data_8SY1 # _entry.id 8SY1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8SY1 pdb_00008sy1 10.2210/pdb8sy1/pdb WWPDB D_1000274764 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8SY1 _pdbx_database_status.recvd_initial_deposition_date 2023-05-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, W.' 1 0000-0003-4811-4384 'Dantsu, Y.' 2 0000-0001-6774-8724 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Rsc Chem Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2633-0679 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 4 _citation.language ? _citation.page_first 942 _citation.page_last 951 _citation.title 'Insight into the structures of unusual base pairs in RNA complexes containing a primer/template/adenosine ligand.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/d3cb00137g _citation.pdbx_database_id_PubMed 37920395 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dantsu, Y.' 1 0000-0001-6774-8724 primary 'Zhang, Y.' 2 ? primary 'Zhang, W.' 3 0000-0003-4811-4384 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 8SY1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 43.656 _cell.length_a_esd ? _cell.length_b 43.656 _cell.length_b_esd ? _cell.length_c 81.126 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8SY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat ;RNA (5'-R(*(TLN)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G*(GMA))-3') ; 4513.789 4 ? ? ? ? 2 non-polymer syn ;[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-[2-azanyl-3-[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]imidazol-1-yl]phosphinic acid ; 758.511 4 ? ? ? ? 3 water nat water 18.015 56 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(TLN)(LCC)(LCC)(LCG)ACUUAAGUCG' _entity_poly.pdbx_seq_one_letter_code_can UNNGACUUAAGUCG _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TLN n 1 2 LCC n 1 3 LCC n 1 4 LCG n 1 5 A n 1 6 C n 1 7 U n 1 8 U n 1 9 A n 1 10 A n 1 11 G n 1 12 U n 1 13 C n 1 14 G n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 14 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'synthetic construct' _entity_src_nat.pdbx_ncbi_taxonomy_id 32630 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8SY1 _struct_ref.pdbx_db_accession 8SY1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8SY1 A 1 ? 14 ? 8SY1 1 ? 14 ? 1 14 2 1 8SY1 B 1 ? 14 ? 8SY1 1 ? 14 ? 1 14 3 1 8SY1 C 1 ? 14 ? 8SY1 1 ? 14 ? 1 14 4 1 8SY1 D 1 ? 14 ? 8SY1 1 ? 14 ? 1 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 LCC 'RNA linking' . '[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H16 N3 O8 P' 349.234 LCG 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H14 N5 O8 P' 375.231 TLN 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(THYMIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H15 N2 O9 P' 350.219 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 WZW non-polymer . ;[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-[2-azanyl-3-[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]imidazol-1-yl]phosphinic acid ; ? 'C23 H30 N13 O13 P2' 758.511 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8SY1 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 46.7 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.5 M ammonium sulfate, 0.1 M sodium citrate tribasic dihydrate, pH 5.6, 1.0 M lithium sulfate monohydrate' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 291 # _diffrn.ambient_environment ? _diffrn.ambient_temp 99 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MAR CCD 130 mm' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-10-15 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9785 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9785 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8SY1 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.76 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 15744 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 91.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.5 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 19.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.256 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.104 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.986 _reflns.pdbx_CC_star 0.996 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.099 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.76 _reflns_shell.d_res_low 1.82 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1726 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.5 _reflns_shell.pdbx_chi_squared 0.644 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.638 _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.825 _reflns_shell.pdbx_CC_star 0.951 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.577 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -0.01 _refine.B_iso_max ? _refine.B_iso_mean 25.779 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.931 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8SY1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.76 _refine.ls_d_res_low 34.29 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14945 _refine.ls_number_reflns_R_free 795 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 91.80 _refine.ls_percent_reflns_R_free 5.1 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.22543 _refine.ls_R_factor_R_free 0.25633 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.22375 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 8SWG' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.160 _refine.pdbx_overall_ESU_R_Free 0.145 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 3.092 _refine.overall_SU_ML 0.103 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.details ? _refine_hist.d_res_high 1.76 _refine_hist.d_res_low 34.29 _refine_hist.number_atoms_solvent 56 _refine_hist.number_atoms_total 1400 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1196 _refine_hist.pdbx_number_atoms_ligand 148 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.022 0.017 1508 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.023 0.024 692 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.837 1.986 2356 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 3.826 3.097 1622 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.141 0.200 266 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.017 0.021 754 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.022 268 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 2.585 2.737 1508 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.563 2.736 1505 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 3.322 4.102 2354 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 4.500 26.833 2091 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 4.500 26.832 2091 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.761 _refine_ls_shell.d_res_low 1.807 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 99 _refine_ls_shell.number_reflns_R_work 1187 _refine_ls_shell.percent_reflns_obs 98.62 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.119 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.212 # _struct.entry_id 8SY1 _struct.title 'RNA duplex bound with imidazolium bridged GA dinucleotide' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8SY1 _struct_keywords.text 'RNA, imidazolium bridged GA dinucleotide' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A TLN 1 "O3'" ? ? ? 1_555 A LCC 2 P ? ? A TLN 1 A LCC 2 1_555 ? ? ? ? ? ? ? 1.669 ? ? covale2 covale both ? A LCC 2 "O3'" ? ? ? 1_555 A LCC 3 P ? ? A LCC 2 A LCC 3 1_555 ? ? ? ? ? ? ? 1.617 ? ? covale3 covale both ? A LCC 3 "O3'" ? ? ? 1_555 A LCG 4 P ? ? A LCC 3 A LCG 4 1_555 ? ? ? ? ? ? ? 1.632 ? ? covale4 covale both ? A LCG 4 "O3'" ? ? ? 1_555 A A 5 P ? ? A LCG 4 A A 5 1_555 ? ? ? ? ? ? ? 1.571 ? ? covale5 covale both ? B TLN 1 "O3'" ? ? ? 1_555 B LCC 2 P ? ? B TLN 1 B LCC 2 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale6 covale both ? B LCC 2 "O3'" ? ? ? 1_555 B LCC 3 P ? ? B LCC 2 B LCC 3 1_555 ? ? ? ? ? ? ? 1.617 ? ? covale7 covale both ? B LCC 3 "O3'" ? ? ? 1_555 B LCG 4 P ? ? B LCC 3 B LCG 4 1_555 ? ? ? ? ? ? ? 1.564 ? ? covale8 covale both ? B LCG 4 "O3'" ? ? ? 1_555 B A 5 P ? ? B LCG 4 B A 5 1_555 ? ? ? ? ? ? ? 1.619 ? ? covale9 covale both ? C TLN 1 "O3'" ? ? ? 1_555 C LCC 2 P ? ? C TLN 1 C LCC 2 1_555 ? ? ? ? ? ? ? 1.594 ? ? covale10 covale both ? C LCC 2 "O3'" ? ? ? 1_555 C LCC 3 P ? ? C LCC 2 C LCC 3 1_555 ? ? ? ? ? ? ? 1.637 ? ? covale11 covale both ? C LCC 3 "O3'" ? ? ? 1_555 C LCG 4 P ? ? C LCC 3 C LCG 4 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale12 covale both ? C LCG 4 "O3'" ? ? ? 1_555 C A 5 P ? ? C LCG 4 C A 5 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale13 covale both ? D TLN 1 "O3'" ? ? ? 1_555 D LCC 2 P ? ? D TLN 1 D LCC 2 1_555 ? ? ? ? ? ? ? 1.577 ? ? covale14 covale both ? D LCC 2 "O3'" ? ? ? 1_555 D LCC 3 P ? ? D LCC 2 D LCC 3 1_555 ? ? ? ? ? ? ? 1.588 ? ? covale15 covale both ? D LCC 3 "O3'" ? ? ? 1_555 D LCG 4 P ? ? D LCC 3 D LCG 4 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale16 covale both ? D LCG 4 "O3'" ? ? ? 1_555 D A 5 P ? ? D LCG 4 D A 5 1_555 ? ? ? ? ? ? ? 1.595 ? ? hydrog1 hydrog ? ? A LCG 4 N1 ? ? ? 1_555 B C 13 N3 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A LCG 4 N2 ? ? ? 1_555 B C 13 O2 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A LCG 4 O6 ? ? ? 1_555 B C 13 N4 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 12 N3 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 12 O4 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 9 N1 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 9 N6 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 9 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 9 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 11 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 11 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 11 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 N3 ? ? ? 1_555 B LCG 4 N1 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 13 N4 ? ? ? 1_555 B LCG 4 O6 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 13 O2 ? ? ? 1_555 B LCG 4 N2 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C LCG 4 N1 ? ? ? 1_555 D C 13 N3 ? ? C LCG 4 D C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C LCG 4 N2 ? ? ? 1_555 D C 13 O2 ? ? C LCG 4 D C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C LCG 4 O6 ? ? ? 1_555 D C 13 N4 ? ? C LCG 4 D C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C A 5 N1 ? ? ? 1_555 D U 12 N3 ? ? C A 5 D U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C A 5 N6 ? ? ? 1_555 D U 12 O4 ? ? C A 5 D U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C C 6 N3 ? ? ? 1_555 D G 11 N1 ? ? C C 6 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C C 6 N4 ? ? ? 1_555 D G 11 O6 ? ? C C 6 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C C 6 O2 ? ? ? 1_555 D G 11 N2 ? ? C C 6 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C U 7 N3 ? ? ? 1_555 D A 10 N1 ? ? C U 7 D A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C U 7 O4 ? ? ? 1_555 D A 10 N6 ? ? C U 7 D A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C U 8 N3 ? ? ? 1_555 D A 9 N1 ? ? C U 8 D A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C U 8 O4 ? ? ? 1_555 D A 9 N6 ? ? C U 8 D A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C A 9 N1 ? ? ? 1_555 D U 8 N3 ? ? C A 9 D U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C A 9 N6 ? ? ? 1_555 D U 8 O4 ? ? C A 9 D U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C A 10 N1 ? ? ? 1_555 D U 7 N3 ? ? C A 10 D U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C A 10 N6 ? ? ? 1_555 D U 7 O4 ? ? C A 10 D U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C G 11 N1 ? ? ? 1_555 D C 6 N3 ? ? C G 11 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C G 11 N2 ? ? ? 1_555 D C 6 O2 ? ? C G 11 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C G 11 O6 ? ? ? 1_555 D C 6 N4 ? ? C G 11 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C U 12 N3 ? ? ? 1_555 D A 5 N1 ? ? C U 12 D A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C U 12 O4 ? ? ? 1_555 D A 5 N6 ? ? C U 12 D A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C C 13 N3 ? ? ? 1_555 D LCG 4 N1 ? ? C C 13 D LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C C 13 N4 ? ? ? 1_555 D LCG 4 O6 ? ? C C 13 D LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C C 13 O2 ? ? ? 1_555 D LCG 4 N2 ? ? C C 13 D LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 8SY1 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.022906 _atom_sites.fract_transf_matrix[1][2] 0.013225 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026450 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012327 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TLN 1 1 1 TLN TLN A . n A 1 2 LCC 2 2 2 LCC LCC A . n A 1 3 LCC 3 3 3 LCC LCC A . n A 1 4 LCG 4 4 4 LCG LCG A . n A 1 5 A 5 5 5 A A A . n A 1 6 C 6 6 6 C C A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 G 14 14 14 G G A . n B 1 1 TLN 1 1 1 TLN TLN B . n B 1 2 LCC 2 2 2 LCC LCC B . n B 1 3 LCC 3 3 3 LCC LCC B . n B 1 4 LCG 4 4 4 LCG LCG B . n B 1 5 A 5 5 5 A A B . n B 1 6 C 6 6 6 C C B . n B 1 7 U 7 7 7 U U B . n B 1 8 U 8 8 8 U U B . n B 1 9 A 9 9 9 A A B . n B 1 10 A 10 10 10 A A B . n B 1 11 G 11 11 11 G G B . n B 1 12 U 12 12 12 U U B . n B 1 13 C 13 13 13 C C B . n B 1 14 G 14 14 14 G G B . n C 1 1 TLN 1 1 1 TLN TLN C . n C 1 2 LCC 2 2 2 LCC LCC C . n C 1 3 LCC 3 3 3 LCC LCC C . n C 1 4 LCG 4 4 4 LCG LCG C . n C 1 5 A 5 5 5 A A C . n C 1 6 C 6 6 6 C C C . n C 1 7 U 7 7 7 U U C . n C 1 8 U 8 8 8 U U C . n C 1 9 A 9 9 9 A A C . n C 1 10 A 10 10 10 A A C . n C 1 11 G 11 11 11 G G C . n C 1 12 U 12 12 12 U U C . n C 1 13 C 13 13 13 C C C . n C 1 14 G 14 14 14 G G C . n D 1 1 TLN 1 1 1 TLN TLN D . n D 1 2 LCC 2 2 2 LCC LCC D . n D 1 3 LCC 3 3 3 LCC LCC D . n D 1 4 LCG 4 4 4 LCG LCG D . n D 1 5 A 5 5 5 A A D . n D 1 6 C 6 6 6 C C D . n D 1 7 U 7 7 7 U U D . n D 1 8 U 8 8 8 U U D . n D 1 9 A 9 9 9 A A D . n D 1 10 A 10 10 10 A A D . n D 1 11 G 11 11 11 G G D . n D 1 12 U 12 12 12 U U D . n D 1 13 C 13 13 13 C C D . n D 1 14 G 14 14 14 G G D . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email wz15@iu.edu _pdbx_contact_author.name_first Wen _pdbx_contact_author.name_last Zhang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4811-4384 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 WZW 1 101 15 WZW GMA B . F 2 WZW 1 102 15 WZW GMA B . G 2 WZW 1 101 15 WZW GMA C . H 2 WZW 1 101 15 WZW GMA D . I 3 HOH 1 101 48 HOH HOH A . I 3 HOH 2 102 33 HOH HOH A . I 3 HOH 3 103 31 HOH HOH A . I 3 HOH 4 104 35 HOH HOH A . I 3 HOH 5 105 32 HOH HOH A . I 3 HOH 6 106 7 HOH HOH A . I 3 HOH 7 107 28 HOH HOH A . I 3 HOH 8 108 25 HOH HOH A . I 3 HOH 9 109 26 HOH HOH A . I 3 HOH 10 110 8 HOH HOH A . I 3 HOH 11 111 3 HOH HOH A . I 3 HOH 12 112 52 HOH HOH A . J 3 HOH 1 201 49 HOH HOH B . J 3 HOH 2 202 51 HOH HOH B . J 3 HOH 3 203 36 HOH HOH B . J 3 HOH 4 204 27 HOH HOH B . J 3 HOH 5 205 6 HOH HOH B . J 3 HOH 6 206 47 HOH HOH B . J 3 HOH 7 207 34 HOH HOH B . J 3 HOH 8 208 4 HOH HOH B . J 3 HOH 9 209 24 HOH HOH B . J 3 HOH 10 210 50 HOH HOH B . J 3 HOH 11 211 46 HOH HOH B . J 3 HOH 12 212 29 HOH HOH B . K 3 HOH 1 201 39 HOH HOH C . K 3 HOH 2 202 23 HOH HOH C . K 3 HOH 3 203 54 HOH HOH C . K 3 HOH 4 204 1 HOH HOH C . K 3 HOH 5 205 14 HOH HOH C . K 3 HOH 6 206 18 HOH HOH C . K 3 HOH 7 207 20 HOH HOH C . K 3 HOH 8 208 15 HOH HOH C . K 3 HOH 9 209 42 HOH HOH C . K 3 HOH 10 210 17 HOH HOH C . K 3 HOH 11 211 22 HOH HOH C . K 3 HOH 12 212 2 HOH HOH C . K 3 HOH 13 213 40 HOH HOH C . K 3 HOH 14 214 55 HOH HOH C . K 3 HOH 15 215 12 HOH HOH C . K 3 HOH 16 216 44 HOH HOH C . K 3 HOH 17 217 45 HOH HOH C . K 3 HOH 18 218 41 HOH HOH C . K 3 HOH 19 219 56 HOH HOH C . K 3 HOH 20 220 37 HOH HOH C . L 3 HOH 1 201 62 HOH HOH D . L 3 HOH 2 202 38 HOH HOH D . L 3 HOH 3 203 60 HOH HOH D . L 3 HOH 4 204 5 HOH HOH D . L 3 HOH 5 205 43 HOH HOH D . L 3 HOH 6 206 61 HOH HOH D . L 3 HOH 7 207 57 HOH HOH D . L 3 HOH 8 208 30 HOH HOH D . L 3 HOH 9 209 53 HOH HOH D . L 3 HOH 10 210 59 HOH HOH D . L 3 HOH 11 211 58 HOH HOH D . L 3 HOH 12 212 10 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,I,J 2 1 C,D,G,H,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3110 ? 1 MORE 11 ? 1 'SSA (A^2)' 5700 ? 2 'ABSA (A^2)' 3160 ? 2 MORE 13 ? 2 'SSA (A^2)' 5590 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 103 ? I HOH . 2 1 A HOH 105 ? I HOH . 3 1 A HOH 108 ? I HOH . 4 1 B HOH 203 ? J HOH . 5 1 B HOH 206 ? J HOH . 6 1 C HOH 207 ? K HOH . 7 1 C HOH 213 ? K HOH . 8 1 C HOH 218 ? K HOH . 9 1 C HOH 220 ? K HOH . 10 1 D HOH 208 ? L HOH . 11 1 D HOH 211 ? L HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-05-31 2 'Structure model' 1 1 2023-10-25 3 'Structure model' 1 2 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Refinement description' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' pdbx_initial_refinement_model 4 3 'Structure model' citation 5 3 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_initial_refinement_model.details' 2 3 'Structure model' '_citation.country' 3 3 'Structure model' '_citation.journal_abbrev' 4 3 'Structure model' '_citation.journal_id_CSD' 5 3 'Structure model' '_citation.journal_id_ISSN' 6 3 'Structure model' '_citation.journal_volume' 7 3 'Structure model' '_citation.page_first' 8 3 'Structure model' '_citation.page_last' 9 3 'Structure model' '_citation.pdbx_database_id_DOI' 10 3 'Structure model' '_citation.pdbx_database_id_PubMed' 11 3 'Structure model' '_citation.title' 12 3 'Structure model' '_citation.year' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0267 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 8SY1 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C4'" C G 11 ? ? "C3'" C G 11 ? ? "C2'" C G 11 ? ? 96.40 102.60 -6.20 1.00 N 2 1 "C4'" C G 14 ? ? "C3'" C G 14 ? ? "C2'" C G 14 ? ? 96.52 102.60 -6.08 1.00 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 B WZW 102 ? N1C ? F WZW 1 N1C 2 1 N 1 B WZW 102 ? C1C ? F WZW 1 C1C 3 1 N 1 B WZW 102 ? N3C ? F WZW 1 N3C 4 1 N 1 B WZW 102 ? C3C ? F WZW 1 C3C 5 1 N 1 B WZW 102 ? C2C ? F WZW 1 C2C 6 1 N 1 B WZW 102 ? N2C ? F WZW 1 N2C 7 1 N 1 B WZW 102 ? PG ? F WZW 1 PG 8 1 N 1 B WZW 102 ? O2G ? F WZW 1 O2G 9 1 N 1 B WZW 102 ? O1G ? F WZW 1 O1G 10 1 N 1 B WZW 102 ? O5E ? F WZW 1 O5E 11 1 N 1 B WZW 102 ? C5E ? F WZW 1 C5E 12 1 N 1 B WZW 102 ? C4E ? F WZW 1 C4E 13 1 N 1 B WZW 102 ? O4E ? F WZW 1 O4E 14 1 N 1 B WZW 102 ? C3E ? F WZW 1 C3E 15 1 N 1 B WZW 102 ? O3E ? F WZW 1 O3E 16 1 N 1 B WZW 102 ? C2E ? F WZW 1 C2E 17 1 N 1 B WZW 102 ? O2E ? F WZW 1 O2E 18 1 N 1 B WZW 102 ? C1E ? F WZW 1 C1E 19 1 N 1 B WZW 102 ? N9B ? F WZW 1 N9B 20 1 N 1 B WZW 102 ? C8B ? F WZW 1 C8B 21 1 N 1 B WZW 102 ? N7B ? F WZW 1 N7B 22 1 N 1 B WZW 102 ? C5B ? F WZW 1 C5B 23 1 N 1 B WZW 102 ? C4B ? F WZW 1 C4B 24 1 N 1 B WZW 102 ? N3B ? F WZW 1 N3B 25 1 N 1 B WZW 102 ? C2B ? F WZW 1 C2B 26 1 N 1 B WZW 102 ? N1B ? F WZW 1 N1B 27 1 N 1 B WZW 102 ? C6B ? F WZW 1 C6B 28 1 N 1 B WZW 102 ? N6B ? F WZW 1 N6B 29 1 N 1 D WZW 101 ? N1C ? H WZW 1 N1C 30 1 N 1 D WZW 101 ? C1C ? H WZW 1 C1C 31 1 N 1 D WZW 101 ? N3C ? H WZW 1 N3C 32 1 N 1 D WZW 101 ? C3C ? H WZW 1 C3C 33 1 N 1 D WZW 101 ? C2C ? H WZW 1 C2C 34 1 N 1 D WZW 101 ? N2C ? H WZW 1 N2C 35 1 N 1 D WZW 101 ? PG ? H WZW 1 PG 36 1 N 1 D WZW 101 ? O2G ? H WZW 1 O2G 37 1 N 1 D WZW 101 ? O1G ? H WZW 1 O1G 38 1 N 1 D WZW 101 ? O5E ? H WZW 1 O5E 39 1 N 1 D WZW 101 ? C5E ? H WZW 1 C5E 40 1 N 1 D WZW 101 ? C4E ? H WZW 1 C4E 41 1 N 1 D WZW 101 ? O4E ? H WZW 1 O4E 42 1 N 1 D WZW 101 ? C3E ? H WZW 1 C3E 43 1 N 1 D WZW 101 ? O3E ? H WZW 1 O3E 44 1 N 1 D WZW 101 ? C2E ? H WZW 1 C2E 45 1 N 1 D WZW 101 ? O2E ? H WZW 1 O2E 46 1 N 1 D WZW 101 ? C1E ? H WZW 1 C1E 47 1 N 1 D WZW 101 ? N9B ? H WZW 1 N9B 48 1 N 1 D WZW 101 ? C8B ? H WZW 1 C8B 49 1 N 1 D WZW 101 ? N7B ? H WZW 1 N7B 50 1 N 1 D WZW 101 ? C5B ? H WZW 1 C5B 51 1 N 1 D WZW 101 ? C4B ? H WZW 1 C4B 52 1 N 1 D WZW 101 ? N3B ? H WZW 1 N3B 53 1 N 1 D WZW 101 ? C2B ? H WZW 1 C2B 54 1 N 1 D WZW 101 ? N1B ? H WZW 1 N1B 55 1 N 1 D WZW 101 ? C6B ? H WZW 1 C6B 56 1 N 1 D WZW 101 ? N6B ? H WZW 1 N6B # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 LCC "O5'" O N N 114 LCC "C5'" C N N 115 LCC "C4'" C N R 116 LCC "O4'" O N N 117 LCC "C1'" C N R 118 LCC N1 N N N 119 LCC C6 C N N 120 LCC C5 C N N 121 LCC C5M C N N 122 LCC C4 C N N 123 LCC N4 N N N 124 LCC N3 N N N 125 LCC C2 C N N 126 LCC O2 O N N 127 LCC "C3'" C N S 128 LCC "C2'" C N R 129 LCC "O2'" O N N 130 LCC "O3'" O N N 131 LCC "C6'" C N N 132 LCC P P N N 133 LCC O1P O N N 134 LCC O2P O N N 135 LCC OXT O N N 136 LCC "H5'1" H N N 137 LCC "H5'2" H N N 138 LCC "H1'" H N N 139 LCC H6 H N N 140 LCC H5M1 H N N 141 LCC H5M2 H N N 142 LCC H5M3 H N N 143 LCC H41 H N N 144 LCC H42 H N N 145 LCC "H3'" H N N 146 LCC "H2'1" H N N 147 LCC H3T H N N 148 LCC "H6'1" H N N 149 LCC "H6'2" H N N 150 LCC H1P H N N 151 LCC HXT H N N 152 LCG P P N N 153 LCG OP1 O N N 154 LCG "O5'" O N N 155 LCG "C5'" C N N 156 LCG "C3'" C N S 157 LCG "C6'" C N N 158 LCG N9 N Y N 159 LCG C8 C Y N 160 LCG C4 C Y N 161 LCG N7 N Y N 162 LCG C5 C Y N 163 LCG C6 C N N 164 LCG "C2'" C N R 165 LCG O6 O N N 166 LCG "C4'" C N R 167 LCG "C1'" C N R 168 LCG C2 C N N 169 LCG N1 N N N 170 LCG "O4'" O N N 171 LCG OP2 O N N 172 LCG N2 N N N 173 LCG N3 N N N 174 LCG "O2'" O N N 175 LCG "O3'" O N N 176 LCG OP3 O N N 177 LCG "H5'" H N N 178 LCG "H5''" H N N 179 LCG "H3'" H N N 180 LCG "H6'1" H N N 181 LCG "H6'2" H N N 182 LCG H8 H N N 183 LCG "H2'" H N N 184 LCG "H1'" H N N 185 LCG H1 H N N 186 LCG HOP2 H N N 187 LCG H21 H N N 188 LCG H22 H N N 189 LCG "HO3'" H N N 190 LCG HOP3 H N N 191 TLN P P N N 192 TLN OP1 O N N 193 TLN OP2 O N N 194 TLN OP3 O N N 195 TLN "O5'" O N N 196 TLN "C5'" C N N 197 TLN "C4'" C N R 198 TLN "O4'" O N N 199 TLN "C1'" C N R 200 TLN N1 N N N 201 TLN C6 C N N 202 TLN C5 C N N 203 TLN C5M C N N 204 TLN C4 C N N 205 TLN O4 O N N 206 TLN N3 N N N 207 TLN C2 C N N 208 TLN O2 O N N 209 TLN "C3'" C N S 210 TLN "C2'" C N R 211 TLN "O2'" O N N 212 TLN "O3'" O N N 213 TLN "C6'" C N N 214 TLN HOP2 H N N 215 TLN HOP3 H N N 216 TLN "H5'" H N N 217 TLN "H5''" H N N 218 TLN "H1'" H N N 219 TLN H6 H N N 220 TLN H71 H N N 221 TLN H72 H N N 222 TLN H73 H N N 223 TLN H3 H N N 224 TLN "H3'" H N N 225 TLN "H2'" H N N 226 TLN "HO3'" H N N 227 TLN "H6'1" H N N 228 TLN "H6'2" H N N 229 U OP3 O N N 230 U P P N N 231 U OP1 O N N 232 U OP2 O N N 233 U "O5'" O N N 234 U "C5'" C N N 235 U "C4'" C N R 236 U "O4'" O N N 237 U "C3'" C N S 238 U "O3'" O N N 239 U "C2'" C N R 240 U "O2'" O N N 241 U "C1'" C N R 242 U N1 N N N 243 U C2 C N N 244 U O2 O N N 245 U N3 N N N 246 U C4 C N N 247 U O4 O N N 248 U C5 C N N 249 U C6 C N N 250 U HOP3 H N N 251 U HOP2 H N N 252 U "H5'" H N N 253 U "H5''" H N N 254 U "H4'" H N N 255 U "H3'" H N N 256 U "HO3'" H N N 257 U "H2'" H N N 258 U "HO2'" H N N 259 U "H1'" H N N 260 U H3 H N N 261 U H5 H N N 262 U H6 H N N 263 WZW O6A O N N 264 WZW C6A C N N 265 WZW N1A N N N 266 WZW C2A C N N 267 WZW N2A N N N 268 WZW N3A N N N 269 WZW C4A C Y N 270 WZW C5A C Y N 271 WZW N7A N Y N 272 WZW C8A C Y N 273 WZW N9A N Y N 274 WZW C1D C N R 275 WZW O4D O N N 276 WZW C2D C N R 277 WZW O2D O N N 278 WZW C3D C N S 279 WZW O3D O N N 280 WZW C4D C N R 281 WZW C5D C N N 282 WZW O5D O N N 283 WZW PA P N N 284 WZW O1A O N N 285 WZW O2A O N N 286 WZW N1C N Y N 287 WZW C1C C Y N 288 WZW N3C N N N 289 WZW C3C C Y N 290 WZW C2C C Y N 291 WZW N2C N Y N 292 WZW PG P N N 293 WZW O2G O N N 294 WZW O1G O N N 295 WZW O5E O N N 296 WZW C5E C N N 297 WZW C4E C N R 298 WZW O4E O N N 299 WZW C3E C N S 300 WZW O3E O N N 301 WZW C2E C N R 302 WZW O2E O N N 303 WZW C1E C N R 304 WZW N9B N Y N 305 WZW C8B C Y N 306 WZW N7B N Y N 307 WZW C5B C Y N 308 WZW C4B C Y N 309 WZW N3B N Y N 310 WZW C2B C Y N 311 WZW N1B N Y N 312 WZW C6B C Y N 313 WZW N6B N N N 314 WZW H1 H N N 315 WZW H2 H N N 316 WZW H3 H N N 317 WZW H4 H N N 318 WZW H5 H N N 319 WZW H6 H N N 320 WZW H7 H N N 321 WZW H8 H N N 322 WZW H9 H N N 323 WZW H10 H N N 324 WZW H11 H N N 325 WZW H12 H N N 326 WZW H13 H N N 327 WZW H14 H N N 328 WZW H15 H N N 329 WZW H16 H N N 330 WZW H17 H N N 331 WZW H18 H N N 332 WZW H19 H N N 333 WZW H20 H N N 334 WZW H21 H N N 335 WZW H22 H N N 336 WZW H23 H N N 337 WZW H24 H N N 338 WZW H25 H N N 339 WZW H26 H N N 340 WZW H27 H N N 341 WZW H28 H N N 342 WZW H29 H N N 343 WZW H30 H N N 344 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 LCC "O5'" "C5'" sing N N 118 LCC "O5'" P sing N N 119 LCC "C5'" "C4'" sing N N 120 LCC "C5'" "H5'1" sing N N 121 LCC "C5'" "H5'2" sing N N 122 LCC "C4'" "O4'" sing N N 123 LCC "C4'" "C3'" sing N N 124 LCC "C4'" "C6'" sing N N 125 LCC "O4'" "C1'" sing N N 126 LCC "C1'" N1 sing N N 127 LCC "C1'" "C2'" sing N N 128 LCC "C1'" "H1'" sing N N 129 LCC N1 C6 sing N N 130 LCC N1 C2 sing N N 131 LCC C6 C5 doub N N 132 LCC C6 H6 sing N N 133 LCC C5 C5M sing N N 134 LCC C5 C4 sing N N 135 LCC C5M H5M1 sing N N 136 LCC C5M H5M2 sing N N 137 LCC C5M H5M3 sing N N 138 LCC C4 N4 sing N N 139 LCC C4 N3 doub N N 140 LCC N4 H41 sing N N 141 LCC N4 H42 sing N N 142 LCC N3 C2 sing N N 143 LCC C2 O2 doub N N 144 LCC "C3'" "C2'" sing N N 145 LCC "C3'" "O3'" sing N N 146 LCC "C3'" "H3'" sing N N 147 LCC "C2'" "O2'" sing N N 148 LCC "C2'" "H2'1" sing N N 149 LCC "O2'" "C6'" sing N N 150 LCC "O3'" H3T sing N N 151 LCC "C6'" "H6'1" sing N N 152 LCC "C6'" "H6'2" sing N N 153 LCC P O1P sing N N 154 LCC P O2P doub N N 155 LCC P OXT sing N N 156 LCC O1P H1P sing N N 157 LCC OXT HXT sing N N 158 LCG P OP1 doub N N 159 LCG P "O5'" sing N N 160 LCG P OP2 sing N N 161 LCG P OP3 sing N N 162 LCG "O5'" "C5'" sing N N 163 LCG "C5'" "C4'" sing N N 164 LCG "C5'" "H5'" sing N N 165 LCG "C5'" "H5''" sing N N 166 LCG "C3'" "C2'" sing N N 167 LCG "C3'" "C4'" sing N N 168 LCG "C3'" "O3'" sing N N 169 LCG "C3'" "H3'" sing N N 170 LCG "C6'" "C4'" sing N N 171 LCG "C6'" "O2'" sing N N 172 LCG "C6'" "H6'1" sing N N 173 LCG "C6'" "H6'2" sing N N 174 LCG N9 C8 sing Y N 175 LCG N9 C4 sing Y N 176 LCG N9 "C1'" sing N N 177 LCG C8 N7 doub Y N 178 LCG C8 H8 sing N N 179 LCG C4 C5 doub Y N 180 LCG C4 N3 sing N N 181 LCG N7 C5 sing Y N 182 LCG C5 C6 sing N N 183 LCG C6 O6 doub N N 184 LCG C6 N1 sing N N 185 LCG "C2'" "C1'" sing N N 186 LCG "C2'" "O2'" sing N N 187 LCG "C2'" "H2'" sing N N 188 LCG "C4'" "O4'" sing N N 189 LCG "C1'" "O4'" sing N N 190 LCG "C1'" "H1'" sing N N 191 LCG C2 N1 sing N N 192 LCG C2 N2 sing N N 193 LCG C2 N3 doub N N 194 LCG N1 H1 sing N N 195 LCG OP2 HOP2 sing N N 196 LCG N2 H21 sing N N 197 LCG N2 H22 sing N N 198 LCG "O3'" "HO3'" sing N N 199 LCG OP3 HOP3 sing N N 200 TLN P OP1 doub N N 201 TLN P OP2 sing N N 202 TLN P OP3 sing N N 203 TLN P "O5'" sing N N 204 TLN OP2 HOP2 sing N N 205 TLN OP3 HOP3 sing N N 206 TLN "O5'" "C5'" sing N N 207 TLN "C5'" "C4'" sing N N 208 TLN "C5'" "H5'" sing N N 209 TLN "C5'" "H5''" sing N N 210 TLN "C4'" "O4'" sing N N 211 TLN "C4'" "C3'" sing N N 212 TLN "C4'" "C6'" sing N N 213 TLN "O4'" "C1'" sing N N 214 TLN "C1'" N1 sing N N 215 TLN "C1'" "C2'" sing N N 216 TLN "C1'" "H1'" sing N N 217 TLN N1 C6 sing N N 218 TLN N1 C2 sing N N 219 TLN C6 C5 doub N N 220 TLN C6 H6 sing N N 221 TLN C5 C5M sing N N 222 TLN C5 C4 sing N N 223 TLN C5M H71 sing N N 224 TLN C5M H72 sing N N 225 TLN C5M H73 sing N N 226 TLN C4 O4 doub N N 227 TLN C4 N3 sing N N 228 TLN N3 C2 sing N N 229 TLN N3 H3 sing N N 230 TLN C2 O2 doub N N 231 TLN "C3'" "C2'" sing N N 232 TLN "C3'" "O3'" sing N N 233 TLN "C3'" "H3'" sing N N 234 TLN "C2'" "O2'" sing N N 235 TLN "C2'" "H2'" sing N N 236 TLN "O2'" "C6'" sing N N 237 TLN "O3'" "HO3'" sing N N 238 TLN "C6'" "H6'1" sing N N 239 TLN "C6'" "H6'2" sing N N 240 U OP3 P sing N N 241 U OP3 HOP3 sing N N 242 U P OP1 doub N N 243 U P OP2 sing N N 244 U P "O5'" sing N N 245 U OP2 HOP2 sing N N 246 U "O5'" "C5'" sing N N 247 U "C5'" "C4'" sing N N 248 U "C5'" "H5'" sing N N 249 U "C5'" "H5''" sing N N 250 U "C4'" "O4'" sing N N 251 U "C4'" "C3'" sing N N 252 U "C4'" "H4'" sing N N 253 U "O4'" "C1'" sing N N 254 U "C3'" "O3'" sing N N 255 U "C3'" "C2'" sing N N 256 U "C3'" "H3'" sing N N 257 U "O3'" "HO3'" sing N N 258 U "C2'" "O2'" sing N N 259 U "C2'" "C1'" sing N N 260 U "C2'" "H2'" sing N N 261 U "O2'" "HO2'" sing N N 262 U "C1'" N1 sing N N 263 U "C1'" "H1'" sing N N 264 U N1 C2 sing N N 265 U N1 C6 sing N N 266 U C2 O2 doub N N 267 U C2 N3 sing N N 268 U N3 C4 sing N N 269 U N3 H3 sing N N 270 U C4 O4 doub N N 271 U C4 C5 sing N N 272 U C5 C6 doub N N 273 U C5 H5 sing N N 274 U C6 H6 sing N N 275 WZW N2A C2A sing N N 276 WZW N1A C2A sing N N 277 WZW N1A C6A sing N N 278 WZW C2A N3A doub N N 279 WZW O6A C6A doub N N 280 WZW N3A C4A sing N N 281 WZW C6A C5A sing N N 282 WZW C4A C5A doub Y N 283 WZW C4A N9A sing Y N 284 WZW C5A N7A sing Y N 285 WZW N9A C1D sing N N 286 WZW N9A C8A sing Y N 287 WZW N7A C8A doub Y N 288 WZW C1D O4D sing N N 289 WZW C1D C2D sing N N 290 WZW O2D C2D sing N N 291 WZW O4D C4D sing N N 292 WZW C2D C3D sing N N 293 WZW C4D C5D sing N N 294 WZW C4D C3D sing N N 295 WZW C2B N1B doub Y N 296 WZW C2B N3B sing Y N 297 WZW N1B C6B sing Y N 298 WZW N3B C4B doub Y N 299 WZW C6B N6B sing N N 300 WZW C6B C5B doub Y N 301 WZW C4B C5B sing Y N 302 WZW C4B N9B sing Y N 303 WZW C5B N7B sing Y N 304 WZW C5D O5D sing N N 305 WZW C3D O3D sing N N 306 WZW O4E C1E sing N N 307 WZW O4E C4E sing N N 308 WZW O5D PA sing N N 309 WZW N9B C1E sing N N 310 WZW N9B C8B sing Y N 311 WZW C1E C2E sing N N 312 WZW N7B C8B doub Y N 313 WZW O1A PA doub N N 314 WZW C4E C5E sing N N 315 WZW C4E C3E sing N N 316 WZW C2E O2E sing N N 317 WZW C2E C3E sing N N 318 WZW PA O2A sing N N 319 WZW PA N1C sing N N 320 WZW N3C C1C sing N N 321 WZW C5E O5E sing N N 322 WZW N1C C1C sing Y N 323 WZW N1C C3C sing Y N 324 WZW C3E O3E sing N N 325 WZW C1C N2C doub Y N 326 WZW O5E PG sing N N 327 WZW C3C C2C doub Y N 328 WZW N2C PG sing N N 329 WZW N2C C2C sing Y N 330 WZW O1G PG doub N N 331 WZW PG O2G sing N N 332 WZW N1A H1 sing N N 333 WZW N2A H2 sing N N 334 WZW N2A H3 sing N N 335 WZW C8A H4 sing N N 336 WZW C1D H5 sing N N 337 WZW C2D H6 sing N N 338 WZW O2D H7 sing N N 339 WZW C3D H8 sing N N 340 WZW O3D H9 sing N N 341 WZW C4D H10 sing N N 342 WZW C5D H11 sing N N 343 WZW C5D H12 sing N N 344 WZW O2A H13 sing N N 345 WZW N3C H14 sing N N 346 WZW N3C H15 sing N N 347 WZW C3C H16 sing N N 348 WZW C2C H17 sing N N 349 WZW O2G H18 sing N N 350 WZW C5E H19 sing N N 351 WZW C5E H20 sing N N 352 WZW C4E H21 sing N N 353 WZW C3E H22 sing N N 354 WZW O3E H23 sing N N 355 WZW C2E H24 sing N N 356 WZW O2E H25 sing N N 357 WZW C1E H26 sing N N 358 WZW C8B H27 sing N N 359 WZW C2B H28 sing N N 360 WZW N6B H29 sing N N 361 WZW N6B H30 sing N N 362 # _ndb_struct_conf_na.entry_id 8SY1 _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A LCG 4 1_555 B C 13 1_555 -0.051 0.006 0.040 -1.816 -16.825 2.484 1 A_LCG4:C13_B A 4 ? B 13 ? 19 1 1 A A 5 1_555 B U 12 1_555 0.146 -0.198 0.237 5.950 -16.176 -2.933 2 A_A5:U12_B A 5 ? B 12 ? 20 1 1 A C 6 1_555 B G 11 1_555 0.496 0.024 -0.236 6.329 -19.205 0.753 3 A_C6:G11_B A 6 ? B 11 ? 19 1 1 A U 7 1_555 B A 10 1_555 -0.309 -0.135 0.521 -5.464 -15.045 2.643 4 A_U7:A10_B A 7 ? B 10 ? 20 1 1 A U 8 1_555 B A 9 1_555 -0.218 -0.087 0.208 5.937 -12.923 0.667 5 A_U8:A9_B A 8 ? B 9 ? 20 1 1 A A 9 1_555 B U 8 1_555 -0.169 -0.061 0.193 4.818 -26.230 7.252 6 A_A9:U8_B A 9 ? B 8 ? 20 1 1 A A 10 1_555 B U 7 1_555 0.400 -0.302 0.263 -7.443 -8.776 -4.731 7 A_A10:U7_B A 10 ? B 7 ? 20 1 1 A G 11 1_555 B C 6 1_555 -0.529 -0.099 0.108 -7.077 -16.581 2.953 8 A_G11:C6_B A 11 ? B 6 ? 19 1 1 A U 12 1_555 B A 5 1_555 -0.014 -0.186 -0.064 -4.215 -8.357 -7.169 9 A_U12:A5_B A 12 ? B 5 ? 20 1 1 A C 13 1_555 B LCG 4 1_555 0.169 -0.199 0.216 -3.322 -11.279 0.291 10 A_C13:LCG4_B A 13 ? B 4 ? 19 1 1 C LCG 4 1_555 D C 13 1_555 -0.712 -0.303 -0.004 -2.176 -14.299 -3.099 11 C_LCG4:C13_D C 4 ? D 13 ? 19 1 1 C A 5 1_555 D U 12 1_555 0.284 -0.114 -0.004 5.701 -9.069 0.151 12 C_A5:U12_D C 5 ? D 12 ? 20 1 1 C C 6 1_555 D G 11 1_555 0.340 -0.054 0.017 8.825 -14.070 7.183 13 C_C6:G11_D C 6 ? D 11 ? 19 1 1 C U 7 1_555 D A 10 1_555 -0.117 -0.013 -0.393 5.787 -14.487 1.511 14 C_U7:A10_D C 7 ? D 10 ? 20 1 1 C U 8 1_555 D A 9 1_555 -0.024 0.045 0.041 -0.411 -6.847 5.678 15 C_U8:A9_D C 8 ? D 9 ? 20 1 1 C A 9 1_555 D U 8 1_555 0.028 -0.218 -0.398 -5.702 -22.243 7.109 16 C_A9:U8_D C 9 ? D 8 ? 20 1 1 C A 10 1_555 D U 7 1_555 -0.318 -0.290 -0.600 -6.103 -18.568 4.157 17 C_A10:U7_D C 10 ? D 7 ? 20 1 1 C G 11 1_555 D C 6 1_555 0.219 -0.169 -0.012 -16.698 -15.572 -0.657 18 C_G11:C6_D C 11 ? D 6 ? 19 1 1 C U 12 1_555 D A 5 1_555 0.133 -0.069 0.338 -8.012 -11.863 0.743 19 C_U12:A5_D C 12 ? D 5 ? 20 1 1 C C 13 1_555 D LCG 4 1_555 0.552 -0.256 -0.403 7.609 -15.650 -0.892 20 C_C13:LCG4_D C 13 ? D 4 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A LCG 4 1_555 B C 13 1_555 A A 5 1_555 B U 12 1_555 -0.160 -1.057 3.174 -1.747 2.027 31.371 -2.311 -0.019 3.106 3.740 3.223 31.482 1 AA_LCG4A5:U12C13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A A 5 1_555 B U 12 1_555 A C 6 1_555 B G 11 1_555 0.537 -1.371 3.322 2.765 5.339 34.229 -3.106 -0.481 3.112 8.985 -4.653 34.737 2 AA_A5C6:G11U12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A C 6 1_555 B G 11 1_555 A U 7 1_555 B A 10 1_555 -0.474 -2.014 3.373 -7.674 11.558 25.643 -6.355 -0.616 2.316 23.938 15.893 29.100 3 AA_C6U7:A10G11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A U 7 1_555 B A 10 1_555 A U 8 1_555 B A 9 1_555 -0.401 -1.346 2.881 0.681 5.957 32.212 -3.253 0.811 2.589 10.621 -1.214 32.750 4 AA_U7U8:A9A10_BB A 7 ? B 10 ? A 8 ? B 9 ? 1 A U 8 1_555 B A 9 1_555 A A 9 1_555 B U 8 1_555 0.666 -1.430 3.209 2.348 18.227 30.010 -4.766 -0.797 2.075 31.734 -4.087 35.080 5 AA_U8A9:U8A9_BB A 8 ? B 9 ? A 9 ? B 8 ? 1 A A 9 1_555 B U 8 1_555 A A 10 1_555 B U 7 1_555 -0.854 -1.414 3.441 -4.127 8.096 36.962 -3.223 0.774 3.147 12.539 6.392 38.025 6 AA_A9A10:U7U8_BB A 9 ? B 8 ? A 10 ? B 7 ? 1 A A 10 1_555 B U 7 1_555 A G 11 1_555 B C 6 1_555 0.559 -1.641 3.214 5.542 5.588 28.113 -4.416 0.040 2.896 11.227 -11.135 29.172 7 AA_A10G11:C6U7_BB A 10 ? B 7 ? A 11 ? B 6 ? 1 A G 11 1_555 B C 6 1_555 A U 12 1_555 B A 5 1_555 -0.356 -1.312 3.276 0.666 7.952 33.385 -3.417 0.704 2.889 13.602 -1.140 34.299 8 AA_G11U12:A5C6_BB A 11 ? B 6 ? A 12 ? B 5 ? 1 A U 12 1_555 B A 5 1_555 A C 13 1_555 B LCG 4 1_555 0.503 -1.120 3.356 -0.554 3.245 32.040 -2.602 -1.007 3.221 5.860 1.000 32.204 9 AA_U12C13:LCG4A5_BB A 12 ? B 5 ? A 13 ? B 4 ? 1 C LCG 4 1_555 D C 13 1_555 C A 5 1_555 D U 12 1_555 0.278 -1.031 3.047 1.007 5.653 35.240 -2.426 -0.321 2.859 9.260 -1.650 35.691 10 CC_LCG4A5:U12C13_DD C 4 ? D 13 ? C 5 ? D 12 ? 1 C A 5 1_555 D U 12 1_555 C C 6 1_555 D G 11 1_555 0.588 -1.401 3.062 1.476 7.414 32.494 -3.544 -0.806 2.708 13.030 -2.594 33.339 11 CC_A5C6:G11U12_DD C 5 ? D 12 ? C 6 ? D 11 ? 1 C C 6 1_555 D G 11 1_555 C U 7 1_555 D A 10 1_555 -0.870 -1.683 3.414 -0.836 8.610 27.171 -5.332 1.583 2.785 17.765 1.725 28.490 12 CC_C6U7:A10G11_DD C 6 ? D 11 ? C 7 ? D 10 ? 1 C U 7 1_555 D A 10 1_555 C U 8 1_555 D A 9 1_555 0.087 -1.257 3.534 -6.242 11.530 32.984 -3.792 -1.077 2.885 19.381 10.492 35.426 13 CC_U7U8:A9A10_DD C 7 ? D 10 ? C 8 ? D 9 ? 1 C U 8 1_555 D A 9 1_555 C A 9 1_555 D U 8 1_555 0.307 -1.530 3.206 6.301 19.942 30.216 -4.799 0.257 1.898 33.661 -10.635 36.609 14 CC_U8A9:U8A9_DD C 8 ? D 9 ? C 9 ? D 8 ? 1 C A 9 1_555 D U 8 1_555 C A 10 1_555 D U 7 1_555 -0.313 -1.019 3.374 -0.398 6.260 29.503 -3.237 0.520 3.101 12.121 0.770 30.148 15 CC_A9A10:U7U8_DD C 9 ? D 8 ? C 10 ? D 7 ? 1 C A 10 1_555 D U 7 1_555 C G 11 1_555 D C 6 1_555 0.163 -1.410 3.472 -3.318 14.786 36.627 -3.793 -0.625 2.703 22.387 5.024 39.538 16 CC_A10G11:C6U7_DD C 10 ? D 7 ? C 11 ? D 6 ? 1 C G 11 1_555 D C 6 1_555 C U 12 1_555 D A 5 1_555 -0.231 -1.294 3.086 -2.601 1.151 30.018 -2.709 -0.054 3.044 2.215 5.007 30.149 17 CC_G11U12:A5C6_DD C 11 ? D 6 ? C 12 ? D 5 ? 1 C U 12 1_555 D A 5 1_555 C C 13 1_555 D LCG 4 1_555 0.184 -1.008 2.736 6.880 5.616 34.601 -2.310 0.515 2.535 9.255 -11.337 35.689 18 CC_U12C13:LCG4A5_DD C 12 ? D 5 ? C 13 ? D 4 ? # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 WZW ? ? WZW ? ? 'SUBJECT OF INVESTIGATION' ? 2 LCC ? ? LCC ? ? 'SUBJECT OF INVESTIGATION' ? 3 LCG ? ? LCG ? ? 'SUBJECT OF INVESTIGATION' ? 4 TLN ? ? TLN ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-[2-azanyl-3-[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]imidazol-1-yl]phosphinic acid ; WZW 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8SWG _pdbx_initial_refinement_model.details 'PDB entry 8SWG' #