HEADER RNA BINDING PROTEIN/RNA 24-MAY-23 8SXU TITLE STRUCTURE OF LINE-1 ORF2P WITH AN OLIGO(A) TEMPLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LINE-1 RETROTRANSPOSABLE ELEMENT ORF2 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ORF2P; COMPND 5 EC: 2.7.7.49,3.1.21.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (25-MER); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630 KEYWDS REVERSE TRANSCRIPTASE, LINE-1, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR T.VAN EEUWEN,M.S.TAYLOR,M.P.ROUT REVDAT 2 14-FEB-24 8SXU 1 JRNL REVDAT 1 10-JAN-24 8SXU 0 JRNL AUTH E.T.BALDWIN,T.VAN EEUWEN,D.HOYOS,A.ZALEVSKY,E.P.TCHESNOKOV, JRNL AUTH 2 R.SANCHEZ,B.D.MILLER,L.H.DI STEFANO,F.X.RUIZ,M.HANCOCK, JRNL AUTH 3 E.ISIK,C.MENDEZ-DORANTES,T.WALPOLE,C.NICHOLS,P.WAN,K.RIENTO, JRNL AUTH 4 R.HALLS-KASS,M.AUGUSTIN,A.LAMMENS,A.JESTEL,P.UPLA, JRNL AUTH 5 K.XIBINAKU,S.CONGREVE,M.HENNINK,K.B.ROGALA,A.M.SCHNEIDER, JRNL AUTH 6 J.E.FAIRMAN,S.M.CHRISTENSEN,B.DESROSIERS,G.S.BISACCHI, JRNL AUTH 7 O.L.SAUNDERS,N.HAFEEZ,W.MIAO,R.KAPELLER,D.M.ZALLER,A.SALI, JRNL AUTH 8 O.WEICHENRIEDER,K.H.BURNS,M.GOTTE,M.P.ROUT,E.ARNOLD, JRNL AUTH 9 B.D.GREENBAUM,D.L.ROMERO,J.LACAVA,M.S.TAYLOR JRNL TITL STRUCTURES, FUNCTIONS AND ADAPTATIONS OF THE HUMAN LINE-1 JRNL TITL 2 ORF2 PROTEIN. JRNL REF NATURE V. 626 194 2024 JRNL REFN ESSN 1476-4687 JRNL PMID 38096902 JRNL DOI 10.1038/S41586-023-06947-Z REMARK 2 REMARK 2 RESOLUTION. 3.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, LEGINON, CRYOSPARC, CTFFIND, REMARK 3 CRYOSPARC, RELION, CRYOSPARC, CRYOSPARC, REMARK 3 PHENIX REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 8C8J REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : 203.000 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.660 REMARK 3 NUMBER OF PARTICLES : 203314 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING ONLY REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8SXU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000274733. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : LONG INTERSPERSED NUCLEAR REMARK 245 ELEMENT (LINE)-1 ORF2 PROTEIN REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.15 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : MANUALLY BLOTTED FROM THE BACK REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.60 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 11270 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2750.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5400.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 ASN A 5 REMARK 465 SER A 6 REMARK 465 HIS A 7 REMARK 465 ILE A 8 REMARK 465 THR A 9 REMARK 465 ILE A 10 REMARK 465 LEU A 11 REMARK 465 THR A 12 REMARK 465 LEU A 13 REMARK 465 ASN A 14 REMARK 465 VAL A 15 REMARK 465 ASN A 16 REMARK 465 GLY A 17 REMARK 465 LEU A 18 REMARK 465 ASN A 19 REMARK 465 SER A 20 REMARK 465 PRO A 21 REMARK 465 ILE A 22 REMARK 465 LYS A 23 REMARK 465 ARG A 24 REMARK 465 HIS A 25 REMARK 465 ARG A 26 REMARK 465 LEU A 27 REMARK 465 ALA A 28 REMARK 465 SER A 29 REMARK 465 TRP A 30 REMARK 465 ILE A 31 REMARK 465 LYS A 32 REMARK 465 SER A 33 REMARK 465 GLN A 34 REMARK 465 ASP A 35 REMARK 465 PRO A 36 REMARK 465 SER A 37 REMARK 465 VAL A 38 REMARK 465 CYS A 39 REMARK 465 CYS A 40 REMARK 465 ILE A 41 REMARK 465 GLN A 42 REMARK 465 GLU A 43 REMARK 465 THR A 44 REMARK 465 HIS A 45 REMARK 465 LEU A 46 REMARK 465 THR A 47 REMARK 465 CYS A 48 REMARK 465 ARG A 49 REMARK 465 ASP A 50 REMARK 465 THR A 51 REMARK 465 HIS A 52 REMARK 465 ARG A 53 REMARK 465 LEU A 54 REMARK 465 LYS A 55 REMARK 465 ILE A 56 REMARK 465 LYS A 57 REMARK 465 GLY A 58 REMARK 465 TRP A 59 REMARK 465 ARG A 60 REMARK 465 LYS A 61 REMARK 465 ILE A 62 REMARK 465 TYR A 63 REMARK 465 GLN A 64 REMARK 465 ALA A 65 REMARK 465 ASN A 66 REMARK 465 GLY A 67 REMARK 465 LYS A 68 REMARK 465 GLN A 69 REMARK 465 LYS A 70 REMARK 465 LYS A 71 REMARK 465 ALA A 72 REMARK 465 GLY A 73 REMARK 465 VAL A 74 REMARK 465 ALA A 75 REMARK 465 ILE A 76 REMARK 465 LEU A 77 REMARK 465 VAL A 78 REMARK 465 SER A 79 REMARK 465 ASP A 80 REMARK 465 LYS A 81 REMARK 465 THR A 82 REMARK 465 ASP A 83 REMARK 465 PHE A 84 REMARK 465 LYS A 85 REMARK 465 PRO A 86 REMARK 465 THR A 87 REMARK 465 LYS A 88 REMARK 465 ILE A 89 REMARK 465 LYS A 90 REMARK 465 ARG A 91 REMARK 465 ASP A 92 REMARK 465 LYS A 93 REMARK 465 GLU A 94 REMARK 465 GLY A 95 REMARK 465 HIS A 96 REMARK 465 TYR A 97 REMARK 465 ILE A 98 REMARK 465 MET A 99 REMARK 465 VAL A 100 REMARK 465 LYS A 101 REMARK 465 GLY A 102 REMARK 465 SER A 103 REMARK 465 ILE A 104 REMARK 465 GLN A 105 REMARK 465 GLN A 106 REMARK 465 GLU A 107 REMARK 465 GLU A 108 REMARK 465 LEU A 109 REMARK 465 THR A 110 REMARK 465 ILE A 111 REMARK 465 LEU A 112 REMARK 465 ASN A 113 REMARK 465 ILE A 114 REMARK 465 TYR A 115 REMARK 465 ALA A 116 REMARK 465 PRO A 117 REMARK 465 ASN A 118 REMARK 465 THR A 119 REMARK 465 GLY A 120 REMARK 465 ALA A 121 REMARK 465 PRO A 122 REMARK 465 ARG A 123 REMARK 465 PHE A 124 REMARK 465 ILE A 125 REMARK 465 LYS A 126 REMARK 465 GLN A 127 REMARK 465 VAL A 128 REMARK 465 LEU A 129 REMARK 465 SER A 130 REMARK 465 ASP A 131 REMARK 465 LEU A 132 REMARK 465 GLN A 133 REMARK 465 ARG A 134 REMARK 465 ASP A 135 REMARK 465 LEU A 136 REMARK 465 ASP A 137 REMARK 465 SER A 138 REMARK 465 HIS A 139 REMARK 465 THR A 140 REMARK 465 LEU A 141 REMARK 465 ILE A 142 REMARK 465 MET A 143 REMARK 465 GLY A 144 REMARK 465 ASP A 145 REMARK 465 PHE A 146 REMARK 465 ASN A 147 REMARK 465 THR A 148 REMARK 465 PRO A 149 REMARK 465 LEU A 150 REMARK 465 SER A 151 REMARK 465 ILE A 152 REMARK 465 LEU A 153 REMARK 465 ASP A 154 REMARK 465 ARG A 155 REMARK 465 SER A 156 REMARK 465 THR A 157 REMARK 465 ARG A 158 REMARK 465 GLN A 159 REMARK 465 LYS A 160 REMARK 465 VAL A 161 REMARK 465 ASN A 162 REMARK 465 LYS A 163 REMARK 465 ASP A 164 REMARK 465 THR A 165 REMARK 465 GLN A 166 REMARK 465 GLU A 167 REMARK 465 LEU A 168 REMARK 465 ASN A 169 REMARK 465 SER A 170 REMARK 465 ALA A 171 REMARK 465 LEU A 172 REMARK 465 HIS A 173 REMARK 465 GLN A 174 REMARK 465 THR A 175 REMARK 465 ASP A 176 REMARK 465 LEU A 177 REMARK 465 ILE A 178 REMARK 465 ASP A 179 REMARK 465 ILE A 180 REMARK 465 TYR A 181 REMARK 465 ARG A 182 REMARK 465 THR A 183 REMARK 465 LEU A 184 REMARK 465 HIS A 185 REMARK 465 PRO A 186 REMARK 465 LYS A 187 REMARK 465 SER A 188 REMARK 465 THR A 189 REMARK 465 GLU A 190 REMARK 465 TYR A 191 REMARK 465 THR A 192 REMARK 465 PHE A 193 REMARK 465 PHE A 194 REMARK 465 SER A 195 REMARK 465 ALA A 196 REMARK 465 PRO A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 465 THR A 200 REMARK 465 TYR A 201 REMARK 465 SER A 202 REMARK 465 LYS A 203 REMARK 465 ILE A 204 REMARK 465 ASP A 205 REMARK 465 HIS A 206 REMARK 465 ILE A 207 REMARK 465 VAL A 208 REMARK 465 GLY A 209 REMARK 465 SER A 210 REMARK 465 LYS A 211 REMARK 465 ALA A 212 REMARK 465 LEU A 213 REMARK 465 LEU A 214 REMARK 465 SER A 215 REMARK 465 LYS A 216 REMARK 465 CYS A 217 REMARK 465 LYS A 218 REMARK 465 ARG A 219 REMARK 465 THR A 220 REMARK 465 GLU A 221 REMARK 465 ILE A 222 REMARK 465 ILE A 223 REMARK 465 THR A 224 REMARK 465 ASN A 225 REMARK 465 TYR A 226 REMARK 465 LEU A 227 REMARK 465 SER A 228 REMARK 465 ASP A 229 REMARK 465 HIS A 230 REMARK 465 SER A 231 REMARK 465 ALA A 232 REMARK 465 ILE A 233 REMARK 465 LYS A 234 REMARK 465 LEU A 235 REMARK 465 GLU A 236 REMARK 465 LEU A 237 REMARK 465 ARG A 238 REMARK 465 ILE A 239 REMARK 465 LYS A 240 REMARK 465 ASN A 241 REMARK 465 LEU A 242 REMARK 465 THR A 243 REMARK 465 GLN A 244 REMARK 465 SER A 245 REMARK 465 ARG A 246 REMARK 465 SER A 247 REMARK 465 THR A 248 REMARK 465 THR A 249 REMARK 465 TRP A 250 REMARK 465 LYS A 251 REMARK 465 LEU A 252 REMARK 465 ASN A 253 REMARK 465 ARG A 311 REMARK 465 SER A 312 REMARK 465 LYS A 313 REMARK 465 ILE A 314 REMARK 465 ASP A 315 REMARK 465 THR A 316 REMARK 465 LEU A 317 REMARK 465 THR A 318 REMARK 465 SER A 319 REMARK 465 GLN A 320 REMARK 465 LEU A 321 REMARK 465 LYS A 322 REMARK 465 GLU A 323 REMARK 465 LEU A 324 REMARK 465 GLU A 325 REMARK 465 LYS A 326 REMARK 465 GLN A 327 REMARK 465 GLU A 328 REMARK 465 GLN A 329 REMARK 465 THR A 330 REMARK 465 HIS A 331 REMARK 465 SER A 332 REMARK 465 LYS A 333 REMARK 465 ALA A 334 REMARK 465 SER A 335 REMARK 465 ARG A 336 REMARK 465 ARG A 337 REMARK 465 GLN A 338 REMARK 465 GLU A 339 REMARK 465 ILE A 340 REMARK 465 THR A 341 REMARK 465 LYS A 342 REMARK 465 ILE A 343 REMARK 465 ARG A 344 REMARK 465 ALA A 345 REMARK 465 GLU A 346 REMARK 465 LEU A 347 REMARK 465 LYS A 348 REMARK 465 GLU A 349 REMARK 465 ILE A 350 REMARK 465 GLU A 351 REMARK 465 THR A 352 REMARK 465 GLN A 353 REMARK 465 LYS A 354 REMARK 465 THR A 355 REMARK 465 LEU A 356 REMARK 465 GLN A 357 REMARK 465 LYS A 358 REMARK 465 ILE A 359 REMARK 465 ASN A 360 REMARK 465 GLU A 361 REMARK 465 SER A 362 REMARK 465 ARG A 363 REMARK 465 SER A 364 REMARK 465 TRP A 365 REMARK 465 PHE A 366 REMARK 465 PHE A 367 REMARK 465 GLU A 368 REMARK 465 ARG A 369 REMARK 465 ILE A 370 REMARK 465 ASN A 371 REMARK 465 LYS A 372 REMARK 465 ILE A 373 REMARK 465 ASP A 374 REMARK 465 ARG A 375 REMARK 465 PRO A 376 REMARK 465 LEU A 377 REMARK 465 ALA A 378 REMARK 465 ARG A 379 REMARK 465 LEU A 380 REMARK 465 ILE A 381 REMARK 465 LYS A 382 REMARK 465 LYS A 383 REMARK 465 LYS A 384 REMARK 465 ARG A 385 REMARK 465 GLU A 386 REMARK 465 LYS A 387 REMARK 465 ASN A 388 REMARK 465 GLN A 389 REMARK 465 ILE A 390 REMARK 465 ASP A 391 REMARK 465 THR A 392 REMARK 465 LYS A 1062 REMARK 465 LYS A 1063 REMARK 465 LYS A 1064 REMARK 465 THR A 1065 REMARK 465 ASN A 1066 REMARK 465 ASN A 1067 REMARK 465 PRO A 1068 REMARK 465 ILE A 1069 REMARK 465 LYS A 1070 REMARK 465 LYS A 1071 REMARK 465 TRP A 1072 REMARK 465 ALA A 1073 REMARK 465 LYS A 1074 REMARK 465 ASP A 1075 REMARK 465 MET A 1076 REMARK 465 ASN A 1077 REMARK 465 ARG A 1078 REMARK 465 HIS A 1079 REMARK 465 PHE A 1080 REMARK 465 SER A 1081 REMARK 465 LYS A 1082 REMARK 465 GLU A 1083 REMARK 465 ASP A 1084 REMARK 465 ILE A 1085 REMARK 465 TYR A 1086 REMARK 465 ALA A 1087 REMARK 465 ALA A 1088 REMARK 465 LYS A 1089 REMARK 465 LYS A 1090 REMARK 465 HIS A 1091 REMARK 465 MET A 1092 REMARK 465 LYS A 1093 REMARK 465 LYS A 1094 REMARK 465 CYS A 1095 REMARK 465 SER A 1096 REMARK 465 SER A 1097 REMARK 465 SER A 1098 REMARK 465 LEU A 1099 REMARK 465 ALA A 1100 REMARK 465 ILE A 1101 REMARK 465 ARG A 1102 REMARK 465 GLU A 1103 REMARK 465 MET A 1104 REMARK 465 GLN A 1105 REMARK 465 ILE A 1106 REMARK 465 LYS A 1107 REMARK 465 THR A 1108 REMARK 465 THR A 1109 REMARK 465 MET A 1110 REMARK 465 ARG A 1111 REMARK 465 TYR A 1112 REMARK 465 HIS A 1113 REMARK 465 LEU A 1114 REMARK 465 THR A 1115 REMARK 465 PRO A 1116 REMARK 465 VAL A 1117 REMARK 465 ARG A 1118 REMARK 465 MET A 1119 REMARK 465 ALA A 1120 REMARK 465 ILE A 1121 REMARK 465 ILE A 1122 REMARK 465 LYS A 1123 REMARK 465 LYS A 1124 REMARK 465 SER A 1125 REMARK 465 GLY A 1126 REMARK 465 ASN A 1127 REMARK 465 ASN A 1128 REMARK 465 ARG A 1129 REMARK 465 CYS A 1130 REMARK 465 TRP A 1131 REMARK 465 ARG A 1132 REMARK 465 GLY A 1133 REMARK 465 CYS A 1134 REMARK 465 GLY A 1135 REMARK 465 GLU A 1136 REMARK 465 ILE A 1137 REMARK 465 GLY A 1138 REMARK 465 THR A 1139 REMARK 465 LEU A 1140 REMARK 465 VAL A 1141 REMARK 465 HIS A 1142 REMARK 465 CYS A 1143 REMARK 465 TRP A 1144 REMARK 465 TRP A 1145 REMARK 465 ASP A 1146 REMARK 465 CYS A 1147 REMARK 465 LYS A 1148 REMARK 465 LEU A 1149 REMARK 465 VAL A 1150 REMARK 465 GLN A 1151 REMARK 465 PRO A 1152 REMARK 465 LEU A 1153 REMARK 465 TRP A 1154 REMARK 465 LYS A 1155 REMARK 465 SER A 1156 REMARK 465 VAL A 1157 REMARK 465 TRP A 1158 REMARK 465 ARG A 1159 REMARK 465 PHE A 1160 REMARK 465 LEU A 1161 REMARK 465 ARG A 1162 REMARK 465 ASP A 1163 REMARK 465 LEU A 1164 REMARK 465 GLU A 1165 REMARK 465 LEU A 1166 REMARK 465 GLU A 1167 REMARK 465 ILE A 1168 REMARK 465 PRO A 1169 REMARK 465 PHE A 1170 REMARK 465 ASP A 1171 REMARK 465 PRO A 1172 REMARK 465 ALA A 1173 REMARK 465 ILE A 1174 REMARK 465 PRO A 1175 REMARK 465 LEU A 1176 REMARK 465 LEU A 1177 REMARK 465 GLY A 1178 REMARK 465 ILE A 1179 REMARK 465 TYR A 1180 REMARK 465 PRO A 1181 REMARK 465 LYS A 1182 REMARK 465 ASP A 1183 REMARK 465 TYR A 1184 REMARK 465 LYS A 1185 REMARK 465 SER A 1186 REMARK 465 CYS A 1187 REMARK 465 CYS A 1188 REMARK 465 TYR A 1189 REMARK 465 LYS A 1190 REMARK 465 ASP A 1191 REMARK 465 THR A 1192 REMARK 465 CYS A 1193 REMARK 465 THR A 1194 REMARK 465 ARG A 1195 REMARK 465 MET A 1196 REMARK 465 PHE A 1197 REMARK 465 ILE A 1198 REMARK 465 ALA A 1199 REMARK 465 ALA A 1200 REMARK 465 LEU A 1201 REMARK 465 PHE A 1202 REMARK 465 THR A 1203 REMARK 465 ILE A 1204 REMARK 465 ALA A 1205 REMARK 465 LYS A 1206 REMARK 465 THR A 1207 REMARK 465 TRP A 1208 REMARK 465 ASN A 1209 REMARK 465 GLN A 1210 REMARK 465 PRO A 1211 REMARK 465 ASN A 1212 REMARK 465 CYS A 1213 REMARK 465 PRO A 1214 REMARK 465 THR A 1215 REMARK 465 MET A 1216 REMARK 465 ILE A 1217 REMARK 465 ASP A 1218 REMARK 465 TRP A 1219 REMARK 465 ILE A 1220 REMARK 465 LYS A 1221 REMARK 465 LYS A 1222 REMARK 465 MET A 1223 REMARK 465 TRP A 1224 REMARK 465 HIS A 1225 REMARK 465 ILE A 1226 REMARK 465 TYR A 1227 REMARK 465 THR A 1228 REMARK 465 MET A 1229 REMARK 465 GLU A 1230 REMARK 465 TYR A 1231 REMARK 465 TYR A 1232 REMARK 465 ALA A 1233 REMARK 465 ALA A 1234 REMARK 465 ILE A 1235 REMARK 465 LYS A 1236 REMARK 465 ASN A 1237 REMARK 465 ASP A 1238 REMARK 465 GLU A 1239 REMARK 465 PHE A 1240 REMARK 465 ILE A 1241 REMARK 465 SER A 1242 REMARK 465 PHE A 1243 REMARK 465 VAL A 1244 REMARK 465 GLY A 1245 REMARK 465 THR A 1246 REMARK 465 TRP A 1247 REMARK 465 MET A 1248 REMARK 465 LYS A 1249 REMARK 465 LEU A 1250 REMARK 465 GLU A 1251 REMARK 465 THR A 1252 REMARK 465 ILE A 1253 REMARK 465 ILE A 1254 REMARK 465 LEU A 1255 REMARK 465 SER A 1256 REMARK 465 LYS A 1257 REMARK 465 LEU A 1258 REMARK 465 SER A 1259 REMARK 465 GLN A 1260 REMARK 465 GLU A 1261 REMARK 465 GLN A 1262 REMARK 465 LYS A 1263 REMARK 465 THR A 1264 REMARK 465 LYS A 1265 REMARK 465 HIS A 1266 REMARK 465 ARG A 1267 REMARK 465 ILE A 1268 REMARK 465 PHE A 1269 REMARK 465 SER A 1270 REMARK 465 LEU A 1271 REMARK 465 ILE A 1272 REMARK 465 GLY A 1273 REMARK 465 GLY A 1274 REMARK 465 ASN A 1275 REMARK 465 A C 12 REMARK 465 A C 13 REMARK 465 A C 14 REMARK 465 A C 15 REMARK 465 A C 16 REMARK 465 A C 17 REMARK 465 A C 18 REMARK 465 A C 19 REMARK 465 A C 20 REMARK 465 A C 21 REMARK 465 A C 22 REMARK 465 A C 23 REMARK 465 A C 24 REMARK 465 A C 25 REMARK 465 A C 26 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 534 O GLN A 659 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 464 51.02 -90.45 REMARK 500 ASP A 474 2.63 57.99 REMARK 500 TYR A 484 36.18 -98.74 REMARK 500 LYS A 636 59.90 -156.78 REMARK 500 ASN A 710 71.81 53.53 REMARK 500 TYR A 914 56.33 -96.91 REMARK 500 LYS A 928 -95.90 54.49 REMARK 500 LEU A 981 -60.87 -102.49 REMARK 500 ILE A 983 -62.39 -97.45 REMARK 500 MET A 995 37.34 37.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-40858 RELATED DB: EMDB REMARK 900 STRUCTURE OF LINE-1 ORF2P WITH TEMPLATE:PRIMER HYBRID REMARK 900 RELATED ID: EMD-40856 RELATED DB: EMDB REMARK 900 SINGLE PARTICLE RECONSTRUCTION OF THE HUMAN LINE-1 ORF2P WITHOUT REMARK 900 SUBSTRATE (APO) REMARK 900 RELATED ID: 8SXT RELATED DB: PDB REMARK 900 RELATED ID: EMD-40859 RELATED DB: EMDB REMARK 900 STRUCTURE OF LINE-1 ORF2P WITH AN OLIGO(A) TEMPLATE DBREF 8SXU A 1 1275 UNP O00370 LORF2_HUMAN 1 1275 DBREF 8SXU C 2 26 PDB 8SXU 8SXU 2 26 SEQRES 1 A 1275 MET THR GLY SER ASN SER HIS ILE THR ILE LEU THR LEU SEQRES 2 A 1275 ASN VAL ASN GLY LEU ASN SER PRO ILE LYS ARG HIS ARG SEQRES 3 A 1275 LEU ALA SER TRP ILE LYS SER GLN ASP PRO SER VAL CYS SEQRES 4 A 1275 CYS ILE GLN GLU THR HIS LEU THR CYS ARG ASP THR HIS SEQRES 5 A 1275 ARG LEU LYS ILE LYS GLY TRP ARG LYS ILE TYR GLN ALA SEQRES 6 A 1275 ASN GLY LYS GLN LYS LYS ALA GLY VAL ALA ILE LEU VAL SEQRES 7 A 1275 SER ASP LYS THR ASP PHE LYS PRO THR LYS ILE LYS ARG SEQRES 8 A 1275 ASP LYS GLU GLY HIS TYR ILE MET VAL LYS GLY SER ILE SEQRES 9 A 1275 GLN GLN GLU GLU LEU THR ILE LEU ASN ILE TYR ALA PRO SEQRES 10 A 1275 ASN THR GLY ALA PRO ARG PHE ILE LYS GLN VAL LEU SER SEQRES 11 A 1275 ASP LEU GLN ARG ASP LEU ASP SER HIS THR LEU ILE MET SEQRES 12 A 1275 GLY ASP PHE ASN THR PRO LEU SER ILE LEU ASP ARG SER SEQRES 13 A 1275 THR ARG GLN LYS VAL ASN LYS ASP THR GLN GLU LEU ASN SEQRES 14 A 1275 SER ALA LEU HIS GLN THR ASP LEU ILE ASP ILE TYR ARG SEQRES 15 A 1275 THR LEU HIS PRO LYS SER THR GLU TYR THR PHE PHE SER SEQRES 16 A 1275 ALA PRO HIS HIS THR TYR SER LYS ILE ASP HIS ILE VAL SEQRES 17 A 1275 GLY SER LYS ALA LEU LEU SER LYS CYS LYS ARG THR GLU SEQRES 18 A 1275 ILE ILE THR ASN TYR LEU SER ASP HIS SER ALA ILE LYS SEQRES 19 A 1275 LEU GLU LEU ARG ILE LYS ASN LEU THR GLN SER ARG SER SEQRES 20 A 1275 THR THR TRP LYS LEU ASN ASN LEU LEU LEU ASN ASP TYR SEQRES 21 A 1275 TRP VAL HIS ASN GLU MET LYS ALA GLU ILE LYS MET PHE SEQRES 22 A 1275 PHE GLU THR ASN GLU ASN LYS ASP THR THR TYR GLN ASN SEQRES 23 A 1275 LEU TRP ASP ALA PHE LYS ALA VAL CYS ARG GLY LYS PHE SEQRES 24 A 1275 ILE ALA LEU ASN ALA TYR LYS ARG LYS GLN GLU ARG SER SEQRES 25 A 1275 LYS ILE ASP THR LEU THR SER GLN LEU LYS GLU LEU GLU SEQRES 26 A 1275 LYS GLN GLU GLN THR HIS SER LYS ALA SER ARG ARG GLN SEQRES 27 A 1275 GLU ILE THR LYS ILE ARG ALA GLU LEU LYS GLU ILE GLU SEQRES 28 A 1275 THR GLN LYS THR LEU GLN LYS ILE ASN GLU SER ARG SER SEQRES 29 A 1275 TRP PHE PHE GLU ARG ILE ASN LYS ILE ASP ARG PRO LEU SEQRES 30 A 1275 ALA ARG LEU ILE LYS LYS LYS ARG GLU LYS ASN GLN ILE SEQRES 31 A 1275 ASP THR ILE LYS ASN ASP LYS GLY ASP ILE THR THR ASP SEQRES 32 A 1275 PRO THR GLU ILE GLN THR THR ILE ARG GLU TYR TYR LYS SEQRES 33 A 1275 HIS LEU TYR ALA ASN LYS LEU GLU ASN LEU GLU GLU MET SEQRES 34 A 1275 ASP THR PHE LEU ASP THR TYR THR LEU PRO ARG LEU ASN SEQRES 35 A 1275 GLN GLU GLU VAL GLU SER LEU ASN ARG PRO ILE THR GLY SEQRES 36 A 1275 SER GLU ILE VAL ALA ILE ILE ASN SER LEU PRO THR LYS SEQRES 37 A 1275 LYS SER PRO GLY PRO ASP GLY PHE THR ALA GLU PHE TYR SEQRES 38 A 1275 GLN ARG TYR LYS GLU GLU LEU VAL PRO PHE LEU LEU LYS SEQRES 39 A 1275 LEU PHE GLN SER ILE GLU LYS GLU GLY ILE LEU PRO ASN SEQRES 40 A 1275 SER PHE TYR GLU ALA SER ILE ILE LEU ILE PRO LYS PRO SEQRES 41 A 1275 GLY ARG ASP THR THR LYS LYS GLU ASN PHE ARG PRO ILE SEQRES 42 A 1275 SER LEU MET ASN ILE ASP ALA LYS ILE LEU ASN LYS ILE SEQRES 43 A 1275 LEU ALA ASN ARG ILE GLN GLN HIS ILE LYS LYS LEU ILE SEQRES 44 A 1275 HIS HIS ASP GLN VAL GLY PHE ILE PRO GLY MET GLN GLY SEQRES 45 A 1275 TRP PHE ASN ILE ARG LYS SER ILE ASN VAL ILE GLN HIS SEQRES 46 A 1275 ILE ASN ARG ALA LYS ASP LYS ASN HIS VAL ILE ILE SER SEQRES 47 A 1275 ILE ASP ALA GLU LYS ALA PHE ASP LYS ILE GLN GLN PRO SEQRES 48 A 1275 PHE MET LEU LYS THR LEU ASN LYS LEU GLY ILE ASP GLY SEQRES 49 A 1275 MET TYR LEU LYS ILE ILE ARG ALA ILE TYR ASP LYS PRO SEQRES 50 A 1275 THR ALA ASN ILE ILE LEU ASN GLY GLN LYS LEU GLU ALA SEQRES 51 A 1275 PHE PRO LEU LYS THR GLY THR ARG GLN GLY CYS PRO LEU SEQRES 52 A 1275 SER PRO LEU LEU PHE ASN ILE VAL LEU GLU VAL LEU ALA SEQRES 53 A 1275 ARG ALA ILE ARG GLN GLU LYS GLU ILE LYS GLY ILE GLN SEQRES 54 A 1275 LEU GLY LYS GLU GLU VAL LYS LEU SER LEU PHE ALA ASP SEQRES 55 A 1275 ASP MET ILE VAL TYR LEU GLU ASN PRO ILE VAL SER ALA SEQRES 56 A 1275 GLN ASN LEU LEU LYS LEU ILE SER ASN PHE SER LYS VAL SEQRES 57 A 1275 SER GLY TYR LYS ILE ASN VAL GLN LYS SER GLN ALA PHE SEQRES 58 A 1275 LEU TYR ASN ASN ASN ARG GLN THR GLU SER GLN ILE MET SEQRES 59 A 1275 GLY GLU LEU PRO PHE THR ILE ALA SER LYS ARG ILE LYS SEQRES 60 A 1275 TYR LEU GLY ILE GLN LEU THR ARG ASP VAL LYS ASP LEU SEQRES 61 A 1275 PHE LYS GLU ASN TYR LYS PRO LEU LEU LYS GLU ILE LYS SEQRES 62 A 1275 GLU ASP THR ASN LYS TRP LYS ASN ILE PRO CYS SER TRP SEQRES 63 A 1275 VAL GLY ARG ILE ASN ILE VAL LYS MET ALA ILE LEU PRO SEQRES 64 A 1275 LYS VAL ILE TYR ARG PHE ASN ALA ILE PRO ILE LYS LEU SEQRES 65 A 1275 PRO MET THR PHE PHE THR GLU LEU GLU LYS THR THR LEU SEQRES 66 A 1275 LYS PHE ILE TRP ASN GLN LYS ARG ALA ARG ILE ALA LYS SEQRES 67 A 1275 SER ILE LEU SER GLN LYS ASN LYS ALA GLY GLY ILE THR SEQRES 68 A 1275 LEU PRO ASP PHE LYS LEU TYR TYR LYS ALA THR VAL THR SEQRES 69 A 1275 LYS THR ALA TRP TYR TRP TYR GLN ASN ARG ASP ILE ASP SEQRES 70 A 1275 GLN TRP ASN ARG THR GLU PRO SER GLU ILE MET PRO HIS SEQRES 71 A 1275 ILE TYR ASN TYR LEU ILE PHE ASP LYS PRO GLU LYS ASN SEQRES 72 A 1275 LYS GLN TRP GLY LYS ASP SER LEU LEU ASN LYS TRP CYS SEQRES 73 A 1275 TRP GLU ASN TRP LEU ALA ILE CYS ARG LYS LEU LYS LEU SEQRES 74 A 1275 ASP PRO PHE LEU THR PRO TYR THR LYS ILE ASN SER ARG SEQRES 75 A 1275 TRP ILE LYS ASP LEU ASN VAL LYS PRO LYS THR ILE LYS SEQRES 76 A 1275 THR LEU GLU GLU ASN LEU GLY ILE THR ILE GLN ASP ILE SEQRES 77 A 1275 GLY VAL GLY LYS ASP PHE MET SER LYS THR PRO LYS ALA SEQRES 78 A 1275 MET ALA THR LYS ASP LYS ILE ASP LYS TRP ASP LEU ILE SEQRES 79 A 1275 LYS LEU LYS SER PHE CYS THR ALA LYS GLU THR THR ILE SEQRES 80 A 1275 ARG VAL ASN ARG GLN PRO THR THR TRP GLU LYS ILE PHE SEQRES 81 A 1275 ALA THR TYR SER SER ASP LYS GLY LEU ILE SER ARG ILE SEQRES 82 A 1275 TYR ASN GLU LEU LYS GLN ILE TYR LYS LYS LYS THR ASN SEQRES 83 A 1275 ASN PRO ILE LYS LYS TRP ALA LYS ASP MET ASN ARG HIS SEQRES 84 A 1275 PHE SER LYS GLU ASP ILE TYR ALA ALA LYS LYS HIS MET SEQRES 85 A 1275 LYS LYS CYS SER SER SER LEU ALA ILE ARG GLU MET GLN SEQRES 86 A 1275 ILE LYS THR THR MET ARG TYR HIS LEU THR PRO VAL ARG SEQRES 87 A 1275 MET ALA ILE ILE LYS LYS SER GLY ASN ASN ARG CYS TRP SEQRES 88 A 1275 ARG GLY CYS GLY GLU ILE GLY THR LEU VAL HIS CYS TRP SEQRES 89 A 1275 TRP ASP CYS LYS LEU VAL GLN PRO LEU TRP LYS SER VAL SEQRES 90 A 1275 TRP ARG PHE LEU ARG ASP LEU GLU LEU GLU ILE PRO PHE SEQRES 91 A 1275 ASP PRO ALA ILE PRO LEU LEU GLY ILE TYR PRO LYS ASP SEQRES 92 A 1275 TYR LYS SER CYS CYS TYR LYS ASP THR CYS THR ARG MET SEQRES 93 A 1275 PHE ILE ALA ALA LEU PHE THR ILE ALA LYS THR TRP ASN SEQRES 94 A 1275 GLN PRO ASN CYS PRO THR MET ILE ASP TRP ILE LYS LYS SEQRES 95 A 1275 MET TRP HIS ILE TYR THR MET GLU TYR TYR ALA ALA ILE SEQRES 96 A 1275 LYS ASN ASP GLU PHE ILE SER PHE VAL GLY THR TRP MET SEQRES 97 A 1275 LYS LEU GLU THR ILE ILE LEU SER LYS LEU SER GLN GLU SEQRES 98 A 1275 GLN LYS THR LYS HIS ARG ILE PHE SER LEU ILE GLY GLY SEQRES 99 A 1275 ASN SEQRES 1 C 25 A A A A A A A A A A A A A SEQRES 2 C 25 A A A A A A A A A A A A HELIX 1 AA1 LEU A 255 ASN A 258 5 4 HELIX 2 AA2 ASP A 259 GLU A 275 1 17 HELIX 3 AA3 THR A 283 GLU A 310 1 28 HELIX 4 AA4 ASP A 403 ASN A 421 1 19 HELIX 5 AA5 ASN A 425 TYR A 436 1 12 HELIX 6 AA6 ASN A 442 ASN A 450 1 9 HELIX 7 AA7 THR A 454 SER A 464 1 11 HELIX 8 AA8 ALA A 478 TYR A 484 1 7 HELIX 9 AA9 TYR A 484 GLY A 503 1 20 HELIX 10 AB1 PRO A 506 TYR A 510 5 5 HELIX 11 AB2 LYS A 526 GLU A 528 5 3 HELIX 12 AB3 ASN A 537 GLN A 553 1 17 HELIX 13 AB4 HIS A 554 ILE A 559 1 6 HELIX 14 AB5 GLY A 572 ALA A 589 1 18 HELIX 15 AB6 GLN A 609 LEU A 620 1 12 HELIX 16 AB7 GLY A 624 TYR A 634 1 11 HELIX 17 AB8 PRO A 662 GLU A 682 1 21 HELIX 18 AB9 VAL A 713 GLY A 730 1 18 HELIX 19 AC1 ASN A 746 LEU A 757 1 12 HELIX 20 AC2 ASP A 776 LYS A 778 5 3 HELIX 21 AC3 ASP A 779 THR A 796 1 18 HELIX 22 AC4 TRP A 806 ALA A 816 1 11 HELIX 23 AC5 ALA A 816 ILE A 828 1 13 HELIX 24 AC6 PRO A 833 TRP A 849 1 17 HELIX 25 AC7 ALA A 857 SER A 862 1 6 HELIX 26 AC8 ASP A 874 THR A 886 1 13 HELIX 27 AC9 THR A 886 ASN A 893 1 8 HELIX 28 AD1 GLN A 898 THR A 902 5 5 HELIX 29 AD2 ASN A 933 LEU A 947 1 15 HELIX 30 AD3 SER A 961 ASP A 966 1 6 HELIX 31 AD4 LYS A 970 GLU A 979 1 10 HELIX 32 AD5 THR A 984 GLY A 989 1 6 HELIX 33 AD6 THR A 998 ALA A 1003 1 6 HELIX 34 AD7 ASP A 1009 SER A 1018 1 10 HELIX 35 AD8 ALA A 1022 ASN A 1030 1 9 HELIX 36 AD9 THR A 1034 PHE A 1040 1 7 HELIX 37 AE1 GLY A 1048 TYR A 1061 1 14 SHEET 1 AA1 4 PHE A 530 MET A 536 0 SHEET 2 AA1 4 ALA A 512 PRO A 518 -1 N ILE A 517 O ARG A 531 SHEET 3 AA1 4 THR A 638 LEU A 643 1 O ASN A 640 N ALA A 512 SHEET 4 AA1 4 GLN A 646 PRO A 652 -1 O LEU A 648 N ILE A 641 SHEET 1 AA2 5 LEU A 697 SER A 698 0 SHEET 2 AA2 5 ASP A 703 GLU A 709 -1 O ILE A 705 N SER A 698 SHEET 3 AA2 5 HIS A 594 ASP A 600 -1 N VAL A 595 O LEU A 708 SHEET 4 AA2 5 GLN A 739 LEU A 742 -1 O PHE A 741 N ILE A 596 SHEET 5 AA2 5 THR A 760 ILE A 761 1 O THR A 760 N ALA A 740 SHEET 1 AA3 2 ILE A 688 LEU A 690 0 SHEET 2 AA3 2 GLU A 693 VAL A 695 -1 O GLU A 693 N LEU A 690 SHEET 1 AA4 2 LYS A 767 TYR A 768 0 SHEET 2 AA4 2 ILE A 771 GLN A 772 -1 O ILE A 771 N TYR A 768 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000