HEADER TRANSFERASE 19-MAY-23 8SWY TITLE PARP4 ART DOMAIN BOUND TO NADH COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN MONO-ADP-RIBOSYLTRANSFERASE PARP4; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: 193 KDA VAULT PROTEIN,ADP-RIBOSYLTRANSFERASE DIPHTHERIA COMPND 5 TOXIN-LIKE 4,ARTD4,PARP-RELATED/IALPHAI-RELATED H5/PROLINE-RICH,PH5P, COMPND 6 POLY [ADP-RIBOSE] POLYMERASE 4,PARP-4,VAULT POLY(ADP-RIBOSE) COMPND 7 POLYMERASE,VPARP; COMPND 8 EC: 2.4.2.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARP4, ADPRTL1, KIAA0177, PARPL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PARP FAMILY, ADP-RIBOSYLTRANSFERASE, MARYLATION, VAULT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.FRIGON,J.M.PASCAL REVDAT 3 20-DEC-23 8SWY 1 JRNL REVDAT 2 29-NOV-23 8SWY 1 JRNL REVDAT 1 08-NOV-23 8SWY 0 JRNL AUTH L.FRIGON,J.M.PASCAL JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSIS OF THE PARP1-HOMOLOGY JRNL TITL 2 REGION OF PARP4/VAULT PARP. JRNL REF NUCLEIC ACIDS RES. V. 51 12492 2023 JRNL REFN ESSN 1362-4962 JRNL PMID 37971310 JRNL DOI 10.1093/NAR/GKAD1064 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.310 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 58576 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2924 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4100 - 7.0300 1.00 2637 165 0.1780 0.2097 REMARK 3 2 7.0300 - 5.5800 1.00 2628 139 0.2308 0.2768 REMARK 3 3 5.5800 - 4.8800 1.00 2689 113 0.1837 0.2323 REMARK 3 4 4.8800 - 4.4300 1.00 2626 133 0.1725 0.1987 REMARK 3 5 4.4300 - 4.1100 1.00 2666 155 0.1686 0.2115 REMARK 3 6 4.1100 - 3.8700 1.00 2649 131 0.2101 0.2411 REMARK 3 7 3.8700 - 3.6800 1.00 2656 111 0.2060 0.2374 REMARK 3 8 3.6800 - 3.5200 1.00 2682 123 0.2160 0.3284 REMARK 3 9 3.5200 - 3.3800 1.00 2645 136 0.2031 0.3103 REMARK 3 10 3.3800 - 3.2700 1.00 2653 155 0.2543 0.3059 REMARK 3 11 3.2700 - 3.1600 1.00 2655 117 0.2709 0.3054 REMARK 3 12 3.1600 - 3.0700 1.00 2591 171 0.2693 0.3146 REMARK 3 13 3.0700 - 2.9900 1.00 2679 122 0.2568 0.3398 REMARK 3 14 2.9900 - 2.9200 1.00 2664 152 0.2625 0.2866 REMARK 3 15 2.9200 - 2.8500 1.00 2623 167 0.2615 0.3104 REMARK 3 16 2.8500 - 2.7900 1.00 2640 142 0.2788 0.3088 REMARK 3 17 2.7900 - 2.7400 1.00 2634 136 0.2984 0.3514 REMARK 3 18 2.7400 - 2.6800 1.00 2683 122 0.3322 0.3662 REMARK 3 19 2.6800 - 2.6400 1.00 2671 151 0.3445 0.4069 REMARK 3 20 2.6400 - 2.5900 1.00 2609 138 0.3745 0.4334 REMARK 3 21 2.5900 - 2.5500 1.00 2672 145 0.4018 0.4316 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5892 REMARK 3 ANGLE : 1.299 7976 REMARK 3 CHIRALITY : 0.070 923 REMARK 3 PLANARITY : 0.011 1011 REMARK 3 DIHEDRAL : 15.522 2192 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 29.9878 12.5248 29.2130 REMARK 3 T TENSOR REMARK 3 T11: 0.5818 T22: 0.7386 REMARK 3 T33: 0.6416 T12: -0.0527 REMARK 3 T13: 0.0375 T23: -0.0556 REMARK 3 L TENSOR REMARK 3 L11: 0.4689 L22: 0.5277 REMARK 3 L33: 0.7542 L12: 0.0594 REMARK 3 L13: -0.1451 L23: -0.6430 REMARK 3 S TENSOR REMARK 3 S11: 0.1181 S12: -0.1501 S13: 0.0353 REMARK 3 S21: -0.0947 S22: -0.1197 S23: 0.0779 REMARK 3 S31: 0.0402 S32: 0.1524 S33: 0.0137 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SWY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000274465. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58576 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 46.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 1.42600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG3350, 0.2M SODIUM CITRATE REMARK 280 TRIBASIC DIHYDRATE, 1% ETHYLENE GLYCOL, 800UM NADH, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.30050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.30050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.45200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 75.84950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 58.45200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 75.84950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.30050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 58.45200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 75.84950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.30050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 58.45200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 75.84950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 315 REMARK 465 GLY A 359 REMARK 465 SER A 360 REMARK 465 GLY A 361 REMARK 465 SER A 362 REMARK 465 GLY A 363 REMARK 465 GLY A 364 REMARK 465 SER A 365 REMARK 465 LYS A 366 REMARK 465 LYS A 572 REMARK 465 ASP A 573 REMARK 465 SER B 315 REMARK 465 GLY B 357 REMARK 465 SER B 358 REMARK 465 GLY B 359 REMARK 465 SER B 360 REMARK 465 GLY B 361 REMARK 465 SER B 362 REMARK 465 GLY B 363 REMARK 465 GLY B 364 REMARK 465 SER B 365 REMARK 465 LYS B 366 REMARK 465 PRO B 367 REMARK 465 VAL B 459 REMARK 465 GLU B 460 REMARK 465 ASP B 461 REMARK 465 ARG B 462 REMARK 465 GLY B 463 REMARK 465 VAL B 464 REMARK 465 GLN B 465 REMARK 465 ARG B 466 REMARK 465 ILE B 571 REMARK 465 LYS B 572 REMARK 465 ASP B 573 REMARK 465 SER C 315 REMARK 465 GLY C 359 REMARK 465 SER C 360 REMARK 465 GLY C 361 REMARK 465 SER C 362 REMARK 465 GLY C 363 REMARK 465 GLY C 364 REMARK 465 SER C 365 REMARK 465 LYS C 366 REMARK 465 PRO C 367 REMARK 465 ASN C 368 REMARK 465 PRO C 369 REMARK 465 ARG C 462 REMARK 465 GLY C 463 REMARK 465 VAL C 464 REMARK 465 GLN C 465 REMARK 465 ILE C 571 REMARK 465 LYS C 572 REMARK 465 ASP C 573 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE MET B 343 O HOH B 703 1.51 REMARK 500 O HOH A 1117 O HOH A 1122 1.59 REMARK 500 CB SER C 534 OD1 ASP C 546 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER C 334 N - CA - CB ANGL. DEV. = 12.1 DEGREES REMARK 500 SER C 334 N - CA - C ANGL. DEV. = -21.9 DEGREES REMARK 500 GLU C 460 N - CA - C ANGL. DEV. = 21.2 DEGREES REMARK 500 ASP C 461 N - CA - CB ANGL. DEV. = 30.1 DEGREES REMARK 500 ASP C 461 N - CA - C ANGL. DEV. = -20.3 DEGREES REMARK 500 GLY C 532 N - CA - C ANGL. DEV. = -19.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 371 61.90 -103.05 REMARK 500 LYS A 406 17.52 57.52 REMARK 500 GLU A 460 -23.35 -143.33 REMARK 500 ASP A 517 86.99 -153.63 REMARK 500 MET B 328 -156.42 -115.29 REMARK 500 ASN B 402 41.98 -107.93 REMARK 500 ASP B 517 86.65 -155.34 REMARK 500 LYS B 559 -51.83 -127.52 REMARK 500 LEU C 333 -158.39 78.88 REMARK 500 LEU C 356 42.11 -105.04 REMARK 500 SER C 371 33.37 -86.50 REMARK 500 ASN C 402 63.66 -104.07 REMARK 500 ASN C 432 39.53 38.51 REMARK 500 CYS C 450 -68.13 -94.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG C 451 0.10 SIDE CHAIN REMARK 500 ARG C 466 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8SWY A 316 356 UNP Q9UKK3 PARP4_HUMAN 242 282 DBREF 8SWY A 365 573 UNP Q9UKK3 PARP4_HUMAN 365 573 DBREF 8SWY B 316 356 UNP Q9UKK3 PARP4_HUMAN 242 282 DBREF 8SWY B 365 573 UNP Q9UKK3 PARP4_HUMAN 365 573 DBREF 8SWY C 316 356 UNP Q9UKK3 PARP4_HUMAN 242 282 DBREF 8SWY C 365 573 UNP Q9UKK3 PARP4_HUMAN 365 573 SEQADV 8SWY SER A 315 UNP Q9UKK3 EXPRESSION TAG SEQADV 8SWY GLY A 357 UNP Q9UKK3 LINKER SEQADV 8SWY SER A 358 UNP Q9UKK3 LINKER SEQADV 8SWY GLY A 359 UNP Q9UKK3 LINKER SEQADV 8SWY SER A 360 UNP Q9UKK3 LINKER SEQADV 8SWY GLY A 361 UNP Q9UKK3 LINKER SEQADV 8SWY SER A 362 UNP Q9UKK3 LINKER SEQADV 8SWY GLY A 363 UNP Q9UKK3 LINKER SEQADV 8SWY GLY A 364 UNP Q9UKK3 LINKER SEQADV 8SWY SER B 315 UNP Q9UKK3 EXPRESSION TAG SEQADV 8SWY GLY B 357 UNP Q9UKK3 LINKER SEQADV 8SWY SER B 358 UNP Q9UKK3 LINKER SEQADV 8SWY GLY B 359 UNP Q9UKK3 LINKER SEQADV 8SWY SER B 360 UNP Q9UKK3 LINKER SEQADV 8SWY GLY B 361 UNP Q9UKK3 LINKER SEQADV 8SWY SER B 362 UNP Q9UKK3 LINKER SEQADV 8SWY GLY B 363 UNP Q9UKK3 LINKER SEQADV 8SWY GLY B 364 UNP Q9UKK3 LINKER SEQADV 8SWY SER C 315 UNP Q9UKK3 EXPRESSION TAG SEQADV 8SWY GLY C 357 UNP Q9UKK3 LINKER SEQADV 8SWY SER C 358 UNP Q9UKK3 LINKER SEQADV 8SWY GLY C 359 UNP Q9UKK3 LINKER SEQADV 8SWY SER C 360 UNP Q9UKK3 LINKER SEQADV 8SWY GLY C 361 UNP Q9UKK3 LINKER SEQADV 8SWY SER C 362 UNP Q9UKK3 LINKER SEQADV 8SWY GLY C 363 UNP Q9UKK3 LINKER SEQADV 8SWY GLY C 364 UNP Q9UKK3 LINKER SEQRES 1 A 259 SER SER GLU GLN LEU GLN ALA LEU LEU LEU GLU GLU VAL SEQRES 2 A 259 MET ASN SER SER THR LEU SER GLN GLU VAL SER ASP LEU SEQRES 3 A 259 VAL GLU MET ILE TRP ALA GLU ALA LEU GLY HIS LEU GLU SEQRES 4 A 259 HIS MET LEU GLY SER GLY SER GLY SER GLY GLY SER LYS SEQRES 5 A 259 PRO ASN PRO PRO SER LEU ALA LYS TYR ARG ALA LEU ARG SEQRES 6 A 259 CYS LYS ILE GLU HIS VAL GLU GLN ASN THR GLU GLU PHE SEQRES 7 A 259 LEU ARG VAL ARG LYS GLU VAL LEU GLN ASN HIS HIS SER SEQRES 8 A 259 LYS SER PRO VAL ASP VAL LEU GLN ILE PHE ARG VAL GLY SEQRES 9 A 259 ARG VAL ASN GLU THR THR GLU PHE LEU SER LYS LEU GLY SEQRES 10 A 259 ASN VAL ARG PRO LEU LEU HIS GLY SER PRO VAL GLN ASN SEQRES 11 A 259 ILE VAL GLY ILE LEU CYS ARG GLY LEU LEU LEU PRO LYS SEQRES 12 A 259 VAL VAL GLU ASP ARG GLY VAL GLN ARG THR ASP VAL GLY SEQRES 13 A 259 ASN LEU GLY SER GLY ILE TYR PHE SER ASP SER LEU SER SEQRES 14 A 259 THR SER ILE LYS TYR SER HIS PRO GLY GLU THR ASP GLY SEQRES 15 A 259 THR ARG LEU LEU LEU ILE CYS ASP VAL ALA LEU GLY LYS SEQRES 16 A 259 CYS MET ASP LEU HIS GLU LYS ASP PHE SER LEU THR GLU SEQRES 17 A 259 ALA PRO PRO GLY TYR ASP SER VAL HIS GLY VAL SER GLN SEQRES 18 A 259 THR ALA SER VAL THR THR ASP PHE GLU ASP ASP GLU PHE SEQRES 19 A 259 VAL VAL TYR LYS THR ASN GLN VAL LYS MET LYS TYR ILE SEQRES 20 A 259 ILE LYS PHE SER MET PRO GLY ASP GLN ILE LYS ASP SEQRES 1 B 259 SER SER GLU GLN LEU GLN ALA LEU LEU LEU GLU GLU VAL SEQRES 2 B 259 MET ASN SER SER THR LEU SER GLN GLU VAL SER ASP LEU SEQRES 3 B 259 VAL GLU MET ILE TRP ALA GLU ALA LEU GLY HIS LEU GLU SEQRES 4 B 259 HIS MET LEU GLY SER GLY SER GLY SER GLY GLY SER LYS SEQRES 5 B 259 PRO ASN PRO PRO SER LEU ALA LYS TYR ARG ALA LEU ARG SEQRES 6 B 259 CYS LYS ILE GLU HIS VAL GLU GLN ASN THR GLU GLU PHE SEQRES 7 B 259 LEU ARG VAL ARG LYS GLU VAL LEU GLN ASN HIS HIS SER SEQRES 8 B 259 LYS SER PRO VAL ASP VAL LEU GLN ILE PHE ARG VAL GLY SEQRES 9 B 259 ARG VAL ASN GLU THR THR GLU PHE LEU SER LYS LEU GLY SEQRES 10 B 259 ASN VAL ARG PRO LEU LEU HIS GLY SER PRO VAL GLN ASN SEQRES 11 B 259 ILE VAL GLY ILE LEU CYS ARG GLY LEU LEU LEU PRO LYS SEQRES 12 B 259 VAL VAL GLU ASP ARG GLY VAL GLN ARG THR ASP VAL GLY SEQRES 13 B 259 ASN LEU GLY SER GLY ILE TYR PHE SER ASP SER LEU SER SEQRES 14 B 259 THR SER ILE LYS TYR SER HIS PRO GLY GLU THR ASP GLY SEQRES 15 B 259 THR ARG LEU LEU LEU ILE CYS ASP VAL ALA LEU GLY LYS SEQRES 16 B 259 CYS MET ASP LEU HIS GLU LYS ASP PHE SER LEU THR GLU SEQRES 17 B 259 ALA PRO PRO GLY TYR ASP SER VAL HIS GLY VAL SER GLN SEQRES 18 B 259 THR ALA SER VAL THR THR ASP PHE GLU ASP ASP GLU PHE SEQRES 19 B 259 VAL VAL TYR LYS THR ASN GLN VAL LYS MET LYS TYR ILE SEQRES 20 B 259 ILE LYS PHE SER MET PRO GLY ASP GLN ILE LYS ASP SEQRES 1 C 259 SER SER GLU GLN LEU GLN ALA LEU LEU LEU GLU GLU VAL SEQRES 2 C 259 MET ASN SER SER THR LEU SER GLN GLU VAL SER ASP LEU SEQRES 3 C 259 VAL GLU MET ILE TRP ALA GLU ALA LEU GLY HIS LEU GLU SEQRES 4 C 259 HIS MET LEU GLY SER GLY SER GLY SER GLY GLY SER LYS SEQRES 5 C 259 PRO ASN PRO PRO SER LEU ALA LYS TYR ARG ALA LEU ARG SEQRES 6 C 259 CYS LYS ILE GLU HIS VAL GLU GLN ASN THR GLU GLU PHE SEQRES 7 C 259 LEU ARG VAL ARG LYS GLU VAL LEU GLN ASN HIS HIS SER SEQRES 8 C 259 LYS SER PRO VAL ASP VAL LEU GLN ILE PHE ARG VAL GLY SEQRES 9 C 259 ARG VAL ASN GLU THR THR GLU PHE LEU SER LYS LEU GLY SEQRES 10 C 259 ASN VAL ARG PRO LEU LEU HIS GLY SER PRO VAL GLN ASN SEQRES 11 C 259 ILE VAL GLY ILE LEU CYS ARG GLY LEU LEU LEU PRO LYS SEQRES 12 C 259 VAL VAL GLU ASP ARG GLY VAL GLN ARG THR ASP VAL GLY SEQRES 13 C 259 ASN LEU GLY SER GLY ILE TYR PHE SER ASP SER LEU SER SEQRES 14 C 259 THR SER ILE LYS TYR SER HIS PRO GLY GLU THR ASP GLY SEQRES 15 C 259 THR ARG LEU LEU LEU ILE CYS ASP VAL ALA LEU GLY LYS SEQRES 16 C 259 CYS MET ASP LEU HIS GLU LYS ASP PHE SER LEU THR GLU SEQRES 17 C 259 ALA PRO PRO GLY TYR ASP SER VAL HIS GLY VAL SER GLN SEQRES 18 C 259 THR ALA SER VAL THR THR ASP PHE GLU ASP ASP GLU PHE SEQRES 19 C 259 VAL VAL TYR LYS THR ASN GLN VAL LYS MET LYS TYR ILE SEQRES 20 C 259 ILE LYS PHE SER MET PRO GLY ASP GLN ILE LYS ASP HET NAI A1001 44 HET GOL A1002 6 HET GOL A1003 6 HET GOL B 601 6 HET NAI B 602 44 HET GOL B 603 6 HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM GOL GLYCEROL HETSYN NAI NADH HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 NAI 2(C21 H29 N7 O14 P2) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 10 HOH *51(H2 O) HELIX 1 AA1 SER A 316 SER A 331 1 16 HELIX 2 AA2 SER A 334 GLY A 357 1 24 HELIX 3 AA3 SER A 371 LEU A 378 1 8 HELIX 4 AA4 THR A 389 GLN A 401 1 13 HELIX 5 AA5 ASN A 421 PHE A 426 1 6 HELIX 6 AA6 LEU A 427 GLY A 431 5 5 HELIX 7 AA7 PRO A 441 GLN A 443 5 3 HELIX 8 AA8 ASN A 444 GLY A 452 1 9 HELIX 9 AA9 SER A 481 ILE A 486 1 6 HELIX 10 AB1 LYS A 552 ASN A 554 5 3 HELIX 11 AB2 MET A 566 GLN A 570 5 5 HELIX 12 AB3 GLU B 317 MET B 328 1 12 HELIX 13 AB4 SER B 334 LEU B 356 1 23 HELIX 14 AB5 PRO B 370 ALA B 377 1 8 HELIX 15 AB6 THR B 389 LEU B 400 1 12 HELIX 16 AB7 ASN B 421 PHE B 426 1 6 HELIX 17 AB8 LEU B 427 GLY B 431 5 5 HELIX 18 AB9 PRO B 441 GLN B 443 5 3 HELIX 19 AC1 ASN B 444 GLY B 452 1 9 HELIX 20 AC2 SER B 481 ILE B 486 1 6 HELIX 21 AC3 LYS B 552 ASN B 554 5 3 HELIX 22 AC4 GLU C 317 ASN C 329 1 13 HELIX 23 AC5 SER C 334 LEU C 356 1 23 HELIX 24 AC6 SER C 371 LEU C 378 1 8 HELIX 25 AC7 THR C 389 LEU C 400 1 12 HELIX 26 AC8 ARG C 419 PHE C 426 1 8 HELIX 27 AC9 LEU C 427 GLY C 431 5 5 HELIX 28 AD1 PRO C 441 GLN C 443 5 3 HELIX 29 AD2 ASN C 444 ARG C 451 1 8 HELIX 30 AD3 SER C 481 ILE C 486 1 6 HELIX 31 AD4 LYS C 552 ASN C 554 5 3 SHEET 1 AA1 5 CYS A 380 VAL A 385 0 SHEET 2 AA1 5 ASP A 410 ARG A 419 -1 O ILE A 414 N VAL A 385 SHEET 3 AA1 5 VAL A 556 SER A 565 -1 O SER A 565 N ASP A 410 SHEET 4 AA1 5 ARG A 498 ALA A 506 -1 N ASP A 504 O LYS A 557 SHEET 5 AA1 5 VAL A 433 GLY A 439 -1 N LEU A 436 O CYS A 503 SHEET 1 AA2 4 ILE A 476 PHE A 478 0 SHEET 2 AA2 4 GLU A 547 VAL A 550 -1 O VAL A 550 N ILE A 476 SHEET 3 AA2 4 SER A 529 GLY A 532 -1 N GLY A 532 O GLU A 547 SHEET 4 AA2 4 CYS A 510 LEU A 513 1 N LEU A 513 O HIS A 531 SHEET 1 AA3 5 CYS B 380 VAL B 385 0 SHEET 2 AA3 5 ASP B 410 ARG B 419 -1 O ARG B 416 N GLU B 383 SHEET 3 AA3 5 VAL B 556 SER B 565 -1 O SER B 565 N ASP B 410 SHEET 4 AA3 5 ARG B 498 ALA B 506 -1 N ARG B 498 O PHE B 564 SHEET 5 AA3 5 VAL B 433 GLY B 439 -1 N ARG B 434 O VAL B 505 SHEET 1 AA4 4 ILE B 476 PHE B 478 0 SHEET 2 AA4 4 GLU B 547 VAL B 550 -1 O VAL B 550 N ILE B 476 SHEET 3 AA4 4 SER B 529 GLY B 532 -1 N GLY B 532 O GLU B 547 SHEET 4 AA4 4 CYS B 510 LEU B 513 1 N LEU B 513 O HIS B 531 SHEET 1 AA5 5 LYS C 381 HIS C 384 0 SHEET 2 AA5 5 ASP C 410 GLY C 418 -1 O GLY C 418 N LYS C 381 SHEET 3 AA5 5 VAL C 556 SER C 565 -1 O LYS C 559 N VAL C 417 SHEET 4 AA5 5 ARG C 498 ALA C 506 -1 N LEU C 500 O ILE C 562 SHEET 5 AA5 5 VAL C 433 GLY C 439 -1 N LEU C 436 O CYS C 503 SHEET 1 AA6 4 ILE C 476 PHE C 478 0 SHEET 2 AA6 4 GLU C 547 VAL C 550 -1 O VAL C 550 N ILE C 476 SHEET 3 AA6 4 SER C 529 GLY C 532 -1 N GLY C 532 O GLU C 547 SHEET 4 AA6 4 CYS C 510 LEU C 513 1 N MET C 511 O SER C 529 CRYST1 116.904 151.699 104.601 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008554 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006592 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009560 0.00000