HEADER PROTEIN TRANSPORT 25-MAY-23 8SYM TITLE HUMAN VPS29/VPS35L COMPLEX (LOCALLY REFINED MAP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: VPS35 ENDOSOMAL PROTEIN-SORTING FACTOR-LIKE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ESOPHAGEAL CANCER-ASSOCIATED PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 29; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: HVPS29,PEP11 HOMOLOG,VESICLE PROTEIN SORTING 29; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VPS35L, C16ORF62, 101F10.2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: VPS29, DC15, DC7, MDS007; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS COMMD, RETRIEVER, COMMANDER, CCC, PROTEIN TRANSPORT EXPDTA ELECTRON MICROSCOPY AUTHOR Z.CHEN,B.CHEN,E.BURSTEIN,Y.HAN REVDAT 3 20-DEC-23 8SYM 1 JRNL REVDAT 2 13-DEC-23 8SYM 1 JRNL REVDAT 1 01-NOV-23 8SYM 0 JRNL AUTH D.J.BOESCH,A.SINGLA,Y.HAN,D.A.KRAMER,Q.LIU,K.SUZUKI, JRNL AUTH 2 P.JUNEJA,X.ZHAO,X.LONG,M.J.MEDLYN,D.D.BILLADEAU,Z.CHEN, JRNL AUTH 3 B.CHEN,E.BURSTEIN JRNL TITL STRUCTURAL ORGANIZATION OF THE RETRIEVER-CCC ENDOSOMAL JRNL TITL 2 RECYCLING COMPLEX. JRNL REF NAT.STRUCT.MOL.BIOL. 2023 JRNL REFN ESSN 1545-9985 JRNL PMID 38062209 JRNL DOI 10.1038/S41594-023-01184-4 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : TOPAZ, SERIALEM, CRYOSPARC, COOT, UCSF REMARK 3 CHIMERA, PHENIX, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : 107.900 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.200 REMARK 3 NUMBER OF PARTICLES : 83654 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8SYM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000274707. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COMPLEX OF FULL-LENGTH VPS29 REMARK 245 WITH VPS35L REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.25 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 3594 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2400.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ILE A 38 REMARK 465 THR A 39 REMARK 465 VAL A 40 REMARK 465 THR A 41 REMARK 465 GLU A 42 REMARK 465 SER A 43 REMARK 465 LYS A 44 REMARK 465 THR A 45 REMARK 465 LYS A 46 REMARK 465 LYS A 47 REMARK 465 VAL A 48 REMARK 465 ASN A 49 REMARK 465 ARG A 50 REMARK 465 LYS A 51 REMARK 465 GLY A 52 REMARK 465 SER A 53 REMARK 465 THR A 54 REMARK 465 SER A 55 REMARK 465 SER A 56 REMARK 465 THR A 57 REMARK 465 SER A 58 REMARK 465 SER A 59 REMARK 465 SER A 60 REMARK 465 SER A 61 REMARK 465 SER A 62 REMARK 465 SER A 63 REMARK 465 SER A 64 REMARK 465 VAL A 65 REMARK 465 VAL A 66 REMARK 465 ASP A 67 REMARK 465 PRO A 68 REMARK 465 LEU A 69 REMARK 465 SER A 70 REMARK 465 SER A 71 REMARK 465 VAL A 72 REMARK 465 LEU A 73 REMARK 465 ASP A 74 REMARK 465 GLY A 75 REMARK 465 THR A 76 REMARK 465 ASP A 77 REMARK 465 PRO A 78 REMARK 465 LEU A 79 REMARK 465 SER A 80 REMARK 465 MET A 81 REMARK 465 PHE A 82 REMARK 465 ALA A 83 REMARK 465 ALA A 84 REMARK 465 THR A 85 REMARK 465 ALA A 86 REMARK 465 ASP A 87 REMARK 465 PRO A 88 REMARK 465 ALA A 89 REMARK 465 ALA A 90 REMARK 465 LEU A 91 REMARK 465 ALA A 92 REMARK 465 ALA A 93 REMARK 465 ALA A 94 REMARK 465 MET A 95 REMARK 465 ASP A 96 REMARK 465 SER A 97 REMARK 465 SER A 98 REMARK 465 ARG A 99 REMARK 465 ARG A 100 REMARK 465 LYS A 101 REMARK 465 ARG A 102 REMARK 465 ASP A 103 REMARK 465 ARG A 104 REMARK 465 ASP A 105 REMARK 465 ASP A 106 REMARK 465 ASN A 107 REMARK 465 SER A 108 REMARK 465 VAL A 109 REMARK 465 VAL A 110 REMARK 465 GLY A 111 REMARK 465 SER A 112 REMARK 465 ASP A 113 REMARK 465 PHE A 114 REMARK 465 GLU A 115 REMARK 465 PRO A 116 REMARK 465 TRP A 117 REMARK 465 THR A 118 REMARK 465 ASN A 119 REMARK 465 LYS A 120 REMARK 465 ARG A 121 REMARK 465 GLY A 122 REMARK 465 GLU A 123 REMARK 465 ILE A 124 REMARK 465 LEU A 125 REMARK 465 ALA A 126 REMARK 465 ARG A 127 REMARK 465 TYR A 128 REMARK 465 THR A 129 REMARK 465 THR A 130 REMARK 465 THR A 131 REMARK 465 GLU A 132 REMARK 465 LYS A 133 REMARK 465 LEU A 134 REMARK 465 SER A 135 REMARK 465 ILE A 136 REMARK 465 ASN A 137 REMARK 465 LEU A 138 REMARK 465 PHE A 139 REMARK 465 MET A 140 REMARK 465 GLY A 141 REMARK 465 SER A 142 REMARK 465 GLU A 143 REMARK 465 LYS A 144 REMARK 465 GLY A 145 REMARK 465 LYS A 146 REMARK 465 ALA A 147 REMARK 465 GLY A 148 REMARK 465 THR A 149 REMARK 465 ALA A 150 REMARK 465 THR A 151 REMARK 465 LEU A 152 REMARK 465 ALA A 153 REMARK 465 MET A 154 REMARK 465 SER A 155 REMARK 465 GLU A 156 REMARK 465 LYS A 157 REMARK 465 VAL A 158 REMARK 465 ARG A 159 REMARK 465 THR A 160 REMARK 465 ARG A 161 REMARK 465 LEU A 162 REMARK 465 GLU A 163 REMARK 465 GLU A 164 REMARK 465 LEU A 165 REMARK 465 ASP A 166 REMARK 465 ASP A 167 REMARK 465 PHE A 168 REMARK 465 GLU A 169 REMARK 465 GLU A 170 REMARK 465 GLY A 171 REMARK 465 SER A 172 REMARK 465 GLN A 173 REMARK 465 LYS A 174 REMARK 465 GLU A 175 REMARK 465 LEU A 176 REMARK 465 LEU A 177 REMARK 465 ASN A 178 REMARK 465 LEU A 179 REMARK 465 THR A 180 REMARK 465 GLN A 181 REMARK 465 GLN A 182 REMARK 465 ASP A 183 REMARK 465 TYR A 184 REMARK 465 VAL A 185 REMARK 465 ASN A 186 REMARK 465 ARG A 187 REMARK 465 ILE A 188 REMARK 465 GLU A 189 REMARK 465 GLU A 190 REMARK 465 LEU A 191 REMARK 465 ASN A 192 REMARK 465 GLN A 193 REMARK 465 SER A 194 REMARK 465 LEU A 195 REMARK 465 LYS A 196 REMARK 465 ASP A 197 REMARK 465 ALA A 198 REMARK 465 TRP A 199 REMARK 465 ALA A 200 REMARK 465 SER A 201 REMARK 465 ASP A 202 REMARK 465 GLN A 203 REMARK 465 LYS A 204 REMARK 465 VAL A 205 REMARK 465 LYS A 206 REMARK 465 ALA A 207 REMARK 465 LEU A 208 REMARK 465 LYS A 209 REMARK 465 ILE A 210 REMARK 465 VAL A 211 REMARK 465 ILE A 212 REMARK 465 GLN A 213 REMARK 465 CYS A 214 REMARK 465 SER A 215 REMARK 465 LYS A 216 REMARK 465 LEU A 217 REMARK 465 LEU A 218 REMARK 465 SER A 219 REMARK 465 ASP A 220 REMARK 465 THR A 221 REMARK 465 SER A 222 REMARK 465 VAL A 223 REMARK 465 ILE A 224 REMARK 465 GLN A 225 REMARK 465 PHE A 226 REMARK 465 TYR A 227 REMARK 465 PRO A 228 REMARK 465 SER A 229 REMARK 465 LYS A 230 REMARK 465 PHE A 231 REMARK 465 VAL A 232 REMARK 465 LEU A 233 REMARK 465 ILE A 234 REMARK 465 THR A 235 REMARK 465 ASP A 236 REMARK 465 ILE A 237 REMARK 465 LEU A 238 REMARK 465 ASP A 239 REMARK 465 THR A 240 REMARK 465 PHE A 241 REMARK 465 GLY A 242 REMARK 465 LYS A 243 REMARK 465 LEU A 244 REMARK 465 VAL A 245 REMARK 465 TYR A 246 REMARK 465 GLU A 247 REMARK 465 ARG A 248 REMARK 465 ILE A 249 REMARK 465 PHE A 250 REMARK 465 SER A 251 REMARK 465 MET A 252 REMARK 465 CYS A 253 REMARK 465 VAL A 254 REMARK 465 ASP A 255 REMARK 465 SER A 256 REMARK 465 ARG A 257 REMARK 465 SER A 258 REMARK 465 VAL A 259 REMARK 465 LEU A 260 REMARK 465 PRO A 261 REMARK 465 ASP A 262 REMARK 465 HIS A 263 REMARK 465 PHE A 264 REMARK 465 SER A 265 REMARK 465 PRO A 266 REMARK 465 GLU A 267 REMARK 465 ASN A 268 REMARK 465 ALA A 269 REMARK 465 ASN A 270 REMARK 465 ASP A 271 REMARK 465 THR A 272 REMARK 465 ALA A 273 REMARK 465 LYS A 274 REMARK 465 GLU A 275 REMARK 465 THR A 276 REMARK 465 CYS A 277 REMARK 465 LEU A 278 REMARK 465 ASN A 279 REMARK 465 TRP A 280 REMARK 465 PHE A 281 REMARK 465 PHE A 282 REMARK 465 LYS A 283 REMARK 465 ILE A 284 REMARK 465 ALA A 285 REMARK 465 SER A 286 REMARK 465 ILE A 287 REMARK 465 ARG A 288 REMARK 465 GLU A 289 REMARK 465 LEU A 290 REMARK 465 ILE A 291 REMARK 465 PRO A 292 REMARK 465 ARG A 293 REMARK 465 PHE A 294 REMARK 465 TYR A 295 REMARK 465 VAL A 296 REMARK 465 GLU A 297 REMARK 465 ALA A 298 REMARK 465 SER A 299 REMARK 465 ILE A 300 REMARK 465 LEU A 301 REMARK 465 LYS A 302 REMARK 465 CYS A 303 REMARK 465 ASN A 304 REMARK 465 LYS A 305 REMARK 465 PHE A 306 REMARK 465 LEU A 307 REMARK 465 SER A 308 REMARK 465 LYS A 309 REMARK 465 THR A 310 REMARK 465 GLY A 311 REMARK 465 ILE A 312 REMARK 465 SER A 313 REMARK 465 GLU A 314 REMARK 465 CYS A 315 REMARK 465 LEU A 316 REMARK 465 PRO A 317 REMARK 465 ARG A 318 REMARK 465 LEU A 319 REMARK 465 THR A 320 REMARK 465 CYS A 321 REMARK 465 MET A 322 REMARK 465 ILE A 323 REMARK 465 ARG A 324 REMARK 465 GLY A 325 REMARK 465 ILE A 326 REMARK 465 GLY A 327 REMARK 465 ASP A 328 REMARK 465 PRO A 329 REMARK 465 LEU A 330 REMARK 465 VAL A 331 REMARK 465 SER A 332 REMARK 465 VAL A 333 REMARK 465 TYR A 334 REMARK 465 ALA A 335 REMARK 465 ARG A 336 REMARK 465 ALA A 337 REMARK 465 TYR A 338 REMARK 465 LEU A 339 REMARK 465 CYS A 340 REMARK 465 ARG A 341 REMARK 465 VAL A 342 REMARK 465 GLY A 343 REMARK 465 MET A 344 REMARK 465 GLU A 345 REMARK 465 VAL A 346 REMARK 465 ALA A 347 REMARK 465 PRO A 348 REMARK 465 HIS A 349 REMARK 465 LEU A 350 REMARK 465 LYS A 351 REMARK 465 GLU A 352 REMARK 465 THR A 353 REMARK 465 LEU A 354 REMARK 465 ASN A 355 REMARK 465 LYS A 356 REMARK 465 ASN A 357 REMARK 465 PHE A 358 REMARK 465 PHE A 359 REMARK 465 ASP A 360 REMARK 465 PHE A 361 REMARK 465 LEU A 362 REMARK 465 LEU A 363 REMARK 465 THR A 364 REMARK 465 PHE A 365 REMARK 465 LYS A 366 REMARK 465 GLN A 367 REMARK 465 ILE A 368 REMARK 465 HIS A 369 REMARK 465 GLY A 370 REMARK 465 ASP A 371 REMARK 465 THR A 372 REMARK 465 VAL A 373 REMARK 465 GLN A 374 REMARK 465 ASN A 375 REMARK 465 GLN A 376 REMARK 465 LEU A 377 REMARK 465 VAL A 378 REMARK 465 VAL A 379 REMARK 465 GLN A 380 REMARK 465 GLY A 381 REMARK 465 VAL A 382 REMARK 465 GLU A 383 REMARK 465 LEU A 384 REMARK 465 PRO A 385 REMARK 465 SER A 386 REMARK 465 TYR A 387 REMARK 465 LEU A 388 REMARK 465 PRO A 389 REMARK 465 LEU A 390 REMARK 465 TYR A 391 REMARK 465 PRO A 392 REMARK 465 PRO A 393 REMARK 465 ALA A 394 REMARK 465 MET A 395 REMARK 465 ASP A 396 REMARK 465 TRP A 397 REMARK 465 ILE A 398 REMARK 465 PHE A 399 REMARK 465 GLN A 400 REMARK 465 CYS A 401 REMARK 465 ILE A 402 REMARK 465 SER A 403 REMARK 465 TYR A 404 REMARK 465 HIS A 405 REMARK 465 ALA A 406 REMARK 465 PRO A 407 REMARK 465 GLU A 408 REMARK 465 ALA A 409 REMARK 465 LEU A 410 REMARK 465 LEU A 411 REMARK 465 THR A 412 REMARK 465 GLU A 413 REMARK 465 MET A 414 REMARK 465 MET A 415 REMARK 465 GLU A 416 REMARK 465 ARG A 417 REMARK 465 CYS A 418 REMARK 465 LYS A 419 REMARK 465 LYS A 420 REMARK 465 LEU A 421 REMARK 465 GLY A 422 REMARK 465 ASN A 423 REMARK 465 ASN A 424 REMARK 465 ALA A 425 REMARK 465 LEU A 426 REMARK 465 LEU A 427 REMARK 465 LEU A 428 REMARK 465 ASN A 429 REMARK 465 SER A 430 REMARK 465 VAL A 431 REMARK 465 MET A 432 REMARK 465 SER A 433 REMARK 465 ALA A 434 REMARK 465 PHE A 435 REMARK 465 ARG A 436 REMARK 465 ALA A 437 REMARK 465 GLU A 438 REMARK 465 PHE A 439 REMARK 465 ILE A 440 REMARK 465 ALA A 441 REMARK 465 THR A 442 REMARK 465 ARG A 443 REMARK 465 SER A 444 REMARK 465 MET A 445 REMARK 465 ASP A 446 REMARK 465 PHE A 447 REMARK 465 ILE A 448 REMARK 465 GLY A 449 REMARK 465 MET A 450 REMARK 465 ILE A 451 REMARK 465 LYS A 452 REMARK 465 GLU A 453 REMARK 465 CYS A 454 REMARK 465 ASP A 455 REMARK 465 GLU A 456 REMARK 465 SER A 457 REMARK 465 GLY A 458 REMARK 465 PHE A 459 REMARK 465 PRO A 460 REMARK 465 LYS A 461 REMARK 465 HIS A 462 REMARK 465 LEU A 463 REMARK 465 LEU A 464 REMARK 465 PHE A 465 REMARK 465 ARG A 466 REMARK 465 SER A 467 REMARK 465 LEU A 468 REMARK 465 GLY A 469 REMARK 465 LEU A 470 REMARK 465 ASN A 471 REMARK 465 LEU A 472 REMARK 465 ALA A 473 REMARK 465 LEU A 474 REMARK 465 ALA A 475 REMARK 465 ASP A 476 REMARK 465 PRO A 477 REMARK 465 PRO A 478 REMARK 465 GLU A 479 REMARK 465 SER A 480 REMARK 465 ASP A 481 REMARK 465 ARG A 482 REMARK 465 LEU A 483 REMARK 465 GLN A 484 REMARK 465 ILE A 485 REMARK 465 LEU A 486 REMARK 465 ASN A 487 REMARK 465 GLU A 488 REMARK 465 ALA A 489 REMARK 465 TRP A 490 REMARK 465 LYS A 491 REMARK 465 VAL A 492 REMARK 465 ILE A 493 REMARK 465 THR A 494 REMARK 465 LYS A 495 REMARK 465 LEU A 496 REMARK 465 LYS A 497 REMARK 465 ASN A 498 REMARK 465 PRO A 499 REMARK 465 GLN A 500 REMARK 465 ASP A 501 REMARK 465 TYR A 502 REMARK 465 ILE A 503 REMARK 465 ASN A 504 REMARK 465 CYS A 505 REMARK 465 ALA A 506 REMARK 465 GLU A 507 REMARK 465 VAL A 508 REMARK 465 TRP A 509 REMARK 465 VAL A 510 REMARK 465 GLU A 511 REMARK 465 TYR A 512 REMARK 465 THR A 513 REMARK 465 CYS A 514 REMARK 465 LYS A 515 REMARK 465 HIS A 516 REMARK 465 PHE A 517 REMARK 465 THR A 518 REMARK 465 LYS A 519 REMARK 465 ARG A 520 REMARK 465 GLU A 521 REMARK 465 VAL A 522 REMARK 465 ASN A 523 REMARK 465 THR A 524 REMARK 465 VAL A 525 REMARK 465 LEU A 526 REMARK 465 ALA A 527 REMARK 465 ASP A 528 REMARK 465 VAL A 529 REMARK 465 ILE A 530 REMARK 465 LYS A 531 REMARK 465 HIS A 532 REMARK 465 MET A 533 REMARK 465 THR A 534 REMARK 465 PRO A 535 REMARK 465 ASP A 536 REMARK 465 ARG A 537 REMARK 465 ALA A 538 REMARK 465 PHE A 539 REMARK 465 GLU A 540 REMARK 465 ASP A 541 REMARK 465 SER A 542 REMARK 465 TYR A 543 REMARK 465 PRO A 544 REMARK 465 GLN A 545 REMARK 465 LEU A 546 REMARK 465 GLN A 547 REMARK 465 LEU A 548 REMARK 465 ILE A 549 REMARK 465 ILE A 550 REMARK 465 LYS A 551 REMARK 465 LYS A 552 REMARK 465 VAL A 553 REMARK 465 ILE A 554 REMARK 465 ALA A 555 REMARK 465 HIS A 556 REMARK 465 PHE A 557 REMARK 465 HIS A 558 REMARK 465 ASP A 559 REMARK 465 PHE A 560 REMARK 465 SER A 561 REMARK 465 VAL A 562 REMARK 465 LEU A 563 REMARK 465 PHE A 564 REMARK 465 SER A 565 REMARK 465 VAL A 566 REMARK 465 GLU A 567 REMARK 465 LYS A 568 REMARK 465 PHE A 569 REMARK 465 LEU A 570 REMARK 465 PRO A 571 REMARK 465 PHE A 572 REMARK 465 LEU A 573 REMARK 465 ASP A 574 REMARK 465 MET A 575 REMARK 465 PHE A 576 REMARK 465 GLN A 577 REMARK 465 LYS A 578 REMARK 465 GLU A 579 REMARK 465 ASP A 603 REMARK 465 PRO A 604 REMARK 465 VAL A 605 REMARK 465 ILE A 606 REMARK 465 CYS A 925 REMARK 465 ALA A 926 REMARK 465 ASP A 927 REMARK 465 THR A 928 REMARK 465 ARG A 929 REMARK 465 THR A 930 REMARK 465 MET A 931 REMARK 465 VAL A 932 REMARK 465 LYS A 933 REMARK 465 THR A 934 REMARK 465 LEU A 935 REMARK 465 GLU A 936 REMARK 465 TYR A 937 REMARK 465 ILE A 938 REMARK 465 LYS A 939 REMARK 465 LYS A 940 REMARK 465 GLN A 941 REMARK 465 SER A 942 REMARK 465 LYS A 943 REMARK 465 GLN A 944 REMARK 465 PRO A 945 REMARK 465 ASP A 946 REMARK 465 MET A 947 REMARK 465 THR A 948 REMARK 465 HIS A 949 REMARK 465 LEU A 950 REMARK 465 THR A 951 REMARK 465 GLU A 952 REMARK 465 LEU A 953 REMARK 465 ALA A 954 REMARK 465 LEU A 955 REMARK 465 ARG A 956 REMARK 465 LEU A 957 REMARK 465 PRO A 958 REMARK 465 LEU A 959 REMARK 465 GLN A 960 REMARK 465 THR A 961 REMARK 465 ARG A 962 REMARK 465 THR A 963 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 187 REMARK 465 ASN B 188 REMARK 465 LEU B 189 REMARK 465 TYR B 190 REMARK 465 PHE B 191 REMARK 465 GLN B 192 REMARK 465 GLY B 193 REMARK 465 GLY B 194 REMARK 465 GLY B 195 REMARK 465 SER B 196 REMARK 465 GLY B 197 REMARK 465 GLY B 198 REMARK 465 SER B 199 REMARK 465 HIS B 200 REMARK 465 HIS B 201 REMARK 465 HIS B 202 REMARK 465 HIS B 203 REMARK 465 HIS B 204 REMARK 465 HIS B 205 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 35 31.36 -95.33 REMARK 500 PRO A 753 5.21 -64.72 REMARK 500 GLU A 882 -1.33 66.74 REMARK 500 CYS B 45 -7.65 74.71 REMARK 500 ALA B 161 -96.67 55.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-40884 RELATED DB: EMDB REMARK 900 HUMAN VPS29/VPS35L COMPLEX (LOCALLY REFINED MAP) REMARK 900 RELATED ID: EMD-40885 RELATED DB: EMDB REMARK 900 HUMAN VPS35L/VPS29/VPS26C COMPLEX REMARK 900 RELATED ID: EMD-40886 RELATED DB: EMDB REMARK 900 HUMAN RETRIEVER VPS35L/VPS29/VPS26C COMPLEX (COMPOSITE MAP) DBREF 8SYM A 1 963 UNP Q7Z3J2 VP35L_HUMAN 1 963 DBREF 8SYM B 1 186 UNP Q9UBQ0 VPS29_HUMAN 1 186 SEQADV 8SYM GLU B 187 UNP Q9UBQ0 EXPRESSION TAG SEQADV 8SYM ASN B 188 UNP Q9UBQ0 EXPRESSION TAG SEQADV 8SYM LEU B 189 UNP Q9UBQ0 EXPRESSION TAG SEQADV 8SYM TYR B 190 UNP Q9UBQ0 EXPRESSION TAG SEQADV 8SYM PHE B 191 UNP Q9UBQ0 EXPRESSION TAG SEQADV 8SYM GLN B 192 UNP Q9UBQ0 EXPRESSION TAG SEQADV 8SYM GLY B 193 UNP Q9UBQ0 EXPRESSION TAG SEQADV 8SYM GLY B 194 UNP Q9UBQ0 EXPRESSION TAG SEQADV 8SYM GLY B 195 UNP Q9UBQ0 EXPRESSION TAG SEQADV 8SYM SER B 196 UNP Q9UBQ0 EXPRESSION TAG SEQADV 8SYM GLY B 197 UNP Q9UBQ0 EXPRESSION TAG SEQADV 8SYM GLY B 198 UNP Q9UBQ0 EXPRESSION TAG SEQADV 8SYM SER B 199 UNP Q9UBQ0 EXPRESSION TAG SEQADV 8SYM HIS B 200 UNP Q9UBQ0 EXPRESSION TAG SEQADV 8SYM HIS B 201 UNP Q9UBQ0 EXPRESSION TAG SEQADV 8SYM HIS B 202 UNP Q9UBQ0 EXPRESSION TAG SEQADV 8SYM HIS B 203 UNP Q9UBQ0 EXPRESSION TAG SEQADV 8SYM HIS B 204 UNP Q9UBQ0 EXPRESSION TAG SEQADV 8SYM HIS B 205 UNP Q9UBQ0 EXPRESSION TAG SEQRES 1 A 963 MET ALA VAL PHE PRO TRP HIS SER ARG ASN ARG ASN TYR SEQRES 2 A 963 LYS ALA GLU PHE ALA SER CYS ARG LEU GLU ALA VAL PRO SEQRES 3 A 963 LEU GLU PHE GLY ASP TYR HIS PRO LEU LYS PRO ILE THR SEQRES 4 A 963 VAL THR GLU SER LYS THR LYS LYS VAL ASN ARG LYS GLY SEQRES 5 A 963 SER THR SER SER THR SER SER SER SER SER SER SER VAL SEQRES 6 A 963 VAL ASP PRO LEU SER SER VAL LEU ASP GLY THR ASP PRO SEQRES 7 A 963 LEU SER MET PHE ALA ALA THR ALA ASP PRO ALA ALA LEU SEQRES 8 A 963 ALA ALA ALA MET ASP SER SER ARG ARG LYS ARG ASP ARG SEQRES 9 A 963 ASP ASP ASN SER VAL VAL GLY SER ASP PHE GLU PRO TRP SEQRES 10 A 963 THR ASN LYS ARG GLY GLU ILE LEU ALA ARG TYR THR THR SEQRES 11 A 963 THR GLU LYS LEU SER ILE ASN LEU PHE MET GLY SER GLU SEQRES 12 A 963 LYS GLY LYS ALA GLY THR ALA THR LEU ALA MET SER GLU SEQRES 13 A 963 LYS VAL ARG THR ARG LEU GLU GLU LEU ASP ASP PHE GLU SEQRES 14 A 963 GLU GLY SER GLN LYS GLU LEU LEU ASN LEU THR GLN GLN SEQRES 15 A 963 ASP TYR VAL ASN ARG ILE GLU GLU LEU ASN GLN SER LEU SEQRES 16 A 963 LYS ASP ALA TRP ALA SER ASP GLN LYS VAL LYS ALA LEU SEQRES 17 A 963 LYS ILE VAL ILE GLN CYS SER LYS LEU LEU SER ASP THR SEQRES 18 A 963 SER VAL ILE GLN PHE TYR PRO SER LYS PHE VAL LEU ILE SEQRES 19 A 963 THR ASP ILE LEU ASP THR PHE GLY LYS LEU VAL TYR GLU SEQRES 20 A 963 ARG ILE PHE SER MET CYS VAL ASP SER ARG SER VAL LEU SEQRES 21 A 963 PRO ASP HIS PHE SER PRO GLU ASN ALA ASN ASP THR ALA SEQRES 22 A 963 LYS GLU THR CYS LEU ASN TRP PHE PHE LYS ILE ALA SER SEQRES 23 A 963 ILE ARG GLU LEU ILE PRO ARG PHE TYR VAL GLU ALA SER SEQRES 24 A 963 ILE LEU LYS CYS ASN LYS PHE LEU SER LYS THR GLY ILE SEQRES 25 A 963 SER GLU CYS LEU PRO ARG LEU THR CYS MET ILE ARG GLY SEQRES 26 A 963 ILE GLY ASP PRO LEU VAL SER VAL TYR ALA ARG ALA TYR SEQRES 27 A 963 LEU CYS ARG VAL GLY MET GLU VAL ALA PRO HIS LEU LYS SEQRES 28 A 963 GLU THR LEU ASN LYS ASN PHE PHE ASP PHE LEU LEU THR SEQRES 29 A 963 PHE LYS GLN ILE HIS GLY ASP THR VAL GLN ASN GLN LEU SEQRES 30 A 963 VAL VAL GLN GLY VAL GLU LEU PRO SER TYR LEU PRO LEU SEQRES 31 A 963 TYR PRO PRO ALA MET ASP TRP ILE PHE GLN CYS ILE SER SEQRES 32 A 963 TYR HIS ALA PRO GLU ALA LEU LEU THR GLU MET MET GLU SEQRES 33 A 963 ARG CYS LYS LYS LEU GLY ASN ASN ALA LEU LEU LEU ASN SEQRES 34 A 963 SER VAL MET SER ALA PHE ARG ALA GLU PHE ILE ALA THR SEQRES 35 A 963 ARG SER MET ASP PHE ILE GLY MET ILE LYS GLU CYS ASP SEQRES 36 A 963 GLU SER GLY PHE PRO LYS HIS LEU LEU PHE ARG SER LEU SEQRES 37 A 963 GLY LEU ASN LEU ALA LEU ALA ASP PRO PRO GLU SER ASP SEQRES 38 A 963 ARG LEU GLN ILE LEU ASN GLU ALA TRP LYS VAL ILE THR SEQRES 39 A 963 LYS LEU LYS ASN PRO GLN ASP TYR ILE ASN CYS ALA GLU SEQRES 40 A 963 VAL TRP VAL GLU TYR THR CYS LYS HIS PHE THR LYS ARG SEQRES 41 A 963 GLU VAL ASN THR VAL LEU ALA ASP VAL ILE LYS HIS MET SEQRES 42 A 963 THR PRO ASP ARG ALA PHE GLU ASP SER TYR PRO GLN LEU SEQRES 43 A 963 GLN LEU ILE ILE LYS LYS VAL ILE ALA HIS PHE HIS ASP SEQRES 44 A 963 PHE SER VAL LEU PHE SER VAL GLU LYS PHE LEU PRO PHE SEQRES 45 A 963 LEU ASP MET PHE GLN LYS GLU SER VAL ARG VAL GLU VAL SEQRES 46 A 963 CYS LYS CYS ILE MET ASP ALA PHE ILE LYS HIS GLN GLN SEQRES 47 A 963 GLU PRO THR LYS ASP PRO VAL ILE LEU ASN ALA LEU LEU SEQRES 48 A 963 HIS VAL CYS LYS THR MET HIS ASP SER VAL ASN ALA LEU SEQRES 49 A 963 THR LEU GLU ASP GLU LYS ARG MET LEU SER TYR LEU ILE SEQRES 50 A 963 ASN GLY PHE ILE LYS MET VAL SER PHE GLY ARG ASP PHE SEQRES 51 A 963 GLU GLN GLN LEU SER PHE TYR VAL GLU SER ARG SER MET SEQRES 52 A 963 PHE CYS ASN LEU GLU PRO VAL LEU VAL GLN LEU ILE HIS SEQRES 53 A 963 SER VAL ASN ARG LEU ALA MET GLU THR ARG LYS VAL MET SEQRES 54 A 963 LYS GLY ASN HIS SER ARG LYS THR ALA ALA PHE VAL ARG SEQRES 55 A 963 ALA CYS VAL ALA TYR CYS PHE ILE THR ILE PRO SER LEU SEQRES 56 A 963 ALA GLY ILE PHE THR ARG LEU ASN LEU TYR LEU HIS SER SEQRES 57 A 963 GLY GLN VAL ALA LEU ALA ASN GLN CYS LEU SER GLN ALA SEQRES 58 A 963 ASP ALA PHE PHE LYS ALA ALA ILE SER LEU VAL PRO GLU SEQRES 59 A 963 VAL PRO LYS MET ILE ASN ILE ASP GLY LYS MET ARG PRO SEQRES 60 A 963 SER GLU SER PHE LEU LEU GLU PHE LEU CYS ASN PHE PHE SEQRES 61 A 963 SER THR LEU LEU ILE VAL PRO ASP HIS PRO GLU HIS GLY SEQRES 62 A 963 VAL LEU PHE LEU VAL ARG GLU LEU LEU ASN VAL ILE GLN SEQRES 63 A 963 ASP TYR THR TRP GLU ASP ASN SER ASP GLU LYS ILE ARG SEQRES 64 A 963 ILE TYR THR CYS VAL LEU HIS LEU LEU SER ALA MET SER SEQRES 65 A 963 GLN GLU THR TYR LEU TYR HIS ILE ASP LYS VAL ASP SER SEQRES 66 A 963 ASN ASP SER LEU TYR GLY GLY ASP SER LYS PHE LEU ALA SEQRES 67 A 963 GLU ASN ASN LYS LEU CYS GLU THR VAL MET ALA GLN ILE SEQRES 68 A 963 LEU GLU HIS LEU LYS THR LEU ALA LYS ASP GLU ALA LEU SEQRES 69 A 963 LYS ARG GLN SER SER LEU GLY LEU SER PHE PHE ASN SER SEQRES 70 A 963 ILE LEU ALA HIS GLY ASP LEU ARG ASN ASN LYS LEU ASN SEQRES 71 A 963 GLN LEU SER VAL ASN LEU TRP HIS LEU ALA GLN ARG HIS SEQRES 72 A 963 GLY CYS ALA ASP THR ARG THR MET VAL LYS THR LEU GLU SEQRES 73 A 963 TYR ILE LYS LYS GLN SER LYS GLN PRO ASP MET THR HIS SEQRES 74 A 963 LEU THR GLU LEU ALA LEU ARG LEU PRO LEU GLN THR ARG SEQRES 75 A 963 THR SEQRES 1 B 205 MET ALA GLY HIS ARG LEU VAL LEU VAL LEU GLY ASP LEU SEQRES 2 B 205 HIS ILE PRO HIS ARG CYS ASN SER LEU PRO ALA LYS PHE SEQRES 3 B 205 LYS LYS LEU LEU VAL PRO GLY LYS ILE GLN HIS ILE LEU SEQRES 4 B 205 CYS THR GLY ASN LEU CYS THR LYS GLU SER TYR ASP TYR SEQRES 5 B 205 LEU LYS THR LEU ALA GLY ASP VAL HIS ILE VAL ARG GLY SEQRES 6 B 205 ASP PHE ASP GLU ASN LEU ASN TYR PRO GLU GLN LYS VAL SEQRES 7 B 205 VAL THR VAL GLY GLN PHE LYS ILE GLY LEU ILE HIS GLY SEQRES 8 B 205 HIS GLN VAL ILE PRO TRP GLY ASP MET ALA SER LEU ALA SEQRES 9 B 205 LEU LEU GLN ARG GLN PHE ASP VAL ASP ILE LEU ILE SER SEQRES 10 B 205 GLY HIS THR HIS LYS PHE GLU ALA PHE GLU HIS GLU ASN SEQRES 11 B 205 LYS PHE TYR ILE ASN PRO GLY SER ALA THR GLY ALA TYR SEQRES 12 B 205 ASN ALA LEU GLU THR ASN ILE ILE PRO SER PHE VAL LEU SEQRES 13 B 205 MET ASP ILE GLN ALA SER THR VAL VAL THR TYR VAL TYR SEQRES 14 B 205 GLN LEU ILE GLY ASP ASP VAL LYS VAL GLU ARG ILE GLU SEQRES 15 B 205 TYR LYS LYS PRO GLU ASN LEU TYR PHE GLN GLY GLY GLY SEQRES 16 B 205 SER GLY GLY SER HIS HIS HIS HIS HIS HIS HELIX 1 AA1 ASN A 12 ARG A 21 1 10 HELIX 2 AA2 ARG A 582 GLN A 597 1 16 HELIX 3 AA3 ASN A 608 ASP A 619 1 12 HELIX 4 AA4 LEU A 626 MET A 643 1 18 HELIX 5 AA5 ASP A 649 PHE A 664 1 16 HELIX 6 AA6 LEU A 667 MET A 689 1 23 HELIX 7 AA7 SER A 694 ILE A 712 1 19 HELIX 8 AA8 PRO A 713 LEU A 715 5 3 HELIX 9 AA9 GLY A 717 ALA A 734 1 18 HELIX 10 AB1 CYS A 737 VAL A 752 1 16 HELIX 11 AB2 PRO A 753 VAL A 755 5 3 HELIX 12 AB3 SER A 768 LEU A 783 1 16 HELIX 13 AB4 LEU A 795 TYR A 808 1 14 HELIX 14 AB5 ASP A 815 SER A 832 1 18 HELIX 15 AB6 SER A 845 TYR A 850 1 6 HELIX 16 AB7 ASP A 853 GLU A 882 1 30 HELIX 17 AB8 ALA A 883 GLY A 902 1 20 HELIX 18 AB9 ASN A 906 HIS A 923 1 18 HELIX 19 AC1 PRO B 23 LEU B 30 1 8 HELIX 20 AC2 THR B 46 THR B 55 1 10 HELIX 21 AC3 ASP B 99 ASP B 111 1 13 SHEET 1 AA1 7 VAL A 25 PRO A 26 0 SHEET 2 AA1 7 ASP B 175 LYS B 184 -1 O ARG B 180 N VAL A 25 SHEET 3 AA1 7 THR B 163 ILE B 172 -1 N ILE B 172 O ASP B 175 SHEET 4 AA1 7 SER B 153 GLN B 160 -1 N LEU B 156 O TYR B 167 SHEET 5 AA1 7 ARG B 5 LEU B 10 -1 N ARG B 5 O ILE B 159 SHEET 6 AA1 7 HIS B 37 CYS B 40 1 O HIS B 37 N LEU B 6 SHEET 7 AA1 7 ASP B 59 ILE B 62 1 O HIS B 61 N CYS B 40 SHEET 1 AA2 2 MET A 758 ILE A 761 0 SHEET 2 AA2 2 LYS A 764 PRO A 767 -1 O ARG A 766 N ILE A 759 SHEET 1 AA3 5 GLN B 76 VAL B 81 0 SHEET 2 AA3 5 PHE B 84 ILE B 89 -1 O LEU B 88 N LYS B 77 SHEET 3 AA3 5 ILE B 114 SER B 117 1 O ILE B 114 N GLY B 87 SHEET 4 AA3 5 PHE B 132 ASN B 135 1 O PHE B 132 N LEU B 115 SHEET 5 AA3 5 GLU B 124 GLU B 127 -1 N GLU B 124 O ASN B 135 CISPEP 1 ILE B 15 PRO B 16 0 -1.30 CISPEP 2 ILE B 95 PRO B 96 0 -4.66 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000