HEADER OXIDOREDUCTASE 24-MAY-23 8SY3 TITLE COPPER COMPLEX OF PEANUT USP-TYPE BURP DOMAIN PEPTIDE CYCLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BURP DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARACHIS HYPOGAEA; SOURCE 3 ORGANISM_COMMON: PEANUT; SOURCE 4 ORGANISM_TAXID: 3818; SOURCE 5 GENE: AHY_A03G014892, AHY_A03G014900; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS COPPER COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.S.MYDY,R.D.KERSTEN,J.L.SMITH REVDAT 3 10-APR-24 8SY3 1 JRNL REVDAT 2 28-FEB-24 8SY3 1 JRNL REVDAT 1 14-FEB-24 8SY3 0 JRNL AUTH L.S.MYDY,J.HUNGERFORD,D.N.CHIGUMBA,J.R.KONWERSKI,S.C.JANTZI, JRNL AUTH 2 D.WANG,J.L.SMITH,R.D.KERSTEN JRNL TITL AN INTRAMOLECULAR MACROCYCLASE IN PLANT RIBOSOMAL PEPTIDE JRNL TITL 2 BIOSYNTHESIS. JRNL REF NAT.CHEM.BIOL. V. 20 530 2024 JRNL REFN ESSN 1552-4469 JRNL PMID 38355722 JRNL DOI 10.1038/S41589-024-01552-1 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0415 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 12133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 613 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 872 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3237 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 135.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : -0.62000 REMARK 3 B12 (A**2) : 0.09000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.453 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.358 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 48.875 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3335 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3085 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4508 ; 1.661 ; 1.669 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7145 ; 0.589 ; 1.586 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 403 ; 8.023 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 8 ; 8.868 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 561 ;15.703 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 483 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3801 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 747 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1630 ;11.799 ; 9.651 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1630 ;11.798 ; 9.653 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2027 ;17.757 ;17.289 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2028 ;17.761 ;17.293 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1705 ;12.074 ;10.082 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1705 ;12.056 ;10.087 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2482 ;17.721 ;18.274 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 13571 ;25.511 ;19.380 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 13572 ;25.512 ;19.390 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 251 REMARK 3 ORIGIN FOR THE GROUP (A): -9.6582 30.8330 -11.4179 REMARK 3 T TENSOR REMARK 3 T11: 0.2658 T22: 0.1541 REMARK 3 T33: 0.1961 T12: 0.0548 REMARK 3 T13: 0.0540 T23: 0.0469 REMARK 3 L TENSOR REMARK 3 L11: 4.3918 L22: 3.6921 REMARK 3 L33: 5.4342 L12: 2.3836 REMARK 3 L13: 1.6418 L23: 1.6140 REMARK 3 S TENSOR REMARK 3 S11: -0.0620 S12: 0.1488 S13: 0.5656 REMARK 3 S21: -0.1839 S22: -0.0066 S23: 0.7552 REMARK 3 S31: -0.4186 S32: -0.7836 S33: 0.0686 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 250 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0770 22.1693 -5.9402 REMARK 3 T TENSOR REMARK 3 T11: 0.2248 T22: 0.3040 REMARK 3 T33: 0.1385 T12: -0.0807 REMARK 3 T13: 0.0407 T23: -0.0990 REMARK 3 L TENSOR REMARK 3 L11: 3.0512 L22: 6.2939 REMARK 3 L33: 4.5668 L12: -0.6929 REMARK 3 L13: 0.5634 L23: -2.8575 REMARK 3 S TENSOR REMARK 3 S11: -0.0613 S12: -0.2553 S13: 0.0870 REMARK 3 S21: 0.2735 S22: -0.0530 S23: -0.7503 REMARK 3 S31: 0.0075 S32: 0.8401 S33: 0.1143 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8SY3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000274768. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.3777 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12803 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 70.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 1.31400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: HEXAGONAL ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.7 M SODIUM FORMATE, 0.1 M TRIS PH REMARK 280 8.0, PH 8.4, VAPOR DIFFUSION, TEMPERATURE 295.2K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.61267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 149.22533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.91900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 186.53167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.30633 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.61267 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 149.22533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 186.53167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 111.91900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 37.30633 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 HIS A 2 REMARK 465 GLY A 3 REMARK 465 GLY A 4 REMARK 465 ARG A 5 REMARK 465 GLU A 6 REMARK 465 LEU A 7 REMARK 465 ILE A 8 REMARK 465 GLY A 34 REMARK 465 ALA A 35 REMARK 465 GLN A 36 REMARK 465 ASP A 37 REMARK 465 SER A 38 REMARK 465 GLU A 39 REMARK 465 ILE A 40 REMARK 465 ASN A 41 REMARK 465 ASP A 42 REMARK 465 VAL A 43 REMARK 465 PRO A 44 REMARK 465 MET A 45 REMARK 465 LYS A 46 REMARK 465 VAL A 47 REMARK 465 TYR A 84 REMARK 465 THR A 85 REMARK 465 TRP A 86 REMARK 465 GLY A 87 REMARK 465 LYS A 88 REMARK 465 VAL A 89 REMARK 465 ILE A 90 REMARK 465 LYS A 91 REMARK 465 ASP A 92 REMARK 465 LEU A 93 REMARK 465 GLU A 94 REMARK 465 LYS A 95 REMARK 465 GLU A 96 REMARK 465 SER A 97 REMARK 465 PHE A 98 REMARK 465 THR A 99 REMARK 465 PHE A 100 REMARK 465 GLU A 101 REMARK 465 ASP A 102 REMARK 465 ALA A 103 REMARK 465 ALA A 252 REMARK 465 ASN A 253 REMARK 465 MET A 254 REMARK 465 ALA A 255 REMARK 465 SER A 256 REMARK 465 ALA B 1 REMARK 465 HIS B 2 REMARK 465 GLY B 3 REMARK 465 GLY B 4 REMARK 465 ARG B 5 REMARK 465 GLU B 6 REMARK 465 LEU B 7 REMARK 465 ILE B 8 REMARK 465 GLY B 34 REMARK 465 ALA B 35 REMARK 465 GLN B 36 REMARK 465 ASP B 37 REMARK 465 SER B 38 REMARK 465 GLU B 39 REMARK 465 ILE B 40 REMARK 465 ASN B 41 REMARK 465 ASP B 42 REMARK 465 VAL B 43 REMARK 465 PRO B 44 REMARK 465 MET B 45 REMARK 465 LYS B 46 REMARK 465 VAL B 47 REMARK 465 ASP B 48 REMARK 465 PHE B 77 REMARK 465 ALA B 78 REMARK 465 GLN B 79 REMARK 465 PRO B 80 REMARK 465 TYR B 81 REMARK 465 GLY B 82 REMARK 465 VAL B 83 REMARK 465 TYR B 84 REMARK 465 THR B 85 REMARK 465 TRP B 86 REMARK 465 GLY B 87 REMARK 465 LYS B 88 REMARK 465 VAL B 89 REMARK 465 ILE B 90 REMARK 465 LYS B 91 REMARK 465 ASP B 92 REMARK 465 LEU B 93 REMARK 465 GLU B 94 REMARK 465 LYS B 95 REMARK 465 GLU B 96 REMARK 465 SER B 97 REMARK 465 PHE B 98 REMARK 465 THR B 99 REMARK 465 PHE B 100 REMARK 465 GLU B 101 REMARK 465 ASP B 102 REMARK 465 ALA B 103 REMARK 465 ASN B 251 REMARK 465 ALA B 252 REMARK 465 ASN B 253 REMARK 465 MET B 254 REMARK 465 ALA B 255 REMARK 465 SER B 256 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR B 249 CB - CA - C ANGL. DEV. = 13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 18 75.49 -118.72 REMARK 500 THR A 50 -162.55 -116.84 REMARK 500 ALA A 78 -117.55 50.45 REMARK 500 TYR A 81 -127.40 37.90 REMARK 500 ALA A 108 55.81 -68.80 REMARK 500 GLU A 112 -40.50 76.31 REMARK 500 THR A 207 33.74 -81.23 REMARK 500 ASN A 211 105.55 -57.57 REMARK 500 SER A 247 -120.11 58.51 REMARK 500 TRP B 18 75.77 -119.12 REMARK 500 VAL B 105 -39.09 -39.86 REMARK 500 ARG B 106 79.84 -107.63 REMARK 500 GLU B 107 104.22 -57.49 REMARK 500 LYS B 110 -17.05 -49.69 REMARK 500 GLU B 112 -33.44 73.25 REMARK 500 THR B 207 32.72 -83.61 REMARK 500 SER B 247 -120.78 57.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 211 10.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 302 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 204 NE2 REMARK 620 2 HIS A 230 NE2 98.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 302 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 204 NE2 REMARK 620 2 HIS B 230 NE2 102.2 REMARK 620 3 HOH B 401 O 105.8 130.9 REMARK 620 N 1 2 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8SY2 RELATED DB: PDB DBREF1 8SY3 A 4 256 UNP A0A445DYW3_ARAHY DBREF2 8SY3 A A0A445DYW3 21 273 DBREF1 8SY3 B 4 256 UNP A0A445DYW3_ARAHY DBREF2 8SY3 B A0A445DYW3 21 273 SEQADV 8SY3 ALA A 1 UNP A0A445DYW CLONING ARTIFACT SEQADV 8SY3 HIS A 2 UNP A0A445DYW CLONING ARTIFACT SEQADV 8SY3 GLY A 3 UNP A0A445DYW CLONING ARTIFACT SEQADV 8SY3 ALA B 1 UNP A0A445DYW CLONING ARTIFACT SEQADV 8SY3 HIS B 2 UNP A0A445DYW CLONING ARTIFACT SEQADV 8SY3 GLY B 3 UNP A0A445DYW CLONING ARTIFACT SEQRES 1 A 256 ALA HIS GLY GLY ARG GLU LEU ILE PRO ASP GLU ASP TYR SEQRES 2 A 256 TRP GLN ALA VAL TRP PRO ASN THR PRO ILE PRO ASN THR SEQRES 3 A 256 LEU LYS GLU LEU LEU LYS PRO GLY ALA GLN ASP SER GLU SEQRES 4 A 256 ILE ASN ASP VAL PRO MET LYS VAL ASP ASP THR GLN TYR SEQRES 5 A 256 PRO LYS THR PHE PHE PHE GLU HIS GLU LEU PHE PRO GLY SEQRES 6 A 256 LYS LYS MET ASN MET LYS PHE SER LYS ILE PRO PHE ALA SEQRES 7 A 256 GLN PRO TYR GLY VAL TYR THR TRP GLY LYS VAL ILE LYS SEQRES 8 A 256 ASP LEU GLU LYS GLU SER PHE THR PHE GLU ASP ALA CYS SEQRES 9 A 256 VAL ARG GLU ALA GLY LYS GLY GLU ASP LYS TYR CYS ALA SEQRES 10 A 256 LYS SER LEU SER THR LEU ILE GLY PHE ALA VAL SER LYS SEQRES 11 A 256 LEU GLY LYS ASN ILE GLN PRO PHE SER SER SER PHE LEU SEQRES 12 A 256 ASP LYS GLN THR ASP TYR THR ILE GLU GLY VAL HIS ASN SEQRES 13 A 256 LEU GLY ASP LYS ALA VAL MET CYS HIS ARG LEU ASN PHE SEQRES 14 A 256 GLN SER THR VAL PHE TYR CYS HIS GLU ILE HIS GLY THR SEQRES 15 A 256 THR ALA TYR MET VAL PRO MET VAL ALA ALA ASP GLY ARG SEQRES 16 A 256 ARG THR GLN ALA LEU ALA VAL CYS HIS HIS ASP THR SER SEQRES 17 A 256 GLY MET ASN ALA GLU VAL LEU TYR GLU MET LEU LYS ILE SEQRES 18 A 256 LYS PRO GLY THR GLU THR ALA CYS HIS PHE LEU GLY ASN SEQRES 19 A 256 LYS ALA VAL MET TRP VAL PRO ASN MET ALA VAL ASN SER SEQRES 20 A 256 VAL TYR ASN ASN ALA ASN MET ALA SER SEQRES 1 B 256 ALA HIS GLY GLY ARG GLU LEU ILE PRO ASP GLU ASP TYR SEQRES 2 B 256 TRP GLN ALA VAL TRP PRO ASN THR PRO ILE PRO ASN THR SEQRES 3 B 256 LEU LYS GLU LEU LEU LYS PRO GLY ALA GLN ASP SER GLU SEQRES 4 B 256 ILE ASN ASP VAL PRO MET LYS VAL ASP ASP THR GLN TYR SEQRES 5 B 256 PRO LYS THR PHE PHE PHE GLU HIS GLU LEU PHE PRO GLY SEQRES 6 B 256 LYS LYS MET ASN MET LYS PHE SER LYS ILE PRO PHE ALA SEQRES 7 B 256 GLN PRO TYR GLY VAL TYR THR TRP GLY LYS VAL ILE LYS SEQRES 8 B 256 ASP LEU GLU LYS GLU SER PHE THR PHE GLU ASP ALA CYS SEQRES 9 B 256 VAL ARG GLU ALA GLY LYS GLY GLU ASP LYS TYR CYS ALA SEQRES 10 B 256 LYS SER LEU SER THR LEU ILE GLY PHE ALA VAL SER LYS SEQRES 11 B 256 LEU GLY LYS ASN ILE GLN PRO PHE SER SER SER PHE LEU SEQRES 12 B 256 ASP LYS GLN THR ASP TYR THR ILE GLU GLY VAL HIS ASN SEQRES 13 B 256 LEU GLY ASP LYS ALA VAL MET CYS HIS ARG LEU ASN PHE SEQRES 14 B 256 GLN SER THR VAL PHE TYR CYS HIS GLU ILE HIS GLY THR SEQRES 15 B 256 THR ALA TYR MET VAL PRO MET VAL ALA ALA ASP GLY ARG SEQRES 16 B 256 ARG THR GLN ALA LEU ALA VAL CYS HIS HIS ASP THR SER SEQRES 17 B 256 GLY MET ASN ALA GLU VAL LEU TYR GLU MET LEU LYS ILE SEQRES 18 B 256 LYS PRO GLY THR GLU THR ALA CYS HIS PHE LEU GLY ASN SEQRES 19 B 256 LYS ALA VAL MET TRP VAL PRO ASN MET ALA VAL ASN SER SEQRES 20 B 256 VAL TYR ASN ASN ALA ASN MET ALA SER HET CU A 302 1 HET CU B 302 1 HETNAM CU COPPER (II) ION FORMUL 3 CU 2(CU 2+) FORMUL 5 HOH *(H2 O) HELIX 1 AA1 PRO A 9 TRP A 18 1 10 HELIX 2 AA2 PRO A 24 LYS A 32 1 9 HELIX 3 AA3 PHE A 58 LEU A 62 5 5 HELIX 4 AA4 SER A 119 GLY A 132 1 14 HELIX 5 AA5 ASN A 211 LYS A 220 1 10 HELIX 6 AA6 PRO A 241 SER A 247 1 7 HELIX 7 AA7 PRO B 9 TRP B 18 1 10 HELIX 8 AA8 PRO B 24 LYS B 32 1 9 HELIX 9 AA9 PHE B 58 LEU B 62 5 5 HELIX 10 AB1 SER B 119 GLY B 132 1 14 HELIX 11 AB2 ASN B 211 LYS B 220 1 10 HELIX 12 AB3 PRO B 241 SER B 247 1 7 SHEET 1 AA1 7 TYR A 52 PHE A 57 0 SHEET 2 AA1 7 GLY A 65 SER A 73 -1 O SER A 73 N TYR A 52 SHEET 3 AA1 7 THR A 147 GLY A 158 -1 O TYR A 149 N MET A 68 SHEET 4 AA1 7 GLY A 181 ALA A 192 -1 O MET A 186 N HIS A 155 SHEET 5 AA1 7 GLY A 194 HIS A 205 -1 O CYS A 203 N THR A 183 SHEET 6 AA1 7 THR A 227 LEU A 232 -1 O HIS A 230 N VAL A 202 SHEET 7 AA1 7 TYR A 52 PHE A 57 -1 N PHE A 57 O CYS A 229 SHEET 1 AA2 5 ASP A 113 LYS A 118 0 SHEET 2 AA2 5 VAL A 173 ILE A 179 -1 O CYS A 176 N TYR A 115 SHEET 3 AA2 5 ALA A 161 LEU A 167 -1 N HIS A 165 O TYR A 175 SHEET 4 AA2 5 LYS A 235 VAL A 240 -1 O VAL A 237 N CYS A 164 SHEET 5 AA2 5 GLN A 136 PHE A 138 -1 N PHE A 138 O MET A 238 SHEET 1 AA3 7 TYR B 52 PHE B 57 0 SHEET 2 AA3 7 GLY B 65 SER B 73 -1 O SER B 73 N TYR B 52 SHEET 3 AA3 7 THR B 147 GLY B 158 -1 O TYR B 149 N MET B 68 SHEET 4 AA3 7 GLY B 181 ALA B 192 -1 O MET B 186 N HIS B 155 SHEET 5 AA3 7 GLY B 194 HIS B 205 -1 O CYS B 203 N THR B 183 SHEET 6 AA3 7 THR B 227 LEU B 232 -1 O HIS B 230 N VAL B 202 SHEET 7 AA3 7 TYR B 52 PHE B 57 -1 N PHE B 57 O CYS B 229 SHEET 1 AA4 5 ASP B 113 LYS B 118 0 SHEET 2 AA4 5 VAL B 173 ILE B 179 -1 O CYS B 176 N TYR B 115 SHEET 3 AA4 5 ALA B 161 LEU B 167 -1 N HIS B 165 O TYR B 175 SHEET 4 AA4 5 LYS B 235 VAL B 240 -1 O VAL B 237 N CYS B 164 SHEET 5 AA4 5 GLN B 136 PHE B 138 -1 N PHE B 138 O MET B 238 SSBOND 1 CYS A 104 CYS A 116 1555 1555 2.08 SSBOND 2 CYS A 164 CYS A 176 1555 1555 2.17 SSBOND 3 CYS A 203 CYS A 229 1555 1555 2.06 SSBOND 4 CYS B 104 CYS B 116 1555 1555 2.05 SSBOND 5 CYS B 164 CYS B 176 1555 1555 2.15 SSBOND 6 CYS B 203 CYS B 229 1555 1555 2.06 LINK NE2 HIS A 204 CU CU A 302 1555 1555 2.03 LINK NE2 HIS A 230 CU CU A 302 1555 1555 2.08 LINK NE2 HIS B 204 CU CU B 302 1555 1555 2.09 LINK NE2 HIS B 230 CU CU B 302 1555 1555 2.11 LINK CU CU B 302 O HOH B 401 1555 1555 2.03 CRYST1 105.407 105.407 223.838 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009487 0.005477 0.000000 0.00000 SCALE2 0.000000 0.010955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004468 0.00000