data_8SX6 # _entry.id 8SX6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8SX6 pdb_00008sx6 10.2210/pdb8sx6/pdb WWPDB D_1000274632 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-05-31 2 'Structure model' 1 1 2023-10-25 3 'Structure model' 1 2 2023-12-13 4 'Structure model' 2 0 2024-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Refinement description' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Non-polymer description' 8 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' pdbx_initial_refinement_model 4 3 'Structure model' citation 5 3 'Structure model' citation_author 6 4 'Structure model' atom_site 7 4 'Structure model' chem_comp 8 4 'Structure model' chem_comp_atom 9 4 'Structure model' chem_comp_bond 10 4 'Structure model' pdbx_entity_nonpoly 11 4 'Structure model' pdbx_entry_details 12 4 'Structure model' pdbx_nonpoly_scheme # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_initial_refinement_model.details' 2 3 'Structure model' '_citation.country' 3 3 'Structure model' '_citation.journal_abbrev' 4 3 'Structure model' '_citation.journal_id_CSD' 5 3 'Structure model' '_citation.journal_id_ISSN' 6 3 'Structure model' '_citation.journal_volume' 7 3 'Structure model' '_citation.page_first' 8 3 'Structure model' '_citation.page_last' 9 3 'Structure model' '_citation.pdbx_database_id_DOI' 10 3 'Structure model' '_citation.pdbx_database_id_PubMed' 11 3 'Structure model' '_citation.title' 12 3 'Structure model' '_citation.year' 13 4 'Structure model' '_atom_site.B_iso_or_equiv' 14 4 'Structure model' '_atom_site.Cartn_x' 15 4 'Structure model' '_atom_site.Cartn_y' 16 4 'Structure model' '_atom_site.Cartn_z' 17 4 'Structure model' '_atom_site.auth_atom_id' 18 4 'Structure model' '_atom_site.auth_comp_id' 19 4 'Structure model' '_atom_site.label_atom_id' 20 4 'Structure model' '_atom_site.label_comp_id' 21 4 'Structure model' '_atom_site.type_symbol' 22 4 'Structure model' '_chem_comp.formula' 23 4 'Structure model' '_chem_comp.formula_weight' 24 4 'Structure model' '_chem_comp.id' 25 4 'Structure model' '_chem_comp.mon_nstd_flag' 26 4 'Structure model' '_chem_comp.name' 27 4 'Structure model' '_chem_comp.type' 28 4 'Structure model' '_pdbx_entity_nonpoly.comp_id' 29 4 'Structure model' '_pdbx_entry_details.has_protein_modification' 30 4 'Structure model' '_pdbx_nonpoly_scheme.auth_seq_num' 31 4 'Structure model' '_pdbx_nonpoly_scheme.mon_id' 32 4 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8SX6 _pdbx_database_status.recvd_initial_deposition_date 2023-05-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email wz15@iu.edu _pdbx_contact_author.name_first Wen _pdbx_contact_author.name_last Zhang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4811-4384 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, W.' 1 0000-0003-4811-4384 'Dantsu, Y.' 2 0000-0001-6774-8724 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Rsc Chem Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2633-0679 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 4 _citation.language ? _citation.page_first 942 _citation.page_last 951 _citation.title 'Insight into the structures of unusual base pairs in RNA complexes containing a primer/template/adenosine ligand.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/d3cb00137g _citation.pdbx_database_id_PubMed 37920395 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dantsu, Y.' 1 0000-0001-6774-8724 primary 'Zhang, Y.' 2 ? primary 'Zhang, W.' 3 0000-0003-4811-4384 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*(TLN)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') ; 4513.789 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 non-polymer syn "GUANOSINE-5'-MONOPHOSPHATE" 363.221 2 ? ? ? ? 4 non-polymer syn 'ADENOSINE MONOPHOSPHATE' 347.221 1 ? ? ? ? 5 water nat water 18.015 69 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(TLN)(LCC)(LCC)(LCG)ACUUAAGUCG' _entity_poly.pdbx_seq_one_letter_code_can UNNGACUUAAGUCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "GUANOSINE-5'-MONOPHOSPHATE" 5GP 4 'ADENOSINE MONOPHOSPHATE' AMP 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TLN n 1 2 LCC n 1 3 LCC n 1 4 LCG n 1 5 A n 1 6 C n 1 7 U n 1 8 U n 1 9 A n 1 10 A n 1 11 G n 1 12 U n 1 13 C n 1 14 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 14 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5GP non-polymer . "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 AMP non-polymer . 'ADENOSINE MONOPHOSPHATE' ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 LCC 'RNA linking' . '[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H16 N3 O8 P' 349.234 LCG 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H14 N5 O8 P' 375.231 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 TLN 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(THYMIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H15 N2 O9 P' 350.219 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TLN 1 1 1 TLN TLN A . n A 1 2 LCC 2 2 2 LCC LCC A . n A 1 3 LCC 3 3 3 LCC LCC A . n A 1 4 LCG 4 4 4 LCG LCG A . n A 1 5 A 5 5 5 A A A . n A 1 6 C 6 6 6 C C A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 G 14 14 14 G G A . n B 1 1 TLN 1 1 1 TLN TLN B . n B 1 2 LCC 2 2 2 LCC LCC B . n B 1 3 LCC 3 3 3 LCC LCC B . n B 1 4 LCG 4 4 4 LCG LCG B . n B 1 5 A 5 5 5 A A B . n B 1 6 C 6 6 6 C C B . n B 1 7 U 7 7 7 U U B . n B 1 8 U 8 8 8 U U B . n B 1 9 A 9 9 9 A A B . n B 1 10 A 10 10 10 A A B . n B 1 11 G 11 11 11 G G B . n B 1 12 U 12 12 12 U U B . n B 1 13 C 13 13 13 C C B . n B 1 14 G 14 14 14 G G B . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 LCC ? ? LCC ? ? 'SUBJECT OF INVESTIGATION' ? 2 LCG ? ? LCG ? ? 'SUBJECT OF INVESTIGATION' ? 3 TLN ? ? TLN ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 101 2 MG MG A . D 3 5GP 1 101 101 5GP G B . E 4 AMP 1 102 101 AMP A B . F 3 5GP 1 103 102 5GP G B . G 2 MG 1 104 1 MG MG B . H 5 HOH 1 201 14 HOH HOH A . H 5 HOH 2 202 69 HOH HOH A . H 5 HOH 3 203 27 HOH HOH A . H 5 HOH 4 204 58 HOH HOH A . H 5 HOH 5 205 72 HOH HOH A . H 5 HOH 6 206 73 HOH HOH A . H 5 HOH 7 207 10 HOH HOH A . H 5 HOH 8 208 40 HOH HOH A . H 5 HOH 9 209 24 HOH HOH A . H 5 HOH 10 210 45 HOH HOH A . H 5 HOH 11 211 37 HOH HOH A . H 5 HOH 12 212 2 HOH HOH A . H 5 HOH 13 213 50 HOH HOH A . H 5 HOH 14 214 36 HOH HOH A . H 5 HOH 15 215 61 HOH HOH A . H 5 HOH 16 216 18 HOH HOH A . H 5 HOH 17 217 51 HOH HOH A . H 5 HOH 18 218 7 HOH HOH A . H 5 HOH 19 219 52 HOH HOH A . H 5 HOH 20 220 19 HOH HOH A . H 5 HOH 21 221 15 HOH HOH A . H 5 HOH 22 222 26 HOH HOH A . H 5 HOH 23 223 25 HOH HOH A . H 5 HOH 24 224 39 HOH HOH A . H 5 HOH 25 225 11 HOH HOH A . H 5 HOH 26 226 1 HOH HOH A . H 5 HOH 27 227 68 HOH HOH A . H 5 HOH 28 228 17 HOH HOH A . H 5 HOH 29 229 53 HOH HOH A . H 5 HOH 30 230 23 HOH HOH A . H 5 HOH 31 231 9 HOH HOH A . H 5 HOH 32 232 33 HOH HOH A . H 5 HOH 33 233 38 HOH HOH A . H 5 HOH 34 234 6 HOH HOH A . H 5 HOH 35 235 22 HOH HOH A . H 5 HOH 36 236 56 HOH HOH A . I 5 HOH 1 201 28 HOH HOH B . I 5 HOH 2 202 48 HOH HOH B . I 5 HOH 3 203 20 HOH HOH B . I 5 HOH 4 204 29 HOH HOH B . I 5 HOH 5 205 35 HOH HOH B . I 5 HOH 6 206 43 HOH HOH B . I 5 HOH 7 207 57 HOH HOH B . I 5 HOH 8 208 21 HOH HOH B . I 5 HOH 9 209 60 HOH HOH B . I 5 HOH 10 210 62 HOH HOH B . I 5 HOH 11 211 31 HOH HOH B . I 5 HOH 12 212 49 HOH HOH B . I 5 HOH 13 213 42 HOH HOH B . I 5 HOH 14 214 5 HOH HOH B . I 5 HOH 15 215 66 HOH HOH B . I 5 HOH 16 216 30 HOH HOH B . I 5 HOH 17 217 71 HOH HOH B . I 5 HOH 18 218 16 HOH HOH B . I 5 HOH 19 219 44 HOH HOH B . I 5 HOH 20 220 4 HOH HOH B . I 5 HOH 21 221 13 HOH HOH B . I 5 HOH 22 222 47 HOH HOH B . I 5 HOH 23 223 67 HOH HOH B . I 5 HOH 24 224 41 HOH HOH B . I 5 HOH 25 225 64 HOH HOH B . I 5 HOH 26 226 34 HOH HOH B . I 5 HOH 27 227 63 HOH HOH B . I 5 HOH 28 228 8 HOH HOH B . I 5 HOH 29 229 3 HOH HOH B . I 5 HOH 30 230 54 HOH HOH B . I 5 HOH 31 231 59 HOH HOH B . I 5 HOH 32 232 12 HOH HOH B . I 5 HOH 33 233 32 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0267 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 8SX6 _cell.details ? _cell.formula_units_Z ? _cell.length_a 43.526 _cell.length_a_esd ? _cell.length_b 43.526 _cell.length_b_esd ? _cell.length_c 80.139 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8SX6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8SX6 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.5 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;10% v/v MPD, 0.040 M sodium cacodylate trihydrate, pH 7.0, 0.012 M Spermine tetrahydrochloride, 0.08 M sodium chloride, 0.012 M potassium chloride, 0.02 M magnesium chloride hexahydrate ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 291 # _diffrn.ambient_environment ? _diffrn.ambient_temp 99 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MAR CCD 130 mm' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-03-14 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.987 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.987 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8SX6 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.45 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 15931 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.7 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 121.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.965 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.129 _reflns.pdbx_Rpim_I_all 0.042 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.978 _reflns.pdbx_CC_star 0.994 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.122 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.45 _reflns_shell.d_res_low 1.5 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 7.9 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1584 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 10.8 _reflns_shell.pdbx_chi_squared 0.978 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.558 _reflns_shell.pdbx_Rpim_I_all 0.169 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.972 _reflns_shell.pdbx_CC_star 0.993 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.531 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[2][3] -0.00 _refine.aniso_B[3][3] -0.00 _refine.B_iso_max ? _refine.B_iso_mean 27.869 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.955 _refine.correlation_coeff_Fo_to_Fc_free 0.940 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8SX6 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.45 _refine.ls_d_res_low 26.73 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 15101 _refine.ls_number_reflns_R_free 789 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.21 _refine.ls_percent_reflns_R_free 5.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.22118 _refine.ls_R_factor_R_free 0.24181 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.22012 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 6C8N' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.081 _refine.pdbx_overall_ESU_R_Free 0.079 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 1.235 _refine.overall_SU_ML 0.048 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.details ? _refine_hist.d_res_high 1.45 _refine_hist.d_res_low 26.73 _refine_hist.number_atoms_solvent 69 _refine_hist.number_atoms_total 740 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 598 _refine_hist.pdbx_number_atoms_ligand 73 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.028 0.022 745 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.026 0.026 348 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 3.611 2.499 1154 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 4.045 3.445 810 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.172 0.200 137 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.020 0.021 369 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.023 118 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 2.663 2.836 741 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.577 2.816 737 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 3.860 4.243 1149 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 4.820 28.358 1079 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 4.857 28.257 1069 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.451 _refine_ls_shell.d_res_low 1.488 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.number_reflns_R_work 1093 _refine_ls_shell.percent_reflns_obs 99.65 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.235 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.253 # _struct.entry_id 8SX6 _struct.title 'RNA duplex bound with GMP and AMP monomers' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8SX6 _struct_keywords.text 'RNA, GMP, AMP' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 3 ? G N N 2 ? H N N 5 ? I N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8SX6 _struct_ref.pdbx_db_accession 8SX6 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8SX6 A 1 ? 14 ? 8SX6 1 ? 14 ? 1 14 2 1 8SX6 B 1 ? 14 ? 8SX6 1 ? 14 ? 1 14 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3520 ? 1 MORE 4 ? 1 'SSA (A^2)' 5720 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A TLN 1 "O3'" ? ? ? 1_555 A LCC 2 P ? ? A TLN 1 A LCC 2 1_555 ? ? ? ? ? ? ? 1.674 ? ? covale2 covale both ? A LCC 2 "O3'" ? ? ? 1_555 A LCC 3 P ? ? A LCC 2 A LCC 3 1_555 ? ? ? ? ? ? ? 1.570 ? ? covale3 covale both ? A LCC 3 "O3'" ? ? ? 1_555 A LCG 4 P ? ? A LCC 3 A LCG 4 1_555 ? ? ? ? ? ? ? 1.547 ? ? covale4 covale both ? A LCG 4 "O3'" ? ? ? 1_555 A A 5 P ? ? A LCG 4 A A 5 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale5 covale both ? B TLN 1 "O3'" ? ? ? 1_555 B LCC 2 P ? ? B TLN 1 B LCC 2 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale6 covale both ? B LCC 2 "O3'" ? ? ? 1_555 B LCC 3 P ? ? B LCC 2 B LCC 3 1_555 ? ? ? ? ? ? ? 1.626 ? ? covale7 covale both ? B LCC 3 "O3'" ? ? ? 1_555 B LCG 4 P ? ? B LCC 3 B LCG 4 1_555 ? ? ? ? ? ? ? 1.582 ? ? covale8 covale both ? B LCG 4 "O3'" ? ? ? 1_555 B A 5 P ? ? B LCG 4 B A 5 1_555 ? ? ? ? ? ? ? 1.618 ? ? metalc1 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 101 A HOH 201 3_685 ? ? ? ? ? ? ? 2.107 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 101 A HOH 221 3_685 ? ? ? ? ? ? ? 2.035 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 101 A HOH 225 3_685 ? ? ? ? ? ? ? 2.047 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 101 B HOH 218 3_685 ? ? ? ? ? ? ? 2.019 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 101 B HOH 221 3_685 ? ? ? ? ? ? ? 2.071 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 101 B HOH 232 3_685 ? ? ? ? ? ? ? 1.916 ? ? metalc7 metalc ? ? H HOH . O ? ? ? 1_555 G MG . MG ? ? A HOH 218 B MG 104 1_555 ? ? ? ? ? ? ? 2.071 ? ? metalc8 metalc ? ? H HOH . O ? ? ? 1_555 G MG . MG ? ? A HOH 231 B MG 104 1_555 ? ? ? ? ? ? ? 2.030 ? ? metalc9 metalc ? ? H HOH . O ? ? ? 1_555 G MG . MG ? ? A HOH 234 B MG 104 1_555 ? ? ? ? ? ? ? 1.985 ? ? metalc10 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 104 B HOH 203 1_555 ? ? ? ? ? ? ? 2.023 ? ? metalc11 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 104 B HOH 214 1_555 ? ? ? ? ? ? ? 2.116 ? ? metalc12 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 104 B HOH 228 1_555 ? ? ? ? ? ? ? 2.075 ? ? hydrog1 hydrog ? ? A LCG 4 N1 ? ? ? 1_555 B C 13 N3 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A LCG 4 N2 ? ? ? 1_555 B C 13 O2 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A LCG 4 O6 ? ? ? 1_555 B C 13 N4 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 12 N3 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 12 O4 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 9 N1 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 9 N6 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 9 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 9 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 11 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 11 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 11 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 N3 ? ? ? 1_555 B LCG 4 N1 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 13 N4 ? ? ? 1_555 B LCG 4 O6 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 13 O2 ? ? ? 1_555 B LCG 4 N2 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? H HOH . ? A HOH 201 ? 3_685 MG ? C MG . ? A MG 101 ? 1_555 O ? H HOH . ? A HOH 221 ? 3_685 92.0 ? 2 O ? H HOH . ? A HOH 201 ? 3_685 MG ? C MG . ? A MG 101 ? 1_555 O ? H HOH . ? A HOH 225 ? 3_685 92.2 ? 3 O ? H HOH . ? A HOH 221 ? 3_685 MG ? C MG . ? A MG 101 ? 1_555 O ? H HOH . ? A HOH 225 ? 3_685 87.0 ? 4 O ? H HOH . ? A HOH 201 ? 3_685 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? B HOH 218 ? 3_685 88.9 ? 5 O ? H HOH . ? A HOH 221 ? 3_685 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? B HOH 218 ? 3_685 178.2 ? 6 O ? H HOH . ? A HOH 225 ? 3_685 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? B HOH 218 ? 3_685 91.4 ? 7 O ? H HOH . ? A HOH 201 ? 3_685 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? B HOH 221 ? 3_685 84.2 ? 8 O ? H HOH . ? A HOH 221 ? 3_685 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? B HOH 221 ? 3_685 88.3 ? 9 O ? H HOH . ? A HOH 225 ? 3_685 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? B HOH 221 ? 3_685 173.9 ? 10 O ? I HOH . ? B HOH 218 ? 3_685 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? B HOH 221 ? 3_685 93.4 ? 11 O ? H HOH . ? A HOH 201 ? 3_685 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? B HOH 232 ? 3_685 173.9 ? 12 O ? H HOH . ? A HOH 221 ? 3_685 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? B HOH 232 ? 3_685 88.8 ? 13 O ? H HOH . ? A HOH 225 ? 3_685 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? B HOH 232 ? 3_685 93.9 ? 14 O ? I HOH . ? B HOH 218 ? 3_685 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? B HOH 232 ? 3_685 90.5 ? 15 O ? I HOH . ? B HOH 221 ? 3_685 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? B HOH 232 ? 3_685 89.8 ? 16 O ? H HOH . ? A HOH 218 ? 1_555 MG ? G MG . ? B MG 104 ? 1_555 O ? H HOH . ? A HOH 231 ? 1_555 91.9 ? 17 O ? H HOH . ? A HOH 218 ? 1_555 MG ? G MG . ? B MG 104 ? 1_555 O ? H HOH . ? A HOH 234 ? 1_555 90.8 ? 18 O ? H HOH . ? A HOH 231 ? 1_555 MG ? G MG . ? B MG 104 ? 1_555 O ? H HOH . ? A HOH 234 ? 1_555 92.0 ? 19 O ? H HOH . ? A HOH 218 ? 1_555 MG ? G MG . ? B MG 104 ? 1_555 O ? I HOH . ? B HOH 203 ? 1_555 84.2 ? 20 O ? H HOH . ? A HOH 231 ? 1_555 MG ? G MG . ? B MG 104 ? 1_555 O ? I HOH . ? B HOH 203 ? 1_555 84.0 ? 21 O ? H HOH . ? A HOH 234 ? 1_555 MG ? G MG . ? B MG 104 ? 1_555 O ? I HOH . ? B HOH 203 ? 1_555 173.5 ? 22 O ? H HOH . ? A HOH 218 ? 1_555 MG ? G MG . ? B MG 104 ? 1_555 O ? I HOH . ? B HOH 214 ? 1_555 89.1 ? 23 O ? H HOH . ? A HOH 231 ? 1_555 MG ? G MG . ? B MG 104 ? 1_555 O ? I HOH . ? B HOH 214 ? 1_555 178.6 ? 24 O ? H HOH . ? A HOH 234 ? 1_555 MG ? G MG . ? B MG 104 ? 1_555 O ? I HOH . ? B HOH 214 ? 1_555 88.9 ? 25 O ? I HOH . ? B HOH 203 ? 1_555 MG ? G MG . ? B MG 104 ? 1_555 O ? I HOH . ? B HOH 214 ? 1_555 95.2 ? 26 O ? H HOH . ? A HOH 218 ? 1_555 MG ? G MG . ? B MG 104 ? 1_555 O ? I HOH . ? B HOH 228 ? 1_555 175.8 ? 27 O ? H HOH . ? A HOH 231 ? 1_555 MG ? G MG . ? B MG 104 ? 1_555 O ? I HOH . ? B HOH 228 ? 1_555 90.5 ? 28 O ? H HOH . ? A HOH 234 ? 1_555 MG ? G MG . ? B MG 104 ? 1_555 O ? I HOH . ? B HOH 228 ? 1_555 92.5 ? 29 O ? I HOH . ? B HOH 203 ? 1_555 MG ? G MG . ? B MG 104 ? 1_555 O ? I HOH . ? B HOH 228 ? 1_555 92.6 ? 30 O ? I HOH . ? B HOH 214 ? 1_555 MG ? G MG . ? B MG 104 ? 1_555 O ? I HOH . ? B HOH 228 ? 1_555 88.4 ? # _pdbx_entry_details.entry_id 8SX6 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 217 ? H HOH . 2 1 A HOH 219 ? H HOH . 3 1 A HOH 236 ? H HOH . 4 1 B HOH 205 ? I HOH . 5 1 B HOH 212 ? I HOH . 6 1 B HOH 230 ? I HOH . # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 236 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 10.16 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5GP P P N N 1 5GP O1P O N N 2 5GP O2P O N N 3 5GP O3P O N N 4 5GP "O5'" O N N 5 5GP "C5'" C N N 6 5GP "C4'" C N R 7 5GP "O4'" O N N 8 5GP "C3'" C N S 9 5GP "O3'" O N N 10 5GP "C2'" C N R 11 5GP "O2'" O N N 12 5GP "C1'" C N R 13 5GP N9 N Y N 14 5GP C8 C Y N 15 5GP N7 N Y N 16 5GP C5 C Y N 17 5GP C6 C N N 18 5GP O6 O N N 19 5GP N1 N N N 20 5GP C2 C N N 21 5GP N2 N N N 22 5GP N3 N N N 23 5GP C4 C Y N 24 5GP HOP2 H N N 25 5GP HOP3 H N N 26 5GP "H5'1" H N N 27 5GP "H5'2" H N N 28 5GP "H4'" H N N 29 5GP "H3'" H N N 30 5GP "HO3'" H N N 31 5GP "H2'" H N N 32 5GP "HO2'" H N N 33 5GP "H1'" H N N 34 5GP H8 H N N 35 5GP HN1 H N N 36 5GP HN21 H N N 37 5GP HN22 H N N 38 A OP3 O N N 39 A P P N N 40 A OP1 O N N 41 A OP2 O N N 42 A "O5'" O N N 43 A "C5'" C N N 44 A "C4'" C N R 45 A "O4'" O N N 46 A "C3'" C N S 47 A "O3'" O N N 48 A "C2'" C N R 49 A "O2'" O N N 50 A "C1'" C N R 51 A N9 N Y N 52 A C8 C Y N 53 A N7 N Y N 54 A C5 C Y N 55 A C6 C Y N 56 A N6 N N N 57 A N1 N Y N 58 A C2 C Y N 59 A N3 N Y N 60 A C4 C Y N 61 A HOP3 H N N 62 A HOP2 H N N 63 A "H5'" H N N 64 A "H5''" H N N 65 A "H4'" H N N 66 A "H3'" H N N 67 A "HO3'" H N N 68 A "H2'" H N N 69 A "HO2'" H N N 70 A "H1'" H N N 71 A H8 H N N 72 A H61 H N N 73 A H62 H N N 74 A H2 H N N 75 AMP P P N N 76 AMP O1P O N N 77 AMP O2P O N N 78 AMP O3P O N N 79 AMP "O5'" O N N 80 AMP "C5'" C N N 81 AMP "C4'" C N R 82 AMP "O4'" O N N 83 AMP "C3'" C N S 84 AMP "O3'" O N N 85 AMP "C2'" C N R 86 AMP "O2'" O N N 87 AMP "C1'" C N R 88 AMP N9 N Y N 89 AMP C8 C Y N 90 AMP N7 N Y N 91 AMP C5 C Y N 92 AMP C6 C Y N 93 AMP N6 N N N 94 AMP N1 N Y N 95 AMP C2 C Y N 96 AMP N3 N Y N 97 AMP C4 C Y N 98 AMP HOP2 H N N 99 AMP HOP3 H N N 100 AMP "H5'1" H N N 101 AMP "H5'2" H N N 102 AMP "H4'" H N N 103 AMP "H3'" H N N 104 AMP "HO3'" H N N 105 AMP "H2'" H N N 106 AMP "HO2'" H N N 107 AMP "H1'" H N N 108 AMP H8 H N N 109 AMP HN61 H N N 110 AMP HN62 H N N 111 AMP H2 H N N 112 C OP3 O N N 113 C P P N N 114 C OP1 O N N 115 C OP2 O N N 116 C "O5'" O N N 117 C "C5'" C N N 118 C "C4'" C N R 119 C "O4'" O N N 120 C "C3'" C N S 121 C "O3'" O N N 122 C "C2'" C N R 123 C "O2'" O N N 124 C "C1'" C N R 125 C N1 N N N 126 C C2 C N N 127 C O2 O N N 128 C N3 N N N 129 C C4 C N N 130 C N4 N N N 131 C C5 C N N 132 C C6 C N N 133 C HOP3 H N N 134 C HOP2 H N N 135 C "H5'" H N N 136 C "H5''" H N N 137 C "H4'" H N N 138 C "H3'" H N N 139 C "HO3'" H N N 140 C "H2'" H N N 141 C "HO2'" H N N 142 C "H1'" H N N 143 C H41 H N N 144 C H42 H N N 145 C H5 H N N 146 C H6 H N N 147 G OP3 O N N 148 G P P N N 149 G OP1 O N N 150 G OP2 O N N 151 G "O5'" O N N 152 G "C5'" C N N 153 G "C4'" C N R 154 G "O4'" O N N 155 G "C3'" C N S 156 G "O3'" O N N 157 G "C2'" C N R 158 G "O2'" O N N 159 G "C1'" C N R 160 G N9 N Y N 161 G C8 C Y N 162 G N7 N Y N 163 G C5 C Y N 164 G C6 C N N 165 G O6 O N N 166 G N1 N N N 167 G C2 C N N 168 G N2 N N N 169 G N3 N N N 170 G C4 C Y N 171 G HOP3 H N N 172 G HOP2 H N N 173 G "H5'" H N N 174 G "H5''" H N N 175 G "H4'" H N N 176 G "H3'" H N N 177 G "HO3'" H N N 178 G "H2'" H N N 179 G "HO2'" H N N 180 G "H1'" H N N 181 G H8 H N N 182 G H1 H N N 183 G H21 H N N 184 G H22 H N N 185 HOH O O N N 186 HOH H1 H N N 187 HOH H2 H N N 188 LCC "O5'" O N N 189 LCC "C5'" C N N 190 LCC "C4'" C N R 191 LCC "O4'" O N N 192 LCC "C1'" C N R 193 LCC N1 N N N 194 LCC C6 C N N 195 LCC C5 C N N 196 LCC C5M C N N 197 LCC C4 C N N 198 LCC N4 N N N 199 LCC N3 N N N 200 LCC C2 C N N 201 LCC O2 O N N 202 LCC "C3'" C N S 203 LCC "C2'" C N R 204 LCC "O2'" O N N 205 LCC "O3'" O N N 206 LCC "C6'" C N N 207 LCC P P N N 208 LCC O1P O N N 209 LCC O2P O N N 210 LCC OXT O N N 211 LCC "H5'1" H N N 212 LCC "H5'2" H N N 213 LCC "H1'" H N N 214 LCC H6 H N N 215 LCC H5M1 H N N 216 LCC H5M2 H N N 217 LCC H5M3 H N N 218 LCC H41 H N N 219 LCC H42 H N N 220 LCC "H3'" H N N 221 LCC "H2'1" H N N 222 LCC H3T H N N 223 LCC "H6'1" H N N 224 LCC "H6'2" H N N 225 LCC H1P H N N 226 LCC HXT H N N 227 LCG P P N N 228 LCG OP1 O N N 229 LCG "O5'" O N N 230 LCG "C5'" C N N 231 LCG "C3'" C N S 232 LCG "C6'" C N N 233 LCG N9 N Y N 234 LCG C8 C Y N 235 LCG C4 C Y N 236 LCG N7 N Y N 237 LCG C5 C Y N 238 LCG C6 C N N 239 LCG "C2'" C N R 240 LCG O6 O N N 241 LCG "C4'" C N R 242 LCG "C1'" C N R 243 LCG C2 C N N 244 LCG N1 N N N 245 LCG "O4'" O N N 246 LCG OP2 O N N 247 LCG N2 N N N 248 LCG N3 N N N 249 LCG "O2'" O N N 250 LCG "O3'" O N N 251 LCG OP3 O N N 252 LCG "H5'" H N N 253 LCG "H5''" H N N 254 LCG "H3'" H N N 255 LCG "H6'1" H N N 256 LCG "H6'2" H N N 257 LCG H8 H N N 258 LCG "H2'" H N N 259 LCG "H1'" H N N 260 LCG H1 H N N 261 LCG HOP2 H N N 262 LCG H21 H N N 263 LCG H22 H N N 264 LCG "HO3'" H N N 265 LCG HOP3 H N N 266 MG MG MG N N 267 TLN P P N N 268 TLN OP1 O N N 269 TLN OP2 O N N 270 TLN OP3 O N N 271 TLN "O5'" O N N 272 TLN "C5'" C N N 273 TLN "C4'" C N R 274 TLN "O4'" O N N 275 TLN "C1'" C N R 276 TLN N1 N N N 277 TLN C6 C N N 278 TLN C5 C N N 279 TLN C5M C N N 280 TLN C4 C N N 281 TLN O4 O N N 282 TLN N3 N N N 283 TLN C2 C N N 284 TLN O2 O N N 285 TLN "C3'" C N S 286 TLN "C2'" C N R 287 TLN "O2'" O N N 288 TLN "O3'" O N N 289 TLN "C6'" C N N 290 TLN HOP2 H N N 291 TLN HOP3 H N N 292 TLN "H5'" H N N 293 TLN "H5''" H N N 294 TLN "H1'" H N N 295 TLN H6 H N N 296 TLN H71 H N N 297 TLN H72 H N N 298 TLN H73 H N N 299 TLN H3 H N N 300 TLN "H3'" H N N 301 TLN "H2'" H N N 302 TLN "HO3'" H N N 303 TLN "H6'1" H N N 304 TLN "H6'2" H N N 305 U OP3 O N N 306 U P P N N 307 U OP1 O N N 308 U OP2 O N N 309 U "O5'" O N N 310 U "C5'" C N N 311 U "C4'" C N R 312 U "O4'" O N N 313 U "C3'" C N S 314 U "O3'" O N N 315 U "C2'" C N R 316 U "O2'" O N N 317 U "C1'" C N R 318 U N1 N N N 319 U C2 C N N 320 U O2 O N N 321 U N3 N N N 322 U C4 C N N 323 U O4 O N N 324 U C5 C N N 325 U C6 C N N 326 U HOP3 H N N 327 U HOP2 H N N 328 U "H5'" H N N 329 U "H5''" H N N 330 U "H4'" H N N 331 U "H3'" H N N 332 U "HO3'" H N N 333 U "H2'" H N N 334 U "HO2'" H N N 335 U "H1'" H N N 336 U H3 H N N 337 U H5 H N N 338 U H6 H N N 339 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5GP P O1P doub N N 1 5GP P O2P sing N N 2 5GP P O3P sing N N 3 5GP P "O5'" sing N N 4 5GP O2P HOP2 sing N N 5 5GP O3P HOP3 sing N N 6 5GP "O5'" "C5'" sing N N 7 5GP "C5'" "C4'" sing N N 8 5GP "C5'" "H5'1" sing N N 9 5GP "C5'" "H5'2" sing N N 10 5GP "C4'" "O4'" sing N N 11 5GP "C4'" "C3'" sing N N 12 5GP "C4'" "H4'" sing N N 13 5GP "O4'" "C1'" sing N N 14 5GP "C3'" "O3'" sing N N 15 5GP "C3'" "C2'" sing N N 16 5GP "C3'" "H3'" sing N N 17 5GP "O3'" "HO3'" sing N N 18 5GP "C2'" "O2'" sing N N 19 5GP "C2'" "C1'" sing N N 20 5GP "C2'" "H2'" sing N N 21 5GP "O2'" "HO2'" sing N N 22 5GP "C1'" N9 sing N N 23 5GP "C1'" "H1'" sing N N 24 5GP N9 C8 sing Y N 25 5GP N9 C4 sing Y N 26 5GP C8 N7 doub Y N 27 5GP C8 H8 sing N N 28 5GP N7 C5 sing Y N 29 5GP C5 C6 sing N N 30 5GP C5 C4 doub Y N 31 5GP C6 O6 doub N N 32 5GP C6 N1 sing N N 33 5GP N1 C2 sing N N 34 5GP N1 HN1 sing N N 35 5GP C2 N2 sing N N 36 5GP C2 N3 doub N N 37 5GP N2 HN21 sing N N 38 5GP N2 HN22 sing N N 39 5GP N3 C4 sing N N 40 A OP3 P sing N N 41 A OP3 HOP3 sing N N 42 A P OP1 doub N N 43 A P OP2 sing N N 44 A P "O5'" sing N N 45 A OP2 HOP2 sing N N 46 A "O5'" "C5'" sing N N 47 A "C5'" "C4'" sing N N 48 A "C5'" "H5'" sing N N 49 A "C5'" "H5''" sing N N 50 A "C4'" "O4'" sing N N 51 A "C4'" "C3'" sing N N 52 A "C4'" "H4'" sing N N 53 A "O4'" "C1'" sing N N 54 A "C3'" "O3'" sing N N 55 A "C3'" "C2'" sing N N 56 A "C3'" "H3'" sing N N 57 A "O3'" "HO3'" sing N N 58 A "C2'" "O2'" sing N N 59 A "C2'" "C1'" sing N N 60 A "C2'" "H2'" sing N N 61 A "O2'" "HO2'" sing N N 62 A "C1'" N9 sing N N 63 A "C1'" "H1'" sing N N 64 A N9 C8 sing Y N 65 A N9 C4 sing Y N 66 A C8 N7 doub Y N 67 A C8 H8 sing N N 68 A N7 C5 sing Y N 69 A C5 C6 sing Y N 70 A C5 C4 doub Y N 71 A C6 N6 sing N N 72 A C6 N1 doub Y N 73 A N6 H61 sing N N 74 A N6 H62 sing N N 75 A N1 C2 sing Y N 76 A C2 N3 doub Y N 77 A C2 H2 sing N N 78 A N3 C4 sing Y N 79 AMP P O1P doub N N 80 AMP P O2P sing N N 81 AMP P O3P sing N N 82 AMP P "O5'" sing N N 83 AMP O2P HOP2 sing N N 84 AMP O3P HOP3 sing N N 85 AMP "O5'" "C5'" sing N N 86 AMP "C5'" "C4'" sing N N 87 AMP "C5'" "H5'1" sing N N 88 AMP "C5'" "H5'2" sing N N 89 AMP "C4'" "O4'" sing N N 90 AMP "C4'" "C3'" sing N N 91 AMP "C4'" "H4'" sing N N 92 AMP "O4'" "C1'" sing N N 93 AMP "C3'" "O3'" sing N N 94 AMP "C3'" "C2'" sing N N 95 AMP "C3'" "H3'" sing N N 96 AMP "O3'" "HO3'" sing N N 97 AMP "C2'" "O2'" sing N N 98 AMP "C2'" "C1'" sing N N 99 AMP "C2'" "H2'" sing N N 100 AMP "O2'" "HO2'" sing N N 101 AMP "C1'" N9 sing N N 102 AMP "C1'" "H1'" sing N N 103 AMP N9 C8 sing Y N 104 AMP N9 C4 sing Y N 105 AMP C8 N7 doub Y N 106 AMP C8 H8 sing N N 107 AMP N7 C5 sing Y N 108 AMP C5 C6 sing Y N 109 AMP C5 C4 doub Y N 110 AMP C6 N6 sing N N 111 AMP C6 N1 doub Y N 112 AMP N6 HN61 sing N N 113 AMP N6 HN62 sing N N 114 AMP N1 C2 sing Y N 115 AMP C2 N3 doub Y N 116 AMP C2 H2 sing N N 117 AMP N3 C4 sing Y N 118 C OP3 P sing N N 119 C OP3 HOP3 sing N N 120 C P OP1 doub N N 121 C P OP2 sing N N 122 C P "O5'" sing N N 123 C OP2 HOP2 sing N N 124 C "O5'" "C5'" sing N N 125 C "C5'" "C4'" sing N N 126 C "C5'" "H5'" sing N N 127 C "C5'" "H5''" sing N N 128 C "C4'" "O4'" sing N N 129 C "C4'" "C3'" sing N N 130 C "C4'" "H4'" sing N N 131 C "O4'" "C1'" sing N N 132 C "C3'" "O3'" sing N N 133 C "C3'" "C2'" sing N N 134 C "C3'" "H3'" sing N N 135 C "O3'" "HO3'" sing N N 136 C "C2'" "O2'" sing N N 137 C "C2'" "C1'" sing N N 138 C "C2'" "H2'" sing N N 139 C "O2'" "HO2'" sing N N 140 C "C1'" N1 sing N N 141 C "C1'" "H1'" sing N N 142 C N1 C2 sing N N 143 C N1 C6 sing N N 144 C C2 O2 doub N N 145 C C2 N3 sing N N 146 C N3 C4 doub N N 147 C C4 N4 sing N N 148 C C4 C5 sing N N 149 C N4 H41 sing N N 150 C N4 H42 sing N N 151 C C5 C6 doub N N 152 C C5 H5 sing N N 153 C C6 H6 sing N N 154 G OP3 P sing N N 155 G OP3 HOP3 sing N N 156 G P OP1 doub N N 157 G P OP2 sing N N 158 G P "O5'" sing N N 159 G OP2 HOP2 sing N N 160 G "O5'" "C5'" sing N N 161 G "C5'" "C4'" sing N N 162 G "C5'" "H5'" sing N N 163 G "C5'" "H5''" sing N N 164 G "C4'" "O4'" sing N N 165 G "C4'" "C3'" sing N N 166 G "C4'" "H4'" sing N N 167 G "O4'" "C1'" sing N N 168 G "C3'" "O3'" sing N N 169 G "C3'" "C2'" sing N N 170 G "C3'" "H3'" sing N N 171 G "O3'" "HO3'" sing N N 172 G "C2'" "O2'" sing N N 173 G "C2'" "C1'" sing N N 174 G "C2'" "H2'" sing N N 175 G "O2'" "HO2'" sing N N 176 G "C1'" N9 sing N N 177 G "C1'" "H1'" sing N N 178 G N9 C8 sing Y N 179 G N9 C4 sing Y N 180 G C8 N7 doub Y N 181 G C8 H8 sing N N 182 G N7 C5 sing Y N 183 G C5 C6 sing N N 184 G C5 C4 doub Y N 185 G C6 O6 doub N N 186 G C6 N1 sing N N 187 G N1 C2 sing N N 188 G N1 H1 sing N N 189 G C2 N2 sing N N 190 G C2 N3 doub N N 191 G N2 H21 sing N N 192 G N2 H22 sing N N 193 G N3 C4 sing N N 194 HOH O H1 sing N N 195 HOH O H2 sing N N 196 LCC "O5'" "C5'" sing N N 197 LCC "O5'" P sing N N 198 LCC "C5'" "C4'" sing N N 199 LCC "C5'" "H5'1" sing N N 200 LCC "C5'" "H5'2" sing N N 201 LCC "C4'" "O4'" sing N N 202 LCC "C4'" "C3'" sing N N 203 LCC "C4'" "C6'" sing N N 204 LCC "O4'" "C1'" sing N N 205 LCC "C1'" N1 sing N N 206 LCC "C1'" "C2'" sing N N 207 LCC "C1'" "H1'" sing N N 208 LCC N1 C6 sing N N 209 LCC N1 C2 sing N N 210 LCC C6 C5 doub N N 211 LCC C6 H6 sing N N 212 LCC C5 C5M sing N N 213 LCC C5 C4 sing N N 214 LCC C5M H5M1 sing N N 215 LCC C5M H5M2 sing N N 216 LCC C5M H5M3 sing N N 217 LCC C4 N4 sing N N 218 LCC C4 N3 doub N N 219 LCC N4 H41 sing N N 220 LCC N4 H42 sing N N 221 LCC N3 C2 sing N N 222 LCC C2 O2 doub N N 223 LCC "C3'" "C2'" sing N N 224 LCC "C3'" "O3'" sing N N 225 LCC "C3'" "H3'" sing N N 226 LCC "C2'" "O2'" sing N N 227 LCC "C2'" "H2'1" sing N N 228 LCC "O2'" "C6'" sing N N 229 LCC "O3'" H3T sing N N 230 LCC "C6'" "H6'1" sing N N 231 LCC "C6'" "H6'2" sing N N 232 LCC P O1P sing N N 233 LCC P O2P doub N N 234 LCC P OXT sing N N 235 LCC O1P H1P sing N N 236 LCC OXT HXT sing N N 237 LCG P OP1 doub N N 238 LCG P "O5'" sing N N 239 LCG P OP2 sing N N 240 LCG P OP3 sing N N 241 LCG "O5'" "C5'" sing N N 242 LCG "C5'" "C4'" sing N N 243 LCG "C5'" "H5'" sing N N 244 LCG "C5'" "H5''" sing N N 245 LCG "C3'" "C2'" sing N N 246 LCG "C3'" "C4'" sing N N 247 LCG "C3'" "O3'" sing N N 248 LCG "C3'" "H3'" sing N N 249 LCG "C6'" "C4'" sing N N 250 LCG "C6'" "O2'" sing N N 251 LCG "C6'" "H6'1" sing N N 252 LCG "C6'" "H6'2" sing N N 253 LCG N9 C8 sing Y N 254 LCG N9 C4 sing Y N 255 LCG N9 "C1'" sing N N 256 LCG C8 N7 doub Y N 257 LCG C8 H8 sing N N 258 LCG C4 C5 doub Y N 259 LCG C4 N3 sing N N 260 LCG N7 C5 sing Y N 261 LCG C5 C6 sing N N 262 LCG C6 O6 doub N N 263 LCG C6 N1 sing N N 264 LCG "C2'" "C1'" sing N N 265 LCG "C2'" "O2'" sing N N 266 LCG "C2'" "H2'" sing N N 267 LCG "C4'" "O4'" sing N N 268 LCG "C1'" "O4'" sing N N 269 LCG "C1'" "H1'" sing N N 270 LCG C2 N1 sing N N 271 LCG C2 N2 sing N N 272 LCG C2 N3 doub N N 273 LCG N1 H1 sing N N 274 LCG OP2 HOP2 sing N N 275 LCG N2 H21 sing N N 276 LCG N2 H22 sing N N 277 LCG "O3'" "HO3'" sing N N 278 LCG OP3 HOP3 sing N N 279 TLN P OP1 doub N N 280 TLN P OP2 sing N N 281 TLN P OP3 sing N N 282 TLN P "O5'" sing N N 283 TLN OP2 HOP2 sing N N 284 TLN OP3 HOP3 sing N N 285 TLN "O5'" "C5'" sing N N 286 TLN "C5'" "C4'" sing N N 287 TLN "C5'" "H5'" sing N N 288 TLN "C5'" "H5''" sing N N 289 TLN "C4'" "O4'" sing N N 290 TLN "C4'" "C3'" sing N N 291 TLN "C4'" "C6'" sing N N 292 TLN "O4'" "C1'" sing N N 293 TLN "C1'" N1 sing N N 294 TLN "C1'" "C2'" sing N N 295 TLN "C1'" "H1'" sing N N 296 TLN N1 C6 sing N N 297 TLN N1 C2 sing N N 298 TLN C6 C5 doub N N 299 TLN C6 H6 sing N N 300 TLN C5 C5M sing N N 301 TLN C5 C4 sing N N 302 TLN C5M H71 sing N N 303 TLN C5M H72 sing N N 304 TLN C5M H73 sing N N 305 TLN C4 O4 doub N N 306 TLN C4 N3 sing N N 307 TLN N3 C2 sing N N 308 TLN N3 H3 sing N N 309 TLN C2 O2 doub N N 310 TLN "C3'" "C2'" sing N N 311 TLN "C3'" "O3'" sing N N 312 TLN "C3'" "H3'" sing N N 313 TLN "C2'" "O2'" sing N N 314 TLN "C2'" "H2'" sing N N 315 TLN "O2'" "C6'" sing N N 316 TLN "O3'" "HO3'" sing N N 317 TLN "C6'" "H6'1" sing N N 318 TLN "C6'" "H6'2" sing N N 319 U OP3 P sing N N 320 U OP3 HOP3 sing N N 321 U P OP1 doub N N 322 U P OP2 sing N N 323 U P "O5'" sing N N 324 U OP2 HOP2 sing N N 325 U "O5'" "C5'" sing N N 326 U "C5'" "C4'" sing N N 327 U "C5'" "H5'" sing N N 328 U "C5'" "H5''" sing N N 329 U "C4'" "O4'" sing N N 330 U "C4'" "C3'" sing N N 331 U "C4'" "H4'" sing N N 332 U "O4'" "C1'" sing N N 333 U "C3'" "O3'" sing N N 334 U "C3'" "C2'" sing N N 335 U "C3'" "H3'" sing N N 336 U "O3'" "HO3'" sing N N 337 U "C2'" "O2'" sing N N 338 U "C2'" "C1'" sing N N 339 U "C2'" "H2'" sing N N 340 U "O2'" "HO2'" sing N N 341 U "C1'" N1 sing N N 342 U "C1'" "H1'" sing N N 343 U N1 C2 sing N N 344 U N1 C6 sing N N 345 U C2 O2 doub N N 346 U C2 N3 sing N N 347 U N3 C4 sing N N 348 U N3 H3 sing N N 349 U C4 O4 doub N N 350 U C4 C5 sing N N 351 U C5 C6 doub N N 352 U C5 H5 sing N N 353 U C6 H6 sing N N 354 # _ndb_struct_conf_na.entry_id 8SX6 _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A LCG 4 1_555 B C 13 1_555 -0.165 -0.183 -0.019 -4.260 -16.113 0.615 1 A_LCG4:C13_B A 4 ? B 13 ? 19 1 1 A A 5 1_555 B U 12 1_555 0.023 -0.147 0.136 2.672 -8.709 -5.350 2 A_A5:U12_B A 5 ? B 12 ? 20 1 1 A C 6 1_555 B G 11 1_555 0.266 -0.178 -0.022 8.209 -15.096 -1.600 3 A_C6:G11_B A 6 ? B 11 ? 19 1 1 A U 7 1_555 B A 10 1_555 -0.152 -0.097 0.019 3.739 -16.485 2.204 4 A_U7:A10_B A 7 ? B 10 ? 20 1 1 A U 8 1_555 B A 9 1_555 0.006 -0.117 -0.050 7.230 -11.562 3.007 5 A_U8:A9_B A 8 ? B 9 ? 20 1 1 A A 9 1_555 B U 8 1_555 -0.052 -0.073 0.077 -4.184 -18.101 6.828 6 A_A9:U8_B A 9 ? B 8 ? 20 1 1 A A 10 1_555 B U 7 1_555 0.112 -0.147 0.055 -4.964 -13.018 0.037 7 A_A10:U7_B A 10 ? B 7 ? 20 1 1 A G 11 1_555 B C 6 1_555 -0.227 -0.188 -0.047 -10.139 -18.862 -1.692 8 A_G11:C6_B A 11 ? B 6 ? 19 1 1 A U 12 1_555 B A 5 1_555 0.025 -0.136 0.150 -3.527 -11.288 -4.256 9 A_U12:A5_B A 12 ? B 5 ? 20 1 1 A C 13 1_555 B LCG 4 1_555 0.241 -0.217 0.014 3.393 -13.499 0.387 10 A_C13:LCG4_B A 13 ? B 4 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A LCG 4 1_555 B C 13 1_555 A A 5 1_555 B U 12 1_555 -0.557 -1.330 3.054 -2.960 2.949 32.387 -2.839 0.517 2.963 5.259 5.280 32.648 1 AA_LCG4A5:U12C13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A A 5 1_555 B U 12 1_555 A C 6 1_555 B G 11 1_555 0.540 -1.676 3.116 2.074 3.143 32.802 -3.448 -0.622 2.974 5.543 -3.657 33.012 2 AA_A5C6:G11U12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A C 6 1_555 B G 11 1_555 A U 7 1_555 B A 10 1_555 -0.360 -1.841 3.281 -2.654 10.574 28.315 -5.465 0.200 2.472 20.672 5.188 30.301 3 AA_C6U7:A10G11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A U 7 1_555 B A 10 1_555 A U 8 1_555 B A 9 1_555 -0.161 -1.144 3.162 -2.402 9.614 31.983 -3.449 -0.085 2.718 16.946 4.234 33.444 4 AA_U7U8:A9A10_BB A 7 ? B 10 ? A 8 ? B 9 ? 1 A U 8 1_555 B A 9 1_555 A A 9 1_555 B U 8 1_555 0.409 -1.493 3.278 0.835 18.728 31.300 -4.710 -0.553 2.093 31.432 -1.402 36.364 5 AA_U8A9:U8A9_BB A 8 ? B 9 ? A 9 ? B 8 ? 1 A A 9 1_555 B U 8 1_555 A A 10 1_555 B U 7 1_555 -0.564 -1.446 3.203 -0.573 7.194 32.704 -3.620 0.891 2.839 12.586 1.002 33.470 6 AA_A9A10:U7U8_BB A 9 ? B 8 ? A 10 ? B 7 ? 1 A A 10 1_555 B U 7 1_555 A G 11 1_555 B C 6 1_555 0.130 -1.635 3.312 2.485 9.389 30.317 -4.602 0.191 2.700 17.401 -4.605 31.800 7 AA_A10G11:C6U7_BB A 10 ? B 7 ? A 11 ? B 6 ? 1 A G 11 1_555 B C 6 1_555 A U 12 1_555 B A 5 1_555 -0.449 -1.407 3.098 -2.150 4.200 33.603 -3.035 0.451 2.928 7.220 3.696 33.923 8 AA_G11U12:A5C6_BB A 11 ? B 6 ? A 12 ? B 5 ? 1 A U 12 1_555 B A 5 1_555 A C 13 1_555 B LCG 4 1_555 0.623 -1.225 3.028 2.919 4.612 32.068 -2.921 -0.649 2.873 8.274 -5.237 32.517 9 AA_U12C13:LCG4A5_BB A 12 ? B 5 ? A 13 ? B 4 ? # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6C8N _pdbx_initial_refinement_model.details 'PDB entry 6C8N' # _atom_sites.entry_id 8SX6 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.022975 _atom_sites.fract_transf_matrix[1][2] 0.013264 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026529 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012478 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P # loop_