HEADER TRANSCRIPTION 17-MAY-23 8SVU TITLE CRYSTAL STRUCTURE OF THE L428V MUTANT OF PREGNANE X RECEPTOR LIGAND TITLE 2 BINDING DOMAIN IN APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR SUBFAMILY 1 GROUP I MEMBER 2, NUCLEAR COMPND 3 RECEPTOR COACTIVATOR 1 FUSION PROTEIN,NUCLEAR RECEPTOR COACTIVATOR 1; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: ORPHAN NUCLEAR RECEPTOR PAR1,ORPHAN NUCLEAR RECEPTOR PXR, COMPND 6 PREGNANE X RECEPTOR,STEROID AND XENOBIOTIC RECEPTOR,SXR,NCOA-1,CLASS COMPND 7 E BASIC HELIX-LOOP-HELIX PROTEIN 74,BHLHE74,PROTEIN HIN-2,RIP160, COMPND 8 RENAL CARCINOMA ANTIGEN NY-REN-52,STEROID RECEPTOR COACTIVATOR 1,SRC- COMPND 9 1; COMPND 10 EC: 2.3.1.48; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR1I2, PXR, NCOA1, BHLHE74, SRC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-3A KEYWDS PREGNANE X RECEPTOR (PXR), PROMISCUOUS LIGAND-ACTIVATED PROTEIN, KEYWDS 2 NUCLEAR RECEPTOR SUBFAMILY 1, TRANSCRIPTIONAL REGULATOR, DRUG KEYWDS 3 METABOLISM, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR E.GARCIA-MALDONADO,A.D.HUBER,S.NITHIANANTHAM,D.J.MILLER,T.CHEN REVDAT 2 05-JUN-24 8SVU 1 JRNL REVDAT 1 15-MAY-24 8SVU 0 JRNL AUTH E.GARCIA-MALDONADO,A.D.HUBER,S.C.CHAI,S.NITHIANANTHAM,Y.LI, JRNL AUTH 2 J.WU,S.POUDEL,D.J.MILLER,J.SEETHARAMAN,T.CHEN JRNL TITL CHEMICAL MANIPULATION OF AN ACTIVATION/INHIBITION SWITCH IN JRNL TITL 2 THE NUCLEAR RECEPTOR PXR. JRNL REF NAT COMMUN V. 15 4054 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38744881 JRNL DOI 10.1038/S41467-024-48472-1 REMARK 2 REMARK 2 RESOLUTION. 2.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 18719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.730 REMARK 3 FREE R VALUE TEST SET COUNT : 886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.8000 - 5.2500 1.00 3100 180 0.1988 0.2319 REMARK 3 2 5.2400 - 4.1700 1.00 3009 137 0.1852 0.2228 REMARK 3 3 4.1700 - 3.6400 1.00 2994 116 0.1957 0.2356 REMARK 3 4 3.6400 - 3.3100 1.00 2939 146 0.2149 0.2726 REMARK 3 5 3.3100 - 3.0700 1.00 2937 155 0.2502 0.2939 REMARK 3 6 3.0700 - 2.8900 0.98 2854 152 0.2569 0.2922 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4502 REMARK 3 ANGLE : 0.551 6084 REMARK 3 CHIRALITY : 0.039 688 REMARK 3 PLANARITY : 0.004 779 REMARK 3 DIHEDRAL : 12.866 1634 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 178) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8141 26.4398 35.6672 REMARK 3 T TENSOR REMARK 3 T11: 0.5172 T22: 0.4369 REMARK 3 T33: 0.5272 T12: 0.0080 REMARK 3 T13: -0.0989 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.6777 L22: 0.6824 REMARK 3 L33: 0.5693 L12: 0.0285 REMARK 3 L13: -0.6774 L23: 0.1589 REMARK 3 S TENSOR REMARK 3 S11: -0.1971 S12: 0.1752 S13: 0.7988 REMARK 3 S21: 0.0263 S22: 0.0018 S23: 0.2217 REMARK 3 S31: -0.5255 S32: -0.0443 S33: -0.0017 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 195 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1690 1.1644 13.9229 REMARK 3 T TENSOR REMARK 3 T11: 1.6428 T22: 0.8304 REMARK 3 T33: 1.4838 T12: 0.1814 REMARK 3 T13: -0.1182 T23: -0.2714 REMARK 3 L TENSOR REMARK 3 L11: -0.0132 L22: -0.0228 REMARK 3 L33: 0.0105 L12: -0.0042 REMARK 3 L13: -0.0250 L23: 0.0064 REMARK 3 S TENSOR REMARK 3 S11: -0.5700 S12: -0.2066 S13: -0.2957 REMARK 3 S21: 2.0968 S22: 0.4382 S23: -0.0662 REMARK 3 S31: -0.3071 S32: 0.4183 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3067 8.6109 20.4340 REMARK 3 T TENSOR REMARK 3 T11: 0.8058 T22: 1.0811 REMARK 3 T33: 0.8566 T12: 0.0187 REMARK 3 T13: -0.1059 T23: -0.3146 REMARK 3 L TENSOR REMARK 3 L11: 0.5599 L22: 0.4603 REMARK 3 L33: 0.1225 L12: 0.2683 REMARK 3 L13: 0.2149 L23: -0.0073 REMARK 3 S TENSOR REMARK 3 S11: 0.4169 S12: -0.0768 S13: -0.1278 REMARK 3 S21: -0.0623 S22: -0.5408 S23: -0.1987 REMARK 3 S31: 0.2079 S32: -0.5472 S33: -0.0242 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 388 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.2404 18.7640 35.4364 REMARK 3 T TENSOR REMARK 3 T11: 0.4663 T22: 0.4155 REMARK 3 T33: 0.5061 T12: 0.0090 REMARK 3 T13: -0.0156 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 2.0747 L22: 1.4653 REMARK 3 L33: 2.7557 L12: -0.5004 REMARK 3 L13: 0.4959 L23: 0.0256 REMARK 3 S TENSOR REMARK 3 S11: -0.0462 S12: -0.0330 S13: 0.0848 REMARK 3 S21: 0.0767 S22: -0.0482 S23: -0.1463 REMARK 3 S31: 0.1510 S32: 0.1384 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 389 THROUGH 458 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.5853 18.0696 22.6414 REMARK 3 T TENSOR REMARK 3 T11: 0.6857 T22: 0.7340 REMARK 3 T33: 0.6012 T12: 0.0467 REMARK 3 T13: -0.0183 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: -0.3191 L22: 0.1773 REMARK 3 L33: 0.5423 L12: 0.6300 REMARK 3 L13: 0.3585 L23: -0.2382 REMARK 3 S TENSOR REMARK 3 S11: 0.0190 S12: 0.2436 S13: -0.1385 REMARK 3 S21: -0.1963 S22: 0.0226 S23: -0.1908 REMARK 3 S31: 0.2805 S32: 0.6041 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 142 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0429 -10.4084 -8.5610 REMARK 3 T TENSOR REMARK 3 T11: 0.5943 T22: 0.7376 REMARK 3 T33: 0.6709 T12: 0.0129 REMARK 3 T13: 0.0107 T23: -0.0936 REMARK 3 L TENSOR REMARK 3 L11: 0.1902 L22: 0.0985 REMARK 3 L33: 0.1739 L12: -0.0117 REMARK 3 L13: -0.0171 L23: -0.1262 REMARK 3 S TENSOR REMARK 3 S11: 0.2986 S12: 0.4837 S13: -0.4238 REMARK 3 S21: -0.3120 S22: -0.3730 S23: -0.2491 REMARK 3 S31: -0.1363 S32: -0.3540 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 162 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1659 9.4498 11.6551 REMARK 3 T TENSOR REMARK 3 T11: 0.7334 T22: 0.8684 REMARK 3 T33: 0.8923 T12: -0.0877 REMARK 3 T13: 0.0733 T23: -0.0580 REMARK 3 L TENSOR REMARK 3 L11: 0.0876 L22: 0.6456 REMARK 3 L33: 0.3433 L12: -0.1822 REMARK 3 L13: 0.3935 L23: -0.0347 REMARK 3 S TENSOR REMARK 3 S11: -0.5720 S12: -0.2282 S13: 0.4305 REMARK 3 S21: -0.0429 S22: 0.2399 S23: 0.7318 REMARK 3 S31: -0.0900 S32: 1.0007 S33: -0.0009 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 210 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0533 9.8163 20.0712 REMARK 3 T TENSOR REMARK 3 T11: 0.6788 T22: 1.0166 REMARK 3 T33: 0.8493 T12: -0.1160 REMARK 3 T13: -0.0576 T23: -0.4120 REMARK 3 L TENSOR REMARK 3 L11: 0.2829 L22: 0.6210 REMARK 3 L33: 0.2962 L12: 0.0280 REMARK 3 L13: 0.0563 L23: -0.3962 REMARK 3 S TENSOR REMARK 3 S11: -0.0926 S12: -0.8894 S13: -0.4713 REMARK 3 S21: -0.0356 S22: 0.5280 S23: 0.2466 REMARK 3 S31: 0.1024 S32: -0.0992 S33: 0.0721 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 240 THROUGH 358 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7944 1.2540 5.2450 REMARK 3 T TENSOR REMARK 3 T11: 0.4850 T22: 0.4631 REMARK 3 T33: 0.4097 T12: 0.0074 REMARK 3 T13: -0.0257 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 2.4891 L22: 2.2423 REMARK 3 L33: 1.3108 L12: 0.5787 REMARK 3 L13: -0.8093 L23: 0.6840 REMARK 3 S TENSOR REMARK 3 S11: 0.1017 S12: -0.1797 S13: 0.2283 REMARK 3 S21: 0.1962 S22: -0.0500 S23: 0.1921 REMARK 3 S31: -0.0955 S32: -0.0748 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 359 THROUGH 388 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.4407 -12.6653 -0.0595 REMARK 3 T TENSOR REMARK 3 T11: 0.6257 T22: 0.6010 REMARK 3 T33: 0.7212 T12: 0.0217 REMARK 3 T13: -0.0389 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 0.5454 L22: 0.7005 REMARK 3 L33: 0.5652 L12: 0.6465 REMARK 3 L13: -0.3936 L23: 0.1001 REMARK 3 S TENSOR REMARK 3 S11: -0.1988 S12: -0.0593 S13: 0.1508 REMARK 3 S21: 0.1165 S22: 0.4826 S23: 0.5341 REMARK 3 S31: -0.0021 S32: -0.3421 S33: 0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 389 THROUGH 460 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9092 11.0805 5.4979 REMARK 3 T TENSOR REMARK 3 T11: 0.6063 T22: 0.5222 REMARK 3 T33: 0.5686 T12: -0.0296 REMARK 3 T13: -0.0587 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 1.0336 L22: 0.6377 REMARK 3 L33: 0.3956 L12: -0.7795 REMARK 3 L13: -0.2843 L23: -0.2171 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: 0.1085 S13: 0.5213 REMARK 3 S21: -0.1119 S22: 0.0931 S23: 0.5130 REMARK 3 S31: -0.1842 S32: -0.2561 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SVU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000274566. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18765 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.890 REMARK 200 RESOLUTION RANGE LOW (A) : 29.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.89300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RECTANGULAR SHAPED CRYSTAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM BIS-TRIS PH 6.0-7.0, 9-16% (V/V) REMARK 280 2-METHYL-2,4-PENTANEDIOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.63750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.06050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.88900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.06050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.63750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.88900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 465 HIS A 125 REMARK 465 HIS A 126 REMARK 465 HIS A 127 REMARK 465 HIS A 128 REMARK 465 GLY A 129 REMARK 465 SER A 130 REMARK 465 GLU A 131 REMARK 465 ARG A 132 REMARK 465 THR A 133 REMARK 465 GLY A 134 REMARK 465 THR A 135 REMARK 465 GLN A 136 REMARK 465 PRO A 137 REMARK 465 LEU A 138 REMARK 465 GLY A 139 REMARK 465 VAL A 140 REMARK 465 GLN A 141 REMARK 465 SER A 179 REMARK 465 SER A 180 REMARK 465 GLY A 181 REMARK 465 CYS A 182 REMARK 465 GLU A 183 REMARK 465 LEU A 184 REMARK 465 PRO A 185 REMARK 465 GLU A 186 REMARK 465 SER A 187 REMARK 465 LEU A 188 REMARK 465 GLN A 189 REMARK 465 ALA A 190 REMARK 465 PRO A 191 REMARK 465 SER A 192 REMARK 465 ARG A 193 REMARK 465 GLU A 194 REMARK 465 SER A 231 REMARK 465 GLY A 232 REMARK 465 THR A 311 REMARK 465 ALA A 312 REMARK 465 GLY A 313 REMARK 465 GLY A 314 REMARK 465 PHE A 315 REMARK 465 GLY A 433 REMARK 465 SER A 434 REMARK 465 SER A 435 REMARK 465 GLY A 436 REMARK 465 GLY A 437 REMARK 465 SER A 438 REMARK 465 GLY A 439 REMARK 465 GLY A 440 REMARK 465 SER A 441 REMARK 465 SER A 442 REMARK 465 HIS A 443 REMARK 465 SER A 444 REMARK 465 GLY A 460 REMARK 465 SER A 461 REMARK 465 PRO A 462 REMARK 465 SER A 463 REMARK 465 ASP A 464 REMARK 465 ILE A 465 REMARK 465 THR A 466 REMARK 465 THR A 467 REMARK 465 LEU A 468 REMARK 465 SER A 469 REMARK 465 VAL A 470 REMARK 465 GLU A 471 REMARK 465 PRO A 472 REMARK 465 ASP A 473 REMARK 465 HIS B 123 REMARK 465 HIS B 124 REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 GLY B 129 REMARK 465 SER B 130 REMARK 465 GLU B 131 REMARK 465 ARG B 132 REMARK 465 THR B 133 REMARK 465 GLY B 134 REMARK 465 THR B 135 REMARK 465 GLN B 136 REMARK 465 PRO B 137 REMARK 465 LEU B 138 REMARK 465 GLY B 139 REMARK 465 VAL B 140 REMARK 465 GLN B 141 REMARK 465 VAL B 177 REMARK 465 LEU B 178 REMARK 465 SER B 179 REMARK 465 SER B 180 REMARK 465 GLY B 181 REMARK 465 CYS B 182 REMARK 465 GLU B 183 REMARK 465 LEU B 184 REMARK 465 PRO B 185 REMARK 465 GLU B 186 REMARK 465 SER B 187 REMARK 465 LEU B 188 REMARK 465 GLN B 189 REMARK 465 ALA B 190 REMARK 465 PRO B 191 REMARK 465 SER B 192 REMARK 465 ARG B 193 REMARK 465 GLU B 194 REMARK 465 GLU B 195 REMARK 465 ALA B 196 REMARK 465 ALA B 197 REMARK 465 LYS B 198 REMARK 465 THR B 311 REMARK 465 ALA B 312 REMARK 465 GLY B 313 REMARK 465 GLY B 314 REMARK 465 PHE B 315 REMARK 465 GLN B 316 REMARK 465 THR B 432 REMARK 465 GLY B 433 REMARK 465 SER B 434 REMARK 465 SER B 435 REMARK 465 GLY B 436 REMARK 465 GLY B 437 REMARK 465 SER B 438 REMARK 465 GLY B 439 REMARK 465 GLY B 440 REMARK 465 SER B 441 REMARK 465 SER B 442 REMARK 465 HIS B 443 REMARK 465 SER B 444 REMARK 465 PRO B 462 REMARK 465 SER B 463 REMARK 465 ASP B 464 REMARK 465 ILE B 465 REMARK 465 THR B 466 REMARK 465 THR B 467 REMARK 465 LEU B 468 REMARK 465 SER B 469 REMARK 465 VAL B 470 REMARK 465 GLU B 471 REMARK 465 PRO B 472 REMARK 465 ASP B 473 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 VAL A 177 CG1 CG2 REMARK 470 LEU A 178 CG CD1 CD2 REMARK 470 GLU A 195 CG CD OE1 OE2 REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 TRP A 199 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 199 CZ3 CH2 REMARK 470 LYS A 204 CG CD CE NZ REMARK 470 LEU A 209 CG CD1 CD2 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 GLU A 235 CG CD OE1 OE2 REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 470 GLU A 309 CG CD OE1 OE2 REMARK 470 ASP A 310 CG OD1 OD2 REMARK 470 GLN A 316 CG CD OE1 NE2 REMARK 470 GLN A 317 CG CD OE1 NE2 REMARK 470 LEU A 318 CG CD1 CD2 REMARK 470 LEU A 319 CG CD1 CD2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 GLN A 383 CG CD OE1 NE2 REMARK 470 GLU A 448 CG CD OE1 OE2 REMARK 470 ARG A 449 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 451 CG CD CE NZ REMARK 470 GLU B 146 CG CD OE1 OE2 REMARK 470 TRP B 199 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 199 CZ3 CH2 REMARK 470 SER B 200 OG REMARK 470 GLN B 201 CG CD OE1 NE2 REMARK 470 VAL B 202 CG1 CG2 REMARK 470 ARG B 203 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 204 CG CD CE NZ REMARK 470 LEU B 206 CG CD1 CD2 REMARK 470 CYS B 207 SG REMARK 470 LYS B 210 CG CD CE NZ REMARK 470 ARG B 216 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 218 CG CD OE1 OE2 REMARK 470 LYS B 226 CG CD CE NZ REMARK 470 SER B 231 OG REMARK 470 LYS B 234 CG CD CE NZ REMARK 470 GLU B 235 CG CD OE1 OE2 REMARK 470 PHE B 237 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 303 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 309 CG CD OE1 OE2 REMARK 470 ASP B 310 CG OD1 OD2 REMARK 470 GLN B 317 CG CD OE1 NE2 REMARK 470 LEU B 318 CG CD1 CD2 REMARK 470 LEU B 319 CG CD1 CD2 REMARK 470 LEU B 320 CG CD1 CD2 REMARK 470 LYS B 325 CG CD CE NZ REMARK 470 ARG B 410 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 448 CG CD OE1 OE2 REMARK 470 LYS B 451 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 209 79.62 -110.89 REMARK 500 PHE A 237 30.59 -98.58 REMARK 500 CYS A 301 66.81 -104.38 REMARK 500 HIS A 386 41.94 -97.10 REMARK 500 PHE A 420 -5.62 -148.68 REMARK 500 SER B 231 82.00 -160.44 REMARK 500 LYS B 234 -43.49 69.75 REMARK 500 CYS B 301 59.72 -103.72 REMARK 500 HIS B 450 72.98 -112.85 REMARK 500 REMARK 500 REMARK: NULL DBREF 8SVU A 130 434 UNP O75469 NR1I2_HUMAN 130 434 DBREF 8SVU A 441 473 UNP Q15788 NCOA1_HUMAN 678 710 DBREF 8SVU B 130 434 UNP O75469 NR1I2_HUMAN 130 434 DBREF 8SVU B 441 473 UNP Q15788 NCOA1_HUMAN 678 710 SEQADV 8SVU HIS A 123 UNP O75469 EXPRESSION TAG SEQADV 8SVU HIS A 124 UNP O75469 EXPRESSION TAG SEQADV 8SVU HIS A 125 UNP O75469 EXPRESSION TAG SEQADV 8SVU HIS A 126 UNP O75469 EXPRESSION TAG SEQADV 8SVU HIS A 127 UNP O75469 EXPRESSION TAG SEQADV 8SVU HIS A 128 UNP O75469 EXPRESSION TAG SEQADV 8SVU GLY A 129 UNP O75469 EXPRESSION TAG SEQADV 8SVU VAL A 428 UNP O75469 LEU 428 ENGINEERED MUTATION SEQADV 8SVU SER A 435 UNP O75469 LINKER SEQADV 8SVU GLY A 436 UNP O75469 LINKER SEQADV 8SVU GLY A 437 UNP O75469 LINKER SEQADV 8SVU SER A 438 UNP O75469 LINKER SEQADV 8SVU GLY A 439 UNP O75469 LINKER SEQADV 8SVU GLY A 440 UNP O75469 LINKER SEQADV 8SVU HIS B 123 UNP O75469 EXPRESSION TAG SEQADV 8SVU HIS B 124 UNP O75469 EXPRESSION TAG SEQADV 8SVU HIS B 125 UNP O75469 EXPRESSION TAG SEQADV 8SVU HIS B 126 UNP O75469 EXPRESSION TAG SEQADV 8SVU HIS B 127 UNP O75469 EXPRESSION TAG SEQADV 8SVU HIS B 128 UNP O75469 EXPRESSION TAG SEQADV 8SVU GLY B 129 UNP O75469 EXPRESSION TAG SEQADV 8SVU VAL B 428 UNP O75469 LEU 428 ENGINEERED MUTATION SEQADV 8SVU SER B 435 UNP O75469 LINKER SEQADV 8SVU GLY B 436 UNP O75469 LINKER SEQADV 8SVU GLY B 437 UNP O75469 LINKER SEQADV 8SVU SER B 438 UNP O75469 LINKER SEQADV 8SVU GLY B 439 UNP O75469 LINKER SEQADV 8SVU GLY B 440 UNP O75469 LINKER SEQRES 1 A 351 HIS HIS HIS HIS HIS HIS GLY SER GLU ARG THR GLY THR SEQRES 2 A 351 GLN PRO LEU GLY VAL GLN GLY LEU THR GLU GLU GLN ARG SEQRES 3 A 351 MET MET ILE ARG GLU LEU MET ASP ALA GLN MET LYS THR SEQRES 4 A 351 PHE ASP THR THR PHE SER HIS PHE LYS ASN PHE ARG LEU SEQRES 5 A 351 PRO GLY VAL LEU SER SER GLY CYS GLU LEU PRO GLU SER SEQRES 6 A 351 LEU GLN ALA PRO SER ARG GLU GLU ALA ALA LYS TRP SER SEQRES 7 A 351 GLN VAL ARG LYS ASP LEU CYS SER LEU LYS VAL SER LEU SEQRES 8 A 351 GLN LEU ARG GLY GLU ASP GLY SER VAL TRP ASN TYR LYS SEQRES 9 A 351 PRO PRO ALA ASP SER GLY GLY LYS GLU ILE PHE SER LEU SEQRES 10 A 351 LEU PRO HIS MET ALA ASP MET SER THR TYR MET PHE LYS SEQRES 11 A 351 GLY ILE ILE SER PHE ALA LYS VAL ILE SER TYR PHE ARG SEQRES 12 A 351 ASP LEU PRO ILE GLU ASP GLN ILE SER LEU LEU LYS GLY SEQRES 13 A 351 ALA ALA PHE GLU LEU CYS GLN LEU ARG PHE ASN THR VAL SEQRES 14 A 351 PHE ASN ALA GLU THR GLY THR TRP GLU CYS GLY ARG LEU SEQRES 15 A 351 SER TYR CYS LEU GLU ASP THR ALA GLY GLY PHE GLN GLN SEQRES 16 A 351 LEU LEU LEU GLU PRO MET LEU LYS PHE HIS TYR MET LEU SEQRES 17 A 351 LYS LYS LEU GLN LEU HIS GLU GLU GLU TYR VAL LEU MET SEQRES 18 A 351 GLN ALA ILE SER LEU PHE SER PRO ASP ARG PRO GLY VAL SEQRES 19 A 351 LEU GLN HIS ARG VAL VAL ASP GLN LEU GLN GLU GLN PHE SEQRES 20 A 351 ALA ILE THR LEU LYS SER TYR ILE GLU CYS ASN ARG PRO SEQRES 21 A 351 GLN PRO ALA HIS ARG PHE LEU PHE LEU LYS ILE MET ALA SEQRES 22 A 351 MET LEU THR GLU LEU ARG SER ILE ASN ALA GLN HIS THR SEQRES 23 A 351 GLN ARG LEU LEU ARG ILE GLN ASP ILE HIS PRO PHE ALA SEQRES 24 A 351 THR PRO LEU MET GLN GLU VAL PHE GLY ILE THR GLY SER SEQRES 25 A 351 SER GLY GLY SER GLY GLY SER SER HIS SER SER LEU THR SEQRES 26 A 351 GLU ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU GLY SEQRES 27 A 351 SER PRO SER ASP ILE THR THR LEU SER VAL GLU PRO ASP SEQRES 1 B 351 HIS HIS HIS HIS HIS HIS GLY SER GLU ARG THR GLY THR SEQRES 2 B 351 GLN PRO LEU GLY VAL GLN GLY LEU THR GLU GLU GLN ARG SEQRES 3 B 351 MET MET ILE ARG GLU LEU MET ASP ALA GLN MET LYS THR SEQRES 4 B 351 PHE ASP THR THR PHE SER HIS PHE LYS ASN PHE ARG LEU SEQRES 5 B 351 PRO GLY VAL LEU SER SER GLY CYS GLU LEU PRO GLU SER SEQRES 6 B 351 LEU GLN ALA PRO SER ARG GLU GLU ALA ALA LYS TRP SER SEQRES 7 B 351 GLN VAL ARG LYS ASP LEU CYS SER LEU LYS VAL SER LEU SEQRES 8 B 351 GLN LEU ARG GLY GLU ASP GLY SER VAL TRP ASN TYR LYS SEQRES 9 B 351 PRO PRO ALA ASP SER GLY GLY LYS GLU ILE PHE SER LEU SEQRES 10 B 351 LEU PRO HIS MET ALA ASP MET SER THR TYR MET PHE LYS SEQRES 11 B 351 GLY ILE ILE SER PHE ALA LYS VAL ILE SER TYR PHE ARG SEQRES 12 B 351 ASP LEU PRO ILE GLU ASP GLN ILE SER LEU LEU LYS GLY SEQRES 13 B 351 ALA ALA PHE GLU LEU CYS GLN LEU ARG PHE ASN THR VAL SEQRES 14 B 351 PHE ASN ALA GLU THR GLY THR TRP GLU CYS GLY ARG LEU SEQRES 15 B 351 SER TYR CYS LEU GLU ASP THR ALA GLY GLY PHE GLN GLN SEQRES 16 B 351 LEU LEU LEU GLU PRO MET LEU LYS PHE HIS TYR MET LEU SEQRES 17 B 351 LYS LYS LEU GLN LEU HIS GLU GLU GLU TYR VAL LEU MET SEQRES 18 B 351 GLN ALA ILE SER LEU PHE SER PRO ASP ARG PRO GLY VAL SEQRES 19 B 351 LEU GLN HIS ARG VAL VAL ASP GLN LEU GLN GLU GLN PHE SEQRES 20 B 351 ALA ILE THR LEU LYS SER TYR ILE GLU CYS ASN ARG PRO SEQRES 21 B 351 GLN PRO ALA HIS ARG PHE LEU PHE LEU LYS ILE MET ALA SEQRES 22 B 351 MET LEU THR GLU LEU ARG SER ILE ASN ALA GLN HIS THR SEQRES 23 B 351 GLN ARG LEU LEU ARG ILE GLN ASP ILE HIS PRO PHE ALA SEQRES 24 B 351 THR PRO LEU MET GLN GLU VAL PHE GLY ILE THR GLY SER SEQRES 25 B 351 SER GLY GLY SER GLY GLY SER SER HIS SER SER LEU THR SEQRES 26 B 351 GLU ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU GLY SEQRES 27 B 351 SER PRO SER ASP ILE THR THR LEU SER VAL GLU PRO ASP HET GOL B 503 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *5(H2 O) HELIX 1 AA1 THR A 144 PHE A 162 1 19 HELIX 2 AA2 ALA A 196 LEU A 209 1 14 HELIX 3 AA3 LYS A 234 SER A 238 5 5 HELIX 4 AA4 LEU A 239 ILE A 261 1 23 HELIX 5 AA5 ILE A 261 ASP A 266 1 6 HELIX 6 AA6 PRO A 268 THR A 290 1 23 HELIX 7 AA7 GLU A 321 LEU A 333 1 13 HELIX 8 AA8 HIS A 336 PHE A 349 1 14 HELIX 9 AA9 GLN A 358 ARG A 381 1 24 HELIX 10 AB1 PHE A 388 HIS A 418 1 31 HELIX 11 AB2 THR A 422 PHE A 429 1 8 HELIX 12 AB3 LEU A 446 HIS A 450 1 5 HELIX 13 AB4 HIS A 450 GLU A 459 1 10 HELIX 14 AB5 THR B 144 PHE B 162 1 19 HELIX 15 AB6 SER B 200 LEU B 209 1 10 HELIX 16 AB7 LYS B 234 SER B 238 5 5 HELIX 17 AB8 LEU B 239 VAL B 260 1 22 HELIX 18 AB9 ILE B 261 ASP B 266 1 6 HELIX 19 AC1 PRO B 268 VAL B 291 1 24 HELIX 20 AC2 GLN B 317 LEU B 320 5 4 HELIX 21 AC3 GLU B 321 LEU B 333 1 13 HELIX 22 AC4 HIS B 336 PHE B 349 1 14 HELIX 23 AC5 GLN B 358 ARG B 381 1 24 HELIX 24 AC6 GLN B 383 ARG B 387 5 5 HELIX 25 AC7 PHE B 388 HIS B 418 1 31 HELIX 26 AC8 THR B 422 PHE B 429 1 8 HELIX 27 AC9 LEU B 446 HIS B 450 1 5 HELIX 28 AD1 HIS B 450 GLU B 459 1 10 SHEET 1 AA110 PHE A 292 ASN A 293 0 SHEET 2 AA110 THR A 298 CYS A 301 -1 O THR A 298 N ASN A 293 SHEET 3 AA110 LEU A 304 LEU A 308 -1 O TYR A 306 N TRP A 299 SHEET 4 AA110 VAL A 211 ARG A 216 -1 N SER A 212 O CYS A 307 SHEET 5 AA110 VAL A 222 LYS A 226 -1 O TRP A 223 N LEU A 215 SHEET 6 AA110 VAL B 222 LYS B 226 -1 O ASN B 224 N ASN A 224 SHEET 7 AA110 VAL B 211 ARG B 216 -1 N LEU B 213 O TYR B 225 SHEET 8 AA110 LEU B 304 LEU B 308 -1 O CYS B 307 N SER B 212 SHEET 9 AA110 THR B 298 CYS B 301 -1 N TRP B 299 O TYR B 306 SHEET 10 AA110 PHE B 292 ASN B 293 -1 N ASN B 293 O THR B 298 CRYST1 85.275 89.778 106.121 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011727 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011139 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009423 0.00000