HEADER RNA 24-MAY-23 8SY1 TITLE RNA DUPLEX BOUND WITH IMIDAZOLIUM BRIDGED GA DINUCLEOTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*(TLN)P*(LCC)P*(LCC)P*(LCG) COMPND 3 P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G*(GMA))-3'); COMPND 4 CHAIN: A, B, C, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630 KEYWDS RNA, IMIDAZOLIUM BRIDGED GA DINUCLEOTIDE EXPDTA X-RAY DIFFRACTION AUTHOR W.ZHANG,Y.DANTSU REVDAT 3 13-DEC-23 8SY1 1 JRNL REVDAT 2 25-OCT-23 8SY1 1 REMARK REVDAT 1 31-MAY-23 8SY1 0 JRNL AUTH Y.DANTSU,Y.ZHANG,W.ZHANG JRNL TITL INSIGHT INTO THE STRUCTURES OF UNUSUAL BASE PAIRS IN RNA JRNL TITL 2 COMPLEXES CONTAINING A PRIMER/TEMPLATE/ADENOSINE LIGAND. JRNL REF RSC CHEM BIOL V. 4 942 2023 JRNL REFN ESSN 2633-0679 JRNL PMID 37920395 JRNL DOI 10.1039/D3CB00137G REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 14945 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 795 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1187 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.1190 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.2120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 1196 REMARK 3 HETEROGEN ATOMS : 148 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.092 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1508 ; 0.022 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): 692 ; 0.023 ; 0.024 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2356 ; 2.837 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1622 ; 3.826 ; 3.097 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 266 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 754 ; 0.017 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 268 ; 0.002 ; 0.022 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1508 ; 2.585 ; 2.737 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1505 ; 2.563 ; 2.736 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2354 ; 3.322 ; 4.102 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2091 ; 4.500 ;26.833 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2091 ; 4.500 ;26.832 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8SY1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000274764. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 99 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15744 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.57700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 8SWG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CITRATE TRIBASIC DIHYDRATE, PH 5.6, 1.0 M LITHIUM SULFATE REMARK 280 MONOHYDRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 103 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 105 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 108 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 203 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 206 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 207 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 213 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 218 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 220 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 208 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 211 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G C 11 C4' - C3' - C2' ANGL. DEV. = -6.2 DEGREES REMARK 500 G C 14 C4' - C3' - C2' ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 WZW B 102 REMARK 610 WZW D 101 DBREF 8SY1 A 1 14 PDB 8SY1 8SY1 1 14 DBREF 8SY1 B 1 14 PDB 8SY1 8SY1 1 14 DBREF 8SY1 C 1 14 PDB 8SY1 8SY1 1 14 DBREF 8SY1 D 1 14 PDB 8SY1 8SY1 1 14 SEQRES 1 A 14 TLN LCC LCC LCG A C U U A A G U C SEQRES 2 A 14 G SEQRES 1 B 14 TLN LCC LCC LCG A C U U A A G U C SEQRES 2 B 14 G SEQRES 1 C 14 TLN LCC LCC LCG A C U U A A G U C SEQRES 2 C 14 G SEQRES 1 D 14 TLN LCC LCC LCG A C U U A A G U C SEQRES 2 D 14 G HET TLN A 1 19 HET LCC A 2 22 HET LCC A 3 22 HET LCG A 4 24 HET TLN B 1 19 HET LCC B 2 22 HET LCC B 3 22 HET LCG B 4 24 HET TLN C 1 19 HET LCC C 2 22 HET LCC C 3 22 HET LCG C 4 24 HET TLN D 1 19 HET LCC D 2 22 HET LCC D 3 22 HET LCG D 4 24 HET WZW B 101 51 HET WZW B 102 23 HET WZW C 101 51 HET WZW D 101 23 HETNAM TLN [(1R,3R,4R,7S)-7-HYDROXY-3-(THYMIN-1-YL)-2,5- HETNAM 2 TLN DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 TLN PHOSPHATE HETNAM LCC [(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5- HETNAM 2 LCC DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCC PHOSPHATE HETNAM LCG [(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5- HETNAM 2 LCG DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCG PHOSPHATE HETNAM WZW [(2~{R},3~{S},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-3,4- HETNAM 2 WZW BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-[2-AZANYL-3-[[(2~{R}, HETNAM 3 WZW 3~{S},4~{R},5~{R})-5-(2-AZANYL-6-OXIDANYLIDENE-1~{H}- HETNAM 4 WZW PURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY- HETNAM 5 WZW OXIDANYL-PHOSPHORYL]IMIDAZOL-1-YL]PHOSPHINIC ACID FORMUL 1 TLN 4(C11 H15 N2 O9 P) FORMUL 1 LCC 8(C11 H16 N3 O8 P) FORMUL 1 LCG 4(C11 H14 N5 O8 P) FORMUL 5 WZW 4(C23 H30 N13 O13 P2) FORMUL 9 HOH *56(H2 O) LINK O3' TLN A 1 P LCC A 2 1555 1555 1.67 LINK O3' LCC A 2 P LCC A 3 1555 1555 1.62 LINK O3' LCC A 3 P LCG A 4 1555 1555 1.63 LINK O3' LCG A 4 P A A 5 1555 1555 1.57 LINK O3' TLN B 1 P LCC B 2 1555 1555 1.61 LINK O3' LCC B 2 P LCC B 3 1555 1555 1.62 LINK O3' LCC B 3 P LCG B 4 1555 1555 1.56 LINK O3' LCG B 4 P A B 5 1555 1555 1.62 LINK O3' TLN C 1 P LCC C 2 1555 1555 1.59 LINK O3' LCC C 2 P LCC C 3 1555 1555 1.64 LINK O3' LCC C 3 P LCG C 4 1555 1555 1.61 LINK O3' LCG C 4 P A C 5 1555 1555 1.59 LINK O3' TLN D 1 P LCC D 2 1555 1555 1.58 LINK O3' LCC D 2 P LCC D 3 1555 1555 1.59 LINK O3' LCC D 3 P LCG D 4 1555 1555 1.61 LINK O3' LCG D 4 P A D 5 1555 1555 1.60 CRYST1 43.656 43.656 81.126 90.00 90.00 120.00 P 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022906 0.013225 0.000000 0.00000 SCALE2 0.000000 0.026450 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012327 0.00000 HETATM 1 O5' TLN A 1 48.018 18.861 2.997 1.00 27.33 O HETATM 2 C5' TLN A 1 46.767 19.504 3.025 1.00 27.17 C HETATM 3 C4' TLN A 1 45.849 18.355 3.057 1.00 27.92 C HETATM 4 O4' TLN A 1 46.217 17.556 1.959 1.00 31.45 O HETATM 5 C1' TLN A 1 45.605 16.230 2.184 1.00 28.32 C HETATM 6 N1 TLN A 1 46.582 15.128 2.106 1.00 27.00 N HETATM 7 C6 TLN A 1 47.963 15.451 2.053 1.00 25.67 C HETATM 8 C5 TLN A 1 48.940 14.467 1.912 1.00 25.66 C HETATM 9 C5M TLN A 1 50.308 14.758 1.825 1.00 25.22 C HETATM 10 C4 TLN A 1 48.549 13.159 1.887 1.00 23.36 C HETATM 11 O4 TLN A 1 49.400 12.257 1.788 1.00 25.41 O HETATM 12 N3 TLN A 1 47.133 12.839 1.955 1.00 25.75 N HETATM 13 C2 TLN A 1 46.184 13.831 2.041 1.00 23.93 C HETATM 14 O2 TLN A 1 45.002 13.501 2.111 1.00 24.82 O HETATM 15 C3' TLN A 1 45.910 17.389 4.272 1.00 30.03 C HETATM 16 C2' TLN A 1 44.992 16.465 3.523 1.00 30.61 C HETATM 17 O2' TLN A 1 43.844 17.378 3.311 1.00 29.86 O HETATM 18 O3' TLN A 1 45.187 17.891 5.463 1.00 33.34 O HETATM 19 C6' TLN A 1 44.434 18.746 2.927 1.00 29.19 C HETATM 20 O5' LCC A 2 44.374 15.819 6.679 1.00 27.32 O HETATM 21 C5' LCC A 2 43.054 15.697 6.157 1.00 25.68 C HETATM 22 C4' LCC A 2 42.998 14.191 6.097 1.00 25.57 C HETATM 23 O4' LCC A 2 43.947 13.814 5.074 1.00 29.32 O HETATM 24 C1' LCC A 2 43.941 12.391 5.086 1.00 27.69 C HETATM 25 N1 LCC A 2 45.338 11.970 5.029 1.00 29.39 N HETATM 26 C6 LCC A 2 46.404 12.859 5.292 1.00 29.10 C HETATM 27 C5 LCC A 2 47.717 12.343 5.212 1.00 32.22 C HETATM 28 C5M LCC A 2 48.846 13.172 5.473 1.00 31.43 C HETATM 29 C4 LCC A 2 47.878 11.003 4.864 1.00 34.62 C HETATM 30 N4 LCC A 2 49.120 10.535 4.795 1.00 34.89 N HETATM 31 N3 LCC A 2 46.832 10.199 4.618 1.00 33.42 N HETATM 32 C2 LCC A 2 45.587 10.697 4.701 1.00 32.00 C HETATM 33 O2 LCC A 2 44.638 9.959 4.484 1.00 31.28 O HETATM 34 C3' LCC A 2 43.552 13.332 7.180 1.00 23.51 C HETATM 35 C2' LCC A 2 43.277 12.042 6.393 1.00 26.37 C HETATM 36 O2' LCC A 2 41.831 12.171 6.249 1.00 25.48 O HETATM 37 O3' LCC A 2 42.847 13.302 8.493 1.00 24.12 O HETATM 38 C6' LCC A 2 41.559 13.612 5.937 1.00 24.75 C HETATM 39 P LCC A 2 45.232 17.081 6.922 1.00 31.69 P HETATM 40 O1P LCC A 2 46.585 16.525 7.061 1.00 25.67 O HETATM 41 OXT LCC A 2 44.612 17.824 8.036 1.00 27.39 O HETATM 42 O5' LCC A 3 43.525 11.189 9.798 1.00 20.90 O HETATM 43 C5' LCC A 3 42.256 10.464 9.828 1.00 20.94 C HETATM 44 C4' LCC A 3 42.579 9.009 9.331 1.00 21.77 C HETATM 45 O4' LCC A 3 43.245 8.996 8.056 1.00 20.47 O HETATM 46 C1' LCC A 3 43.872 7.714 8.076 1.00 23.04 C HETATM 47 N1 LCC A 3 45.341 7.761 7.990 1.00 21.62 N HETATM 48 C6 LCC A 3 45.893 9.020 8.084 1.00 20.52 C HETATM 49 C5 LCC A 3 47.226 9.208 8.036 1.00 20.80 C HETATM 50 C5M LCC A 3 47.668 10.538 8.086 1.00 20.17 C HETATM 51 C4 LCC A 3 48.030 8.072 7.873 1.00 21.34 C HETATM 52 N4 LCC A 3 49.352 8.247 7.800 1.00 26.23 N HETATM 53 N3 LCC A 3 47.467 6.823 7.819 1.00 20.86 N HETATM 54 C2 LCC A 3 46.117 6.662 7.875 1.00 20.89 C HETATM 55 O2 LCC A 3 45.628 5.513 7.838 1.00 23.07 O HETATM 56 C3' LCC A 3 43.447 8.225 10.222 1.00 20.62 C HETATM 57 C2' LCC A 3 43.403 7.073 9.360 1.00 20.90 C HETATM 58 O2' LCC A 3 42.113 6.789 9.143 1.00 21.62 O HETATM 59 O3' LCC A 3 42.837 7.947 11.457 1.00 23.65 O HETATM 60 C6' LCC A 3 41.427 8.075 9.269 1.00 20.57 C HETATM 61 P LCC A 3 43.696 12.827 9.784 1.00 20.98 P HETATM 62 O1P LCC A 3 45.096 13.211 9.459 1.00 20.33 O HETATM 63 OXT LCC A 3 43.019 13.453 10.936 1.00 23.22 O HETATM 64 P LCG A 4 43.716 7.729 12.815 1.00 26.21 P HETATM 65 OP1 LCG A 4 42.727 7.666 13.942 1.00 25.41 O HETATM 66 O5' LCG A 4 44.264 6.371 12.630 1.00 23.85 O HETATM 67 C5' LCG A 4 43.426 5.196 12.718 1.00 24.01 C HETATM 68 C3' LCG A 4 45.458 3.893 13.360 1.00 23.40 C HETATM 69 C6' LCG A 4 43.680 2.698 12.381 1.00 23.83 C HETATM 70 N9 LCG A 4 47.271 4.225 11.053 1.00 24.98 N HETATM 71 C8 LCG A 4 47.276 5.569 11.141 1.00 26.04 C HETATM 72 C4 LCG A 4 48.480 3.832 10.628 1.00 25.41 C HETATM 73 N7 LCG A 4 48.480 6.008 10.770 1.00 25.16 N HETATM 74 C5 LCG A 4 49.214 4.937 10.476 1.00 24.91 C HETATM 75 C6 LCG A 4 50.486 4.842 10.065 1.00 26.68 C HETATM 76 C2' LCG A 4 46.002 2.688 12.615 1.00 25.32 C HETATM 77 O6 LCG A 4 51.202 5.837 9.932 1.00 28.85 O HETATM 78 C4' LCG A 4 44.331 4.039 12.404 1.00 24.02 C HETATM 79 C1' LCG A 4 46.145 3.314 11.261 1.00 26.45 C HETATM 80 C2 LCG A 4 50.245 2.489 9.960 1.00 27.94 C HETATM 81 N1 LCG A 4 51.019 3.606 9.793 1.00 27.32 N HETATM 82 O4' LCG A 4 45.005 4.224 11.163 1.00 24.15 O HETATM 83 OP2 LCG A 4 44.703 8.821 12.883 1.00 30.56 O HETATM 84 N2 LCG A 4 50.789 1.312 9.691 1.00 28.95 N HETATM 85 N3 LCG A 4 48.975 2.609 10.357 1.00 25.83 N HETATM 86 O2' LCG A 4 44.943 1.803 12.557 1.00 25.78 O HETATM 87 O3' LCG A 4 45.018 3.617 14.659 1.00 24.58 O