HEADER BIOSYNTHETIC PROTEIN 09-MAY-23 8STB TITLE THE STRUCTURE OF ABXF, AN ENZYME CATALYZING THE FORMATION OF THE TITLE 2 CHIRAL SPIROKETAL OF AN ANTHRABENZOXOCINONE ANTIBIOTIC, (-)-ABX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYOXALASE; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP.; SOURCE 3 ORGANISM_TAXID: 1931; SOURCE 4 GENE: ABXF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DIELS-ALDERASE, BIOSYNTHESIS, ANTIBIOTICS, CHIRAL SPIROKETAL, KEYWDS 2 BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.LUO,X.JIA,X.YAN,X.QU,B.KOBE REVDAT 1 22-MAY-24 8STB 0 JRNL AUTH Z.LUO,X.JIA,X.YAN,X.QU,B.KOBE JRNL TITL THE CRYSTAL STRUCTURE OF ABXF, AN ENZYME CATALYZING THE JRNL TITL 2 FORMATION OF THE CHIRAL SPIROKETAL OF AN ANTHRABENZOXOCINONE JRNL TITL 3 ANTIBIOTIC, (-)-ABX. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.040 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 24495 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.720 REMARK 3 FREE R VALUE TEST SET COUNT : 2380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.1800 - 5.7100 1.00 1451 185 0.2356 0.2577 REMARK 3 2 5.7000 - 4.5300 1.00 1370 157 0.1771 0.1954 REMARK 3 3 4.5300 - 3.9600 1.00 1337 151 0.1639 0.1612 REMARK 3 4 3.9600 - 3.6000 1.00 1339 146 0.1870 0.2432 REMARK 3 5 3.6000 - 3.3400 1.00 1347 123 0.1976 0.2432 REMARK 3 6 3.3400 - 3.1400 0.99 1319 141 0.2120 0.2337 REMARK 3 7 3.1400 - 2.9800 0.99 1309 135 0.2477 0.3245 REMARK 3 8 2.9800 - 2.8500 0.99 1314 134 0.2270 0.2486 REMARK 3 9 2.8500 - 2.7400 0.98 1290 132 0.2011 0.2519 REMARK 3 10 2.7400 - 2.6500 0.99 1288 136 0.1963 0.2335 REMARK 3 11 2.6500 - 2.5700 0.98 1294 121 0.1977 0.2817 REMARK 3 12 2.5700 - 2.4900 0.98 1282 134 0.2234 0.3087 REMARK 3 13 2.4900 - 2.4300 0.97 1262 130 0.2296 0.3013 REMARK 3 14 2.4300 - 2.3700 0.96 1253 141 0.1961 0.2171 REMARK 3 15 2.3700 - 2.3100 0.96 1231 146 0.1918 0.2214 REMARK 3 16 2.3100 - 2.2700 0.95 1217 138 0.1957 0.2628 REMARK 3 17 2.2700 - 2.2200 0.94 1212 130 0.1969 0.2713 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 NULL REMARK 3 ANGLE : 1.456 NULL REMARK 3 CHIRALITY : 0.124 481 REMARK 3 PLANARITY : 0.014 581 REMARK 3 DIHEDRAL : 5.488 465 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9005 -11.1744 11.2061 REMARK 3 T TENSOR REMARK 3 T11: 0.3105 T22: 0.3614 REMARK 3 T33: 0.2730 T12: 0.0417 REMARK 3 T13: -0.0332 T23: 0.0881 REMARK 3 L TENSOR REMARK 3 L11: 2.7653 L22: 1.0184 REMARK 3 L33: 1.3135 L12: -0.4578 REMARK 3 L13: -0.4415 L23: -0.1251 REMARK 3 S TENSOR REMARK 3 S11: -0.0000 S12: 0.1242 S13: 0.4422 REMARK 3 S21: -0.0927 S22: 0.0291 S23: 0.2478 REMARK 3 S31: -0.1150 S32: -0.1192 S33: 0.0211 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 97 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6646 -15.2899 17.2157 REMARK 3 T TENSOR REMARK 3 T11: 0.2479 T22: 0.3164 REMARK 3 T33: 0.1887 T12: 0.0417 REMARK 3 T13: -0.0401 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 4.4742 L22: 2.7302 REMARK 3 L33: 1.0921 L12: 0.6770 REMARK 3 L13: -0.6629 L23: -0.2111 REMARK 3 S TENSOR REMARK 3 S11: -0.1677 S12: -0.0677 S13: 0.1199 REMARK 3 S21: 0.1678 S22: 0.1306 S23: -0.0573 REMARK 3 S31: -0.0589 S32: 0.0167 S33: 0.0075 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6095 -24.8721 -11.1604 REMARK 3 T TENSOR REMARK 3 T11: 0.2462 T22: 0.4496 REMARK 3 T33: 0.4366 T12: 0.0777 REMARK 3 T13: -0.0742 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 3.5118 L22: 3.3648 REMARK 3 L33: 2.9582 L12: -0.2286 REMARK 3 L13: 0.1657 L23: 0.2052 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: -0.0885 S13: -0.6685 REMARK 3 S21: 0.1126 S22: 0.0120 S23: -0.4476 REMARK 3 S31: 0.2467 S32: 0.5649 S33: -0.0957 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0755 -19.7026 -18.8118 REMARK 3 T TENSOR REMARK 3 T11: 0.2428 T22: 0.3415 REMARK 3 T33: 0.2617 T12: 0.0565 REMARK 3 T13: 0.0153 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 2.7471 L22: 2.4227 REMARK 3 L33: 2.2662 L12: 0.6608 REMARK 3 L13: 0.3390 L23: -0.0429 REMARK 3 S TENSOR REMARK 3 S11: -0.0144 S12: 0.2218 S13: -0.2310 REMARK 3 S21: -0.2208 S22: 0.0408 S23: -0.1152 REMARK 3 S31: 0.0287 S32: 0.2903 S33: -0.0506 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8STB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000274315. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95374 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24967 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 45.255 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 26.50 REMARK 200 R MERGE (I) : 0.18970 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 27.00 REMARK 200 R MERGE FOR SHELL (I) : 0.43710 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULPHATE, 0.001 M ZINC REMARK 280 CHLORIDE, AND 0.1 M BIS-TRIS, PH 6.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.37600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.01450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.01450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 125.06400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.01450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.01450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.68800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.01450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.01450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 125.06400 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.01450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.01450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.68800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.37600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 324 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 31 REMARK 465 SER B 32 REMARK 465 ASP B 33 REMARK 465 GLY B 34 REMARK 465 THR B 35 REMARK 465 GLU B 119 REMARK 465 HIS B 120 REMARK 465 THR B 121 REMARK 465 GLY B 122 REMARK 465 SER B 123 REMARK 465 GLY B 124 REMARK 465 SER B 161 REMARK 465 GLY B 162 REMARK 465 THR B 163 REMARK 465 ASP B 164 REMARK 465 GLY B 165 REMARK 465 GLY B 166 REMARK 465 GLY B 167 REMARK 465 THR A 31 REMARK 465 SER A 32 REMARK 465 ASP A 33 REMARK 465 GLY A 34 REMARK 465 THR A 35 REMARK 465 SER A 36 REMARK 465 GLU A 119 REMARK 465 HIS A 120 REMARK 465 THR A 121 REMARK 465 GLY A 122 REMARK 465 SER A 161 REMARK 465 GLY A 162 REMARK 465 THR A 163 REMARK 465 ASP A 164 REMARK 465 GLY A 165 REMARK 465 GLY A 166 REMARK 465 GLY A 167 REMARK 465 ARG A 168 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG B 150 O HOH B 301 1.46 REMARK 500 HH21 ARG A 207 O HOH A 402 1.47 REMARK 500 O HOH B 357 O HOH B 359 2.07 REMARK 500 O PRO A 125 O HOH A 401 2.13 REMARK 500 O HOH B 335 O HOH B 353 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH11 ARG A 44 OE1 GLU A 83 5544 1.58 REMARK 500 NH1 ARG A 44 OE1 GLU A 83 5544 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 229 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 LEU B 229 CB - CG - CD1 ANGL. DEV. = -10.4 DEGREES REMARK 500 GLN A 190 CA - CB - CG ANGL. DEV. = 20.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS B 49 -179.06 -170.85 REMARK 500 ALA B 97 -3.85 61.57 REMARK 500 ALA B 141 75.24 -102.09 REMARK 500 LEU A 96 -128.11 55.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 224 OE2 REMARK 620 2 HOH A 427 O 100.9 REMARK 620 3 HOH A 429 O 154.2 57.6 REMARK 620 N 1 2 DBREF1 8STB B -2 231 UNP A0A2I6B3F9_STRSQ DBREF2 8STB B A0A2I6B3F9 8 241 DBREF1 8STB A -2 231 UNP A0A2I6B3F9_STRSQ DBREF2 8STB A A0A2I6B3F9 8 241 SEQRES 1 B 234 PRO ALA PRO GLY GLU PRO THR TRP VAL ASP LEU LEU THR SEQRES 2 B 234 PRO ASP ARG GLY ALA ALA LEU GLN PHE TYR SER ALA LEU SEQRES 3 B 234 PHE GLY TRP GLU PHE SER THR THR SER ASP GLY THR SER SEQRES 4 B 234 PRO TYR THR MET CYS ARG LEU ARG GLY ARG GLU VAL CYS SEQRES 5 B 234 SER ILE GLY ASP LEU GLY GLU ASN PRO GLY PRO ALA LEU SEQRES 6 B 234 GLY GLY TRP SER SER TYR LEU SER VAL ASP ASP ALA ASP SEQRES 7 B 234 ALA ALA ALA ALA ALA VAL PRO GLU LEU GLY GLY ALA VAL SEQRES 8 B 234 LEU LEU GLY PRO ILE ASP ILE LEU ALA GLN GLY ARG MET SEQRES 9 B 234 LEU LEU ALA GLY ASP PRO SER GLY HIS ARG VAL GLY LEU SEQRES 10 B 234 TRP GLN ALA LYS GLU HIS THR GLY SER GLY PRO ASP ASP SEQRES 11 B 234 GLY ILE GLY ALA TYR THR ARG SER GLU LEU LEU THR GLY SEQRES 12 B 234 ALA SER ALA THR ASP GLY ALA PHE TYR ARG GLY LEU PHE SEQRES 13 B 234 GLY ALA ASP PHE ALA THR GLU SER GLY THR ASP GLY GLY SEQRES 14 B 234 GLY ARG ARG ALA ALA ILE ARG GLN VAL GLY PRO ALA ALA SEQRES 15 B 234 PRO SER GLY TRP TYR PRO CYS PHE ARG ALA GLN GLU SER SEQRES 16 B 234 ALA VAL PRO ALA ALA VAL MET LEU GLY ALA SER VAL LEU SEQRES 17 B 234 LEU ARG TYR ASP CYS PRO ASP GLY PRO ALA VAL VAL VAL SEQRES 18 B 234 SER ALA PRO GLY GLY GLU VAL PHE THR LEU LEU LEU THR SEQRES 1 A 234 PRO ALA PRO GLY GLU PRO THR TRP VAL ASP LEU LEU THR SEQRES 2 A 234 PRO ASP ARG GLY ALA ALA LEU GLN PHE TYR SER ALA LEU SEQRES 3 A 234 PHE GLY TRP GLU PHE SER THR THR SER ASP GLY THR SER SEQRES 4 A 234 PRO TYR THR MET CYS ARG LEU ARG GLY ARG GLU VAL CYS SEQRES 5 A 234 SER ILE GLY ASP LEU GLY GLU ASN PRO GLY PRO ALA LEU SEQRES 6 A 234 GLY GLY TRP SER SER TYR LEU SER VAL ASP ASP ALA ASP SEQRES 7 A 234 ALA ALA ALA ALA ALA VAL PRO GLU LEU GLY GLY ALA VAL SEQRES 8 A 234 LEU LEU GLY PRO ILE ASP ILE LEU ALA GLN GLY ARG MET SEQRES 9 A 234 LEU LEU ALA GLY ASP PRO SER GLY HIS ARG VAL GLY LEU SEQRES 10 A 234 TRP GLN ALA LYS GLU HIS THR GLY SER GLY PRO ASP ASP SEQRES 11 A 234 GLY ILE GLY ALA TYR THR ARG SER GLU LEU LEU THR GLY SEQRES 12 A 234 ALA SER ALA THR ASP GLY ALA PHE TYR ARG GLY LEU PHE SEQRES 13 A 234 GLY ALA ASP PHE ALA THR GLU SER GLY THR ASP GLY GLY SEQRES 14 A 234 GLY ARG ARG ALA ALA ILE ARG GLN VAL GLY PRO ALA ALA SEQRES 15 A 234 PRO SER GLY TRP TYR PRO CYS PHE ARG ALA GLN GLU SER SEQRES 16 A 234 ALA VAL PRO ALA ALA VAL MET LEU GLY ALA SER VAL LEU SEQRES 17 A 234 LEU ARG TYR ASP CYS PRO ASP GLY PRO ALA VAL VAL VAL SEQRES 18 A 234 SER ALA PRO GLY GLY GLU VAL PHE THR LEU LEU LEU THR HET GOL A 301 12 HET CL A 302 1 HET ZN A 303 1 HET ZN A 304 1 HET SO4 A 305 5 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 CL CL 1- FORMUL 5 ZN 2(ZN 2+) FORMUL 7 SO4 O4 S 2- FORMUL 8 HOH *96(H2 O) HELIX 1 AA1 ASP B 12 GLY B 25 1 14 HELIX 2 AA2 ASP B 73 LEU B 84 1 12 HELIX 3 AA3 ALA B 141 GLY B 154 1 14 HELIX 4 AA4 SER B 192 LEU B 200 1 9 HELIX 5 AA5 ASP A 12 GLY A 25 1 14 HELIX 6 AA6 ASP A 73 LEU A 84 1 12 HELIX 7 AA7 ALA A 141 GLY A 154 1 14 HELIX 8 AA8 SER A 192 LEU A 200 1 9 SHEET 1 AA1 7 TYR B 38 LEU B 43 0 SHEET 2 AA1 7 ARG B 46 ASP B 53 -1 O CYS B 49 N CYS B 41 SHEET 3 AA1 7 PRO B 3 THR B 10 1 N LEU B 8 O GLY B 52 SHEET 4 AA1 7 GLY B 64 SER B 70 -1 O SER B 66 N ASP B 7 SHEET 5 AA1 7 ARG B 111 ALA B 117 1 O GLY B 113 N LEU B 69 SHEET 6 AA1 7 GLY B 99 GLY B 105 -1 N ARG B 100 O GLN B 116 SHEET 7 AA1 7 ALA B 87 ASP B 94 -1 N ILE B 93 O MET B 101 SHEET 1 AA2 2 ALA B 61 LEU B 62 0 SHEET 2 AA2 2 ALA A 61 LEU A 62 -1 O ALA A 61 N LEU B 62 SHEET 1 AA3 6 ALA B 171 GLN B 174 0 SHEET 2 AA3 6 TYR B 132 THR B 139 1 N LEU B 137 O ARG B 173 SHEET 3 AA3 6 GLY B 182 ALA B 189 -1 O CYS B 186 N ARG B 134 SHEET 4 AA3 6 VAL B 225 LEU B 230 1 O THR B 227 N PHE B 187 SHEET 5 AA3 6 GLY B 213 SER B 219 -1 N VAL B 218 O PHE B 226 SHEET 6 AA3 6 SER B 203 CYS B 210 -1 N TYR B 208 O ALA B 215 SHEET 1 AA4 8 GLU A 27 SER A 29 0 SHEET 2 AA4 8 TYR A 38 LEU A 43 -1 O MET A 40 N SER A 29 SHEET 3 AA4 8 ARG A 46 ASP A 53 -1 O ILE A 51 N THR A 39 SHEET 4 AA4 8 PRO A 3 THR A 10 1 N LEU A 8 O GLY A 52 SHEET 5 AA4 8 GLY A 64 SER A 70 -1 O SER A 66 N ASP A 7 SHEET 6 AA4 8 ARG A 111 ALA A 117 1 O GLY A 113 N SER A 67 SHEET 7 AA4 8 GLY A 99 GLY A 105 -1 N ARG A 100 O GLN A 116 SHEET 8 AA4 8 ALA A 87 ILE A 95 -1 N LEU A 90 O LEU A 103 SHEET 1 AA5 6 ALA A 171 GLN A 174 0 SHEET 2 AA5 6 TYR A 132 THR A 139 1 N LEU A 137 O ARG A 173 SHEET 3 AA5 6 GLY A 182 ALA A 189 -1 O CYS A 186 N ARG A 134 SHEET 4 AA5 6 VAL A 225 LEU A 230 1 O THR A 227 N PRO A 185 SHEET 5 AA5 6 GLY A 213 SER A 219 -1 N VAL A 218 O PHE A 226 SHEET 6 AA5 6 SER A 203 CYS A 210 -1 N LEU A 205 O VAL A 217 LINK NH1 ARG A 111 ZN ZN A 303 1555 1555 2.65 LINK OE2 GLU A 224 ZN ZN A 304 1555 1555 2.69 LINK ZN ZN A 304 O HOH A 427 1555 1555 2.69 LINK ZN ZN A 304 O HOH A 429 1555 1555 2.39 CISPEP 1 GLY B 91 PRO B 92 0 6.93 CISPEP 2 GLY A 91 PRO A 92 0 4.60 CRYST1 76.029 76.029 166.752 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013153 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013153 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005997 0.00000