PRO SER ASN SEQRES 5 B 448 TYR ILE THR PRO VAL ASN SER LEU GLU LYS HIS SER TRP SEQRES 6 B 448 TYR HIS GLY PRO VAL SER ARG ASN ALA ALA GLU TYR LEU SEQRES 7 B 448 LEU SER SER GLY ILE ASN GLY SER PHE LEU VAL ARG GLU SEQRES 8 B 448 SER GLU SER SER PRO GLY GLN ARG SER ILE SER LEU ARG SEQRES 9 B 448 TYR GLU GLY ARG VAL TYR HIS TYR ARG ILE ASN THR ALA SEQRES 10 B 448 SER ASP GLY LYS LEU TYR VAL SER SER GLU SER ARG PHE SEQRES 11 B 448 ASN THR LEU ALA GLU LEU VAL HIS HIS HIS SER THR VAL SEQRES 12 B 448 ALA ASP GLY LEU ILE THR THR LEU HIS TYR PRO ALA PRO SEQRES 13 B 448 LYS ARG ASN LYS PRO THR VAL TYR GLY VAL SER PRO ASN SEQRES 14 B 448 TYR ASP LYS TRP GLU MET GLU ARG THR ASP ILE THR MET SEQRES 15 B 448 LYS HIS LYS LEU GLY GLY GLY GLN TYR GLY GLU VAL TYR SEQRES 16 B 448 GLU GLY VAL TRP LYS LYS TYR SER LEU THR VAL ALA VAL SEQRES 17 B 448 LYS THR LEU LYS GLU ASP THR MET GLU VAL GLU GLU PHE SEQRES 18 B 448 LEU LYS GLU ALA ALA VAL MET LYS GLU ILE LYS HIS PRO SEQRES 19 B 448 ASN LEU VAL GLN LEU LEU GLY VAL CYS THR ARG GLU PRO SEQRES 20 B 448 PRO PHE TYR ILE ILE THR GLU PHE MET THR TYR GLY ASN SEQRES 21 B 448 LEU LEU ASP TYR LEU ARG GLU CYS ASN ARG GLN GLU VAL SEQRES 22 B 448 ASN ALA VAL VAL LEU LEU TYR MET ALA THR GLN ILE SER SEQRES 23 B 448 SER ALA MET GLU TYR LEU GLU LYS LYS ASN PHE ILE HIS SEQRES 24 B 448 ARG ASP LEU ALA ALA ARG ASN CYS LEU VAL GLY GLU ASN SEQRES 25 B 448 HIS LEU VAL LYS VAL ALA ASP PHE GLY LEU SER ARG LEU SEQRES 26 B 448 MET THR GLY ASP THR TYR THR ALA HIS ALA GLY ALA LYS SEQRES 27 B 448 PHE PRO ILE LYS TRP THR ALA PRO GLU SER LEU ALA TYR SEQRES 28 B 448 ASN LYS PHE SER ILE LYS SER ASP VAL TRP ALA PHE GLY SEQRES 29 B 448 VAL LEU LEU TRP GLU ILE ALA THR TYR GLY MET SER PRO SEQRES 30 B 448 TYR PRO GLY ILE ASP LEU SER GLN VAL TYR GLU LEU LEU SEQRES 31 B 448 GLU LYS ASP TYR ARG MET GLU ARG PRO GLU GLY CYS PRO SEQRES 32 B 448 GLU LYS VAL TYR GLU LEU MET ARG ALA CYS TRP GLN TRP SEQRES 33 B 448 ASN PRO SER ASP ARG PRO SER PHE ALA GLU ILE HIS GLN SEQRES 34 B 448 ALA PHE GLU THR MET PHE GLN GLU SER SER ILE SER ASP SEQRES 35 B 448 GLU VAL GLU LYS GLU LEU HET AY7 A 601 31 HET SKI A 602 28 HET CL A 603 1 HET SO4 A 604 5 HET SO4 A 605 5 HET DMS A 606 4 HET DMS A 607 4 HET DMS A 608 4 HET AY7 B 601 31 HET SKI B 602 28 HET SO4 B 603 5 HET DMS B 604 4 HETNAM AY7 ASCIMINIB HETNAM SKI 6,7-DIMETHOXY-N-(4-PHENOXYPHENYL)QUINAZOLIN-4-AMINE HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM DMS DIMETHYL SULFOXIDE FORMUL 3 AY7 2(C20 H18 CL F2 N5 O3) FORMUL 4 SKI 2(C22 H19 N3 O3) FORMUL 5 CL CL 1- FORMUL 6 SO4 3(O4 S 2-) FORMUL 8 DMS 4(C2 H6 O S) FORMUL 15 HOH *51(H2 O) HELIX 1 AA1 SER A 140 HIS A 144 5 5 HELIX 2 AA2 SER A 152 LEU A 160 1 9 HELIX 3 AA3 SER A 161 GLY A 163 5 3 HELIX 4 AA4 THR A 213 VAL A 224 1 12 HELIX 5 AA5 GLU A 300 GLU A 311 1 12 HELIX 6 AA6 LEU A 342 CYS A 349 1 8 HELIX 7 AA7 ASN A 355 LYS A 376 1 22 HELIX 8 AA8 GLU A 392 HIS A 394 5 3 HELIX 9 AA9 ALA A 426 TYR A 432 1 7 HELIX 10 AB1 SER A 436 THR A 453 1 18 HELIX 11 AB2 ASP A 463 SER A 465 5 3 HELIX 12 AB3 GLN A 466 LYS A 473 1 8 HELIX 13 AB4 PRO A 484 TRP A 495 1 12 HELIX 14 AB5 ASN A 498 ARG A 502 5 5 HELIX 15 AB6 SER A 504 MET A 515 1 12 HELIX 16 AB7 SER A 522 GLU A 526 5 5 HELIX 17 AB8 SER B 152 SER B 162 1 11 HELIX 18 AB9 THR B 213 SER B 222 1 10 HELIX 19 AC1 GLU B 301 GLU B 311 1 11 HELIX 20 AC2 LEU B 342 CYS B 349 1 8 HELIX 21 AC3 ASN B 355 LYS B 376 1 22 HELIX 22 AC4 GLU B 392 HIS B 394 5 3 HELIX 23 AC5 ALA B 426 TYR B 432 1 7 HELIX 24 AC6 SER B 436 THR B 453 1 18 HELIX 25 AC7 GLN B 466 ASP B 474 1 9 HELIX 26 AC8 PRO B 484 CYS B 494 1 11 HELIX 27 AC9 ASN B 498 ARG B 502 5 5 HELIX 28 AD1 SER B 504 THR B 514 1 11 HELIX 29 AD2 SER B 520 VAL B 525 1 6 SHEET 1 AA1 5 GLN A 127 PRO A 131 0 SHEET 2 AA1 5 TRP A 118 GLN A 122 -1 N ALA A 121 O GLY A 128 SHEET 3 AA1 5 LYS A 106 TYR A 112 -1 N LEU A 110 O GLU A 120 SHEET 4 AA1 5 PHE A 85 ALA A 87 -1 N PHE A 85 O LEU A 107 SHEET 5 AA1 5 ILE A 135 PRO A 137 -1 O THR A 136 N VAL A 86 SHEET 1 AA2 6 TYR A 147 PRO A 150 0 SHEET 2 AA2 6 SER A 167 GLU A 172 1 O VAL A 170 N HIS A 148 SHEET 3 AA2 6 ARG A 180 TYR A 186 -1 O ARG A 185 N SER A 167 SHEET 4 AA2 6 ARG A 189 THR A 197 -1 O TYR A 191 N LEU A 184 SHEET 5 AA2 6 LEU A 203 TYR A 204 -1 O TYR A 204 N ASN A 196 SHEET 6 AA2 6 ARG A 210 PHE A 211 -1 O PHE A 211 N LEU A 203 SHEET 1 AA3 3 TYR A 147 PRO A 150 0 SHEET 2 AA3 3 SER A 167 GLU A 172 1 O VAL A 170 N HIS A 148 SHEET 3 AA3 3 TYR A 234 PRO A 235 1 O TYR A 234 N PHE A 168 SHEET 1 AA4 4 VAL A 275 TRP A 280 0 SHEET 2 AA4 4 LEU A 285 LYS A 290 -1 O VAL A 289 N TYR A 276 SHEET 3 AA4 4 TYR A 331 GLU A 335 -1 O THR A 334 N ALA A 288 SHEET 4 AA4 4 LEU A 320 CYS A 324 -1 N GLY A 322 O ILE A 333 SHEET 1 AA5 3 GLY A 340 ASN A 341 0 SHEET 2 AA5 3 CYS A 388 VAL A 390 -1 O VAL A 390 N GLY A 340 SHEET 3 AA5 3 VAL A 396 VAL A 398 -1 O LYS A 397 N LEU A 389 SHEET 1 AA6 5 GLY B 126 PRO B 131 0 SHEET 2 AA6 5 TRP B 118 THR B 123 -1 N ALA B 121 O GLY B 128 SHEET 3 AA6 5 LYS B 106 TYR B 112 -1 N LEU B 110 O GLU B 120 SHEET 4 AA6 5 PHE B 85 ALA B 87 -1 N PHE B 85 O LEU B 107 SHEET 5 AA6 5 ILE B 135 PRO B 137 -1 O THR B 136 N VAL B 86 SHEET 1 AA7 5 TYR B 147 PRO B 150 0 SHEET 2 AA7 5 SER B 167 GLU B 172 1 O VAL B 170 N HIS B 148 SHEET 3 AA7 5 ARG B 180 TYR B 186 -1 O ARG B 185 N SER B 167 SHEET 4 AA7 5 ARG B 189 THR B 197 -1 O ARG B 189 N TYR B 186 SHEET 5 AA7 5 LEU B 203 TYR B 204 -1 O TYR B 204 N ASN B 196 SHEET 1 AA8 3 TYR B 147 PRO B 150 0 SHEET 2 AA8 3 SER B 167 GLU B 172 1 O VAL B 170 N HIS B 148 SHEET 3 AA8 3 TYR B 234 PRO B 235 1 O TYR B 234 N PHE B 168 SHEET 1 AA9 4 GLY B 278 TRP B 280 0 SHEET 2 AA9 4 LEU B 285 VAL B 289 -1 O VAL B 287 N GLY B 278 SHEET 3 AA9 4 ILE B 333 GLU B 335 -1 O THR B 334 N ALA B 288 SHEET 4 AA9 4 LEU B 320 GLY B 322 -1 N GLY B 322 O ILE B 333 SHEET 1 AB1 3 GLY B 340 ASN B 341 0 SHEET 2 AB1 3 CYS B 388 VAL B 390 -1 O VAL B 390 N GLY B 340 SHEET 3 AB1 3 VAL B 396 VAL B 398 -1 O LYS B 397 N LEU B 389 CRYST1 92.478 103.213 107.963 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010813 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009689 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009262 0.00000