HEADER HYDROLASE 30-MAY-23 8SZU TITLE STRUCTURE OF KDAC1-CITARINOSTAT COMPLEX FROM ACINETOBACTER BAUMANNII COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE DEACETYLASE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, HISTONE DEACETYLASE, METALLOHYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.R.WATSON,D.W.CHRISTIANSON REVDAT 3 08-NOV-23 8SZU 1 COMPND HETNAM HETSYN REVDAT 2 04-OCT-23 8SZU 1 JRNL REVDAT 1 06-SEP-23 8SZU 0 JRNL AUTH P.R.WATSON,D.W.CHRISTIANSON JRNL TITL STRUCTURE AND FUNCTION OF KDAC1, A CLASS II DEACETYLASE FROM JRNL TITL 2 THE MULTIDRUG-RESISTANT PATHOGEN ACINETOBACTER BAUMANNII . JRNL REF BIOCHEMISTRY V. 62 2689 2023 JRNL REFN ISSN 0006-2960 JRNL PMID 37624144 JRNL DOI 10.1021/ACS.BIOCHEM.3C00288 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.100 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 69154 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 3513 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.7300 - 5.1000 1.00 2903 146 0.1809 0.1971 REMARK 3 2 5.1000 - 4.0500 1.00 2742 148 0.1463 0.1667 REMARK 3 3 4.0500 - 3.5400 1.00 2682 156 0.1735 0.1933 REMARK 3 4 3.5400 - 3.2200 1.00 2667 150 0.1907 0.2305 REMARK 3 5 3.2200 - 2.9900 1.00 2671 135 0.2057 0.2612 REMARK 3 6 2.9900 - 2.8100 1.00 2641 168 0.2024 0.2293 REMARK 3 7 2.8100 - 2.6700 1.00 2641 127 0.2050 0.2233 REMARK 3 8 2.6700 - 2.5500 1.00 2617 147 0.1904 0.2039 REMARK 3 9 2.5500 - 2.4500 1.00 2618 152 0.1934 0.2075 REMARK 3 10 2.4500 - 2.3700 1.00 2594 142 0.1829 0.1769 REMARK 3 11 2.3700 - 2.3000 1.00 2614 153 0.1790 0.2402 REMARK 3 12 2.3000 - 2.2300 1.00 2622 135 0.1815 0.1666 REMARK 3 13 2.2300 - 2.1700 1.00 2609 136 0.1763 0.2127 REMARK 3 14 2.1700 - 2.1200 1.00 2599 140 0.1752 0.1965 REMARK 3 15 2.1200 - 2.0700 1.00 2610 131 0.1744 0.2176 REMARK 3 16 2.0700 - 2.0300 1.00 2631 128 0.1798 0.2204 REMARK 3 17 2.0300 - 1.9900 1.00 2602 143 0.1753 0.2099 REMARK 3 18 1.9900 - 1.9500 1.00 2604 129 0.1764 0.2236 REMARK 3 19 1.9500 - 1.9100 1.00 2577 141 0.1751 0.2052 REMARK 3 20 1.9100 - 1.8800 1.00 2604 124 0.1864 0.2154 REMARK 3 21 1.8800 - 1.8500 1.00 2596 148 0.1951 0.2566 REMARK 3 22 1.8500 - 1.8200 1.00 2578 148 0.1959 0.2424 REMARK 3 23 1.8200 - 1.8000 1.00 2574 133 0.2061 0.2811 REMARK 3 24 1.8000 - 1.7700 1.00 2605 126 0.2152 0.2460 REMARK 3 25 1.7700 - 1.7500 0.95 2440 127 0.2222 0.2698 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.158 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5544 REMARK 3 ANGLE : 0.949 7540 REMARK 3 CHIRALITY : 0.057 832 REMARK 3 PLANARITY : 0.007 975 REMARK 3 DIHEDRAL : 11.403 772 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SZU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000274885. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, ZANUDA REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 783129 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 43.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MG/ML KDAC1 0.2 M MAGNESIUM CHLORIDE REMARK 280 HEXAHYDRATE AND 20% PEG 3,350 (W/V) SEEDED, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.32250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.29700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.29700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.16125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.29700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.29700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 153.48375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.29700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.29700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.16125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.29700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.29700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 153.48375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 102.32250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 102.32250 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 637 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 20 REMARK 465 GLY A 21 REMARK 465 VAL A 22 REMARK 465 PHE A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 17 REMARK 465 GLY B 18 REMARK 465 THR B 19 REMARK 465 GLY B 20 REMARK 465 GLY B 21 REMARK 465 VAL B 22 REMARK 465 PHE B 23 REMARK 465 VAL B 88 REMARK 465 SER B 89 REMARK 465 ASN B 90 REMARK 465 LYS B 91 REMARK 465 GLU B 92 REMARK 465 CYS B 93 REMARK 465 GLY B 94 REMARK 465 GLY B 95 REMARK 465 ASP B 96 REMARK 465 ILE B 97 REMARK 465 GLY B 98 REMARK 465 ASP B 99 REMARK 465 ARG B 100 REMARK 465 VAL B 101 REMARK 465 THR B 102 REMARK 465 HIS B 103 REMARK 465 LEU B 104 REMARK 465 GLY B 105 REMARK 465 ASN B 106 REMARK 465 ASN B 370 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CE REMARK 470 LYS A 29 CD CE NZ REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 GLN A 80 CD OE1 NE2 REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 470 CYS A 93 SG REMARK 470 ARG A 100 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 LYS A 173 CE NZ REMARK 470 ASN A 223 CG OD1 ND2 REMARK 470 LYS A 248 CG CD CE NZ REMARK 470 GLU A 258 CD OE1 OE2 REMARK 470 LYS A 287 CD CE NZ REMARK 470 LEU A 294 CG CD1 CD2 REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 GLU A 299 CG CD OE1 OE2 REMARK 470 VAL A 343 CG1 CG2 REMARK 470 HIS A 354 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 357 CG CD CE NZ REMARK 470 LYS B 2 CG CD CE NZ REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 LYS B 64 CE NZ REMARK 470 LYS B 79 CG CD CE NZ REMARK 470 GLN B 80 CG CD OE1 NE2 REMARK 470 ASN B 84 CG OD1 ND2 REMARK 470 ASN B 87 CG OD1 ND2 REMARK 470 LYS B 147 CG CD CE NZ REMARK 470 LYS B 148 CG CD CE NZ REMARK 470 LYS B 173 CE NZ REMARK 470 LYS B 207 CE NZ REMARK 470 ASN B 223 CG OD1 ND2 REMARK 470 GLU B 284 CG CD OE1 OE2 REMARK 470 LYS B 287 CD CE NZ REMARK 470 GLU B 295 CD OE1 OE2 REMARK 470 LYS B 304 CE NZ REMARK 470 ILE B 340 CG1 CG2 CD1 REMARK 470 GLU B 345 CG CD OE1 OE2 REMARK 470 GLU B 350 CG CD OE1 OE2 REMARK 470 HIS B 354 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 357 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 153 -1.59 73.80 REMARK 500 VAL A 249 -56.84 -125.53 REMARK 500 ASN A 301 25.02 -143.35 REMARK 500 GLU A 310 -124.00 -112.03 REMARK 500 ASN B 39 33.68 -91.02 REMARK 500 PHE B 153 -2.19 71.67 REMARK 500 VAL B 249 -61.15 -123.62 REMARK 500 ASN B 301 33.42 -142.52 REMARK 500 GLU B 310 -121.71 -110.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 691 DISTANCE = 6.08 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 X4U A 402 REMARK 610 X4U B 401 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 404 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 179 O REMARK 620 2 ASP A 179 OD1 66.6 REMARK 620 3 ASP A 181 O 99.5 91.8 REMARK 620 4 HIS A 183 O 170.2 104.0 77.5 REMARK 620 5 SER A 202 OG 92.3 115.8 152.4 94.4 REMARK 620 6 ILE A 203 O 72.7 130.0 67.2 113.9 93.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 181 OD1 REMARK 620 2 ASP A 181 OD2 58.3 REMARK 620 3 HIS A 183 ND1 94.8 152.9 REMARK 620 4 ASP A 269 OD2 105.5 90.3 94.8 REMARK 620 5 X4U A 401 O31 163.0 116.6 89.9 90.3 REMARK 620 6 X4U A 401 O33 86.9 86.7 95.3 163.3 76.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 405 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 192 O REMARK 620 2 ASP A 195 O 72.3 REMARK 620 3 VAL A 198 O 121.6 76.4 REMARK 620 4 TYR A 227 O 155.3 117.2 83.0 REMARK 620 5 HOH A 521 O 79.3 95.5 152.3 77.2 REMARK 620 6 HOH A 591 O 66.7 139.0 124.7 101.1 78.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 404 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 179 O REMARK 620 2 ASP B 179 OD1 67.6 REMARK 620 3 ASP B 181 O 99.1 90.4 REMARK 620 4 HIS B 183 O 171.7 104.7 77.3 REMARK 620 5 SER B 202 OG 91.2 116.7 152.9 95.3 REMARK 620 6 ILE B 203 O 70.8 128.1 66.8 113.8 93.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 181 OD1 REMARK 620 2 ASP B 181 OD2 57.6 REMARK 620 3 HIS B 183 ND1 94.7 152.1 REMARK 620 4 ASP B 269 OD2 105.4 90.6 94.8 REMARK 620 5 X4U B 402 O31 163.9 116.7 90.7 89.3 REMARK 620 6 X4U B 402 O33 87.7 85.5 96.9 161.7 76.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 405 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP B 192 O REMARK 620 2 ASP B 195 O 72.8 REMARK 620 3 VAL B 198 O 124.3 78.2 REMARK 620 4 TYR B 227 O 154.0 118.2 81.7 REMARK 620 5 HOH B 521 O 68.6 141.1 120.6 99.0 REMARK 620 6 HOH B 551 O 78.0 94.7 151.7 77.7 81.9 REMARK 620 N 1 2 3 4 5 DBREF 8SZU A 1 370 UNP R8YPJ7 R8YPJ7_ACIPI 1 370 DBREF 8SZU B 1 370 UNP R8YPJ7 R8YPJ7_ACIPI 1 370 SEQADV 8SZU GLY A -1 UNP R8YPJ7 EXPRESSION TAG SEQADV 8SZU HIS A 0 UNP R8YPJ7 EXPRESSION TAG SEQADV 8SZU ILE A 4 UNP R8YPJ7 VAL 4 CONFLICT SEQADV 8SZU TYR A 66 UNP R8YPJ7 HIS 66 CONFLICT SEQADV 8SZU VAL A 101 UNP R8YPJ7 ILE 101 CONFLICT SEQADV 8SZU ILE A 340 UNP R8YPJ7 MET 340 CONFLICT SEQADV 8SZU GLY B -1 UNP R8YPJ7 EXPRESSION TAG SEQADV 8SZU HIS B 0 UNP R8YPJ7 EXPRESSION TAG SEQADV 8SZU ILE B 4 UNP R8YPJ7 VAL 4 CONFLICT SEQADV 8SZU TYR B 66 UNP R8YPJ7 HIS 66 CONFLICT SEQADV 8SZU VAL B 101 UNP R8YPJ7 ILE 101 CONFLICT SEQADV 8SZU ILE B 340 UNP R8YPJ7 MET 340 CONFLICT SEQRES 1 A 372 GLY HIS MET LYS LYS ILE GLY TYR VAL TRP ASP THR LEU SEQRES 2 A 372 TYR SER TRP VAL ASP THR GLY THR GLY GLY VAL PHE ALA SEQRES 3 A 372 ALA ASN LEU SER LYS ARG ILE GLN PRO ILE THR HIS HIS SEQRES 4 A 372 MET ASN HIS PRO ASP THR LYS ARG ARG PHE ASN GLU LEU SEQRES 5 A 372 VAL MET THR SER GLY GLN ILE ASP PHE LEU THR PRO ILE SEQRES 6 A 372 LYS PRO TYR PRO ALA THR ASP ALA ASP ILE LEU ARG VAL SEQRES 7 A 372 HIS ASP LYS GLN LEU LEU ASP ASN ALA LYS ASN VAL SER SEQRES 8 A 372 ASN LYS GLU CYS GLY GLY ASP ILE GLY ASP ARG VAL THR SEQRES 9 A 372 HIS LEU GLY ASN GLY GLY ILE GLU ILE ALA TYR LEU SER SEQRES 10 A 372 ALA GLY GLY ALA ILE GLU LEU THR LYS LYS VAL ILE SER SEQRES 11 A 372 GLY GLU LEU HIS THR GLY TYR ALA LEU VAL SER PRO PRO SEQRES 12 A 372 GLY HIS HIS ALA THR LYS LYS ASP SER MET GLY PHE CYS SEQRES 13 A 372 ILE PHE ASN ASN THR SER ILE ALA ALA ALA TYR ALA LYS SEQRES 14 A 372 ASP ILE LEU GLY LEU LYS ARG VAL ALA ILE VAL ASP TRP SEQRES 15 A 372 ASP VAL HIS HIS GLY ASN GLY THR GLN ASP ILE TRP TRP SEQRES 16 A 372 GLU ASP SER SER VAL LEU THR ILE SER ILE HIS GLN ASN SEQRES 17 A 372 LYS CYS PHE PRO THR ASN SER GLY PHE ILE ASN GLU ARG SEQRES 18 A 372 GLY ALA GLY ASN GLY PHE GLY TYR ASN LEU ASN ILE PRO SEQRES 19 A 372 LEU PRO PRO GLY SER GLY ASN GLY ALA TYR ILE TYR ALA SEQRES 20 A 372 PHE GLU LYS VAL ILE VAL PRO ALA LEU LYS LYS TYR GLU SEQRES 21 A 372 PRO GLU LEU ILE ILE VAL GLY SER GLY PHE ASP ALA SER SEQRES 22 A 372 ILE LEU ASP PRO LEU SER ARG MET MET VAL SER SER GLU SEQRES 23 A 372 GLY PHE LYS LYS MET ALA SER LEU ILE LEU GLU VAL SER SEQRES 24 A 372 ASN GLU ILE ASN GLY GLY LYS CYS LEU PHE VAL GLN GLU SEQRES 25 A 372 GLY GLY TYR SER PRO HIS TYR LEU PRO PHE CYS GLY LEU SEQRES 26 A 372 ALA VAL ILE GLU ALA LEU THR GLY MET HIS THR LEU ASP SEQRES 27 A 372 ASP PRO LEU ILE ASP MET VAL GLY GLU MET GLY GLY ASN SEQRES 28 A 372 GLU LEU LEU PRO HIS GLU LYS LYS VAL VAL ASP GLU CYS SEQRES 29 A 372 ALA ASN LEU ILE ALA ASP ILE ASN SEQRES 1 B 372 GLY HIS MET LYS LYS ILE GLY TYR VAL TRP ASP THR LEU SEQRES 2 B 372 TYR SER TRP VAL ASP THR GLY THR GLY GLY VAL PHE ALA SEQRES 3 B 372 ALA ASN LEU SER LYS ARG ILE GLN PRO ILE THR HIS HIS SEQRES 4 B 372 MET ASN HIS PRO ASP THR LYS ARG ARG PHE ASN GLU LEU SEQRES 5 B 372 VAL MET THR SER GLY GLN ILE ASP PHE LEU THR PRO ILE SEQRES 6 B 372 LYS PRO TYR PRO ALA THR ASP ALA ASP ILE LEU ARG VAL SEQRES 7 B 372 HIS ASP LYS GLN LEU LEU ASP ASN ALA LYS ASN VAL SER SEQRES 8 B 372 ASN LYS GLU CYS GLY GLY ASP ILE GLY ASP ARG VAL THR SEQRES 9 B 372 HIS LEU GLY ASN GLY GLY ILE GLU ILE ALA TYR LEU SER SEQRES 10 B 372 ALA GLY GLY ALA ILE GLU LEU THR LYS LYS VAL ILE SER SEQRES 11 B 372 GLY GLU LEU HIS THR GLY TYR ALA LEU VAL SER PRO PRO SEQRES 12 B 372 GLY HIS HIS ALA THR LYS LYS ASP SER MET GLY PHE CYS SEQRES 13 B 372 ILE PHE ASN ASN THR SER ILE ALA ALA ALA TYR ALA LYS SEQRES 14 B 372 ASP ILE LEU GLY LEU LYS ARG VAL ALA ILE VAL ASP TRP SEQRES 15 B 372 ASP VAL HIS HIS GLY ASN GLY THR GLN ASP ILE TRP TRP SEQRES 16 B 372 GLU ASP SER SER VAL LEU THR ILE SER ILE HIS GLN ASN SEQRES 17 B 372 LYS CYS PHE PRO THR ASN SER GLY PHE ILE ASN GLU ARG SEQRES 18 B 372 GLY ALA GLY ASN GLY PHE GLY TYR ASN LEU ASN ILE PRO SEQRES 19 B 372 LEU PRO PRO GLY SER GLY ASN GLY ALA TYR ILE TYR ALA SEQRES 20 B 372 PHE GLU LYS VAL ILE VAL PRO ALA LEU LYS LYS TYR GLU SEQRES 21 B 372 PRO GLU LEU ILE ILE VAL GLY SER GLY PHE ASP ALA SER SEQRES 22 B 372 ILE LEU ASP PRO LEU SER ARG MET MET VAL SER SER GLU SEQRES 23 B 372 GLY PHE LYS LYS MET ALA SER LEU ILE LEU GLU VAL SER SEQRES 24 B 372 ASN GLU ILE ASN GLY GLY LYS CYS LEU PHE VAL GLN GLU SEQRES 25 B 372 GLY GLY TYR SER PRO HIS TYR LEU PRO PHE CYS GLY LEU SEQRES 26 B 372 ALA VAL ILE GLU ALA LEU THR GLY MET HIS THR LEU ASP SEQRES 27 B 372 ASP PRO LEU ILE ASP MET VAL GLY GLU MET GLY GLY ASN SEQRES 28 B 372 GLU LEU LEU PRO HIS GLU LYS LYS VAL VAL ASP GLU CYS SEQRES 29 B 372 ALA ASN LEU ILE ALA ASP ILE ASN HET X4U A 401 33 HET X4U A 402 23 HET ZN A 403 1 HET K A 404 1 HET K A 405 1 HET X4U B 401 25 HET X4U B 402 33 HET ZN B 403 1 HET K B 404 1 HET K B 405 1 HETNAM X4U CITARINOSTAT HETNAM ZN ZINC ION HETNAM K POTASSIUM ION HETSYN X4U 2-[(2-CHLOROPHENYL)(PHENYL)AMINO]-N-[7-(HYDROXYAMINO)- HETSYN 2 X4U 7-OXOHEPTYL]PYRIMIDINE-5-CARBOXAMIDE FORMUL 3 X4U 4(C24 H26 CL N5 O3) FORMUL 5 ZN 2(ZN 2+) FORMUL 6 K 4(K 1+) FORMUL 13 HOH *332(H2 O) HELIX 1 AA1 ASP A 9 TRP A 14 5 6 HELIX 2 AA2 ASN A 26 ARG A 30 5 5 HELIX 3 AA3 PRO A 41 SER A 54 1 14 HELIX 4 AA4 GLY A 55 LEU A 60 5 6 HELIX 5 AA5 THR A 69 ARG A 75 1 7 HELIX 6 AA6 ASP A 78 LYS A 91 1 14 HELIX 7 AA7 GLY A 108 SER A 128 1 21 HELIX 8 AA8 ASN A 157 ILE A 169 1 13 HELIX 9 AA9 GLY A 185 TRP A 192 1 8 HELIX 10 AB1 ALA A 221 PHE A 225 5 5 HELIX 11 AB2 GLY A 238 VAL A 249 1 12 HELIX 12 AB3 VAL A 249 GLU A 258 1 10 HELIX 13 AB4 SER A 282 GLY A 302 1 21 HELIX 14 AB5 TYR A 317 GLY A 331 1 15 HELIX 15 AB6 LEU A 339 GLY A 344 1 6 HELIX 16 AB7 LEU A 352 ASN A 364 1 13 HELIX 17 AB8 LEU A 365 ILE A 369 5 5 HELIX 18 AB9 ASP B 9 TRP B 14 5 6 HELIX 19 AC1 PRO B 41 SER B 54 1 14 HELIX 20 AC2 GLY B 55 ASP B 58 5 4 HELIX 21 AC3 THR B 69 ARG B 75 1 7 HELIX 22 AC4 ASP B 78 ASN B 87 1 10 HELIX 23 AC5 GLY B 108 SER B 128 1 21 HELIX 24 AC6 ASN B 157 ILE B 169 1 13 HELIX 25 AC7 GLY B 185 TRP B 192 1 8 HELIX 26 AC8 ALA B 221 PHE B 225 5 5 HELIX 27 AC9 GLY B 238 VAL B 249 1 12 HELIX 28 AD1 VAL B 249 GLU B 258 1 10 HELIX 29 AD2 SER B 282 ASN B 301 1 20 HELIX 30 AD3 TYR B 317 GLY B 331 1 15 HELIX 31 AD4 LEU B 339 GLU B 345 1 7 HELIX 32 AD5 LEU B 352 ASN B 364 1 13 HELIX 33 AD6 LEU B 365 ILE B 369 5 5 SHEET 1 AA1 8 THR A 61 ILE A 63 0 SHEET 2 AA1 8 ILE A 4 VAL A 7 1 N ILE A 4 O THR A 61 SHEET 3 AA1 8 THR A 133 ALA A 136 1 O THR A 133 N GLY A 5 SHEET 4 AA1 8 CYS A 305 GLN A 309 1 O PHE A 307 N ALA A 136 SHEET 5 AA1 8 LEU A 261 SER A 266 1 N VAL A 264 O LEU A 306 SHEET 6 AA1 8 VAL A 175 ASP A 179 1 N ALA A 176 O ILE A 263 SHEET 7 AA1 8 VAL A 198 GLN A 205 1 O LEU A 199 N ILE A 177 SHEET 8 AA1 8 ASN A 228 LEU A 233 1 O ILE A 231 N SER A 202 SHEET 1 AA2 2 GLY A 95 ASP A 96 0 SHEET 2 AA2 2 HIS A 103 LEU A 104 -1 O LEU A 104 N GLY A 95 SHEET 1 AA3 8 LEU B 60 ILE B 63 0 SHEET 2 AA3 8 ILE B 4 VAL B 7 1 N ILE B 4 O THR B 61 SHEET 3 AA3 8 THR B 133 ALA B 136 1 O THR B 133 N GLY B 5 SHEET 4 AA3 8 CYS B 305 GLN B 309 1 O PHE B 307 N ALA B 136 SHEET 5 AA3 8 LEU B 261 SER B 266 1 N VAL B 264 O VAL B 308 SHEET 6 AA3 8 VAL B 175 ASP B 179 1 N ALA B 176 O ILE B 263 SHEET 7 AA3 8 VAL B 198 GLN B 205 1 O ILE B 201 N ILE B 177 SHEET 8 AA3 8 ASN B 228 LEU B 233 1 O ILE B 231 N SER B 202 LINK O ASP A 179 K K A 404 1555 1555 2.94 LINK OD1 ASP A 179 K K A 404 1555 1555 2.76 LINK OD1 ASP A 181 ZN ZN A 403 1555 1555 2.09 LINK OD2 ASP A 181 ZN ZN A 403 1555 1555 2.42 LINK O ASP A 181 K K A 404 1555 1555 2.55 LINK ND1 HIS A 183 ZN ZN A 403 1555 1555 2.26 LINK O HIS A 183 K K A 404 1555 1555 2.68 LINK O TRP A 192 K K A 405 1555 1555 2.73 LINK O ASP A 195 K K A 405 1555 1555 2.88 LINK O VAL A 198 K K A 405 1555 1555 2.64 LINK OG SER A 202 K K A 404 1555 1555 2.80 LINK O ILE A 203 K K A 404 1555 1555 2.78 LINK O TYR A 227 K K A 405 1555 1555 2.85 LINK OD2 ASP A 269 ZN ZN A 403 1555 1555 2.04 LINK O31 X4U A 401 ZN ZN A 403 1555 1555 2.25 LINK O33 X4U A 401 ZN ZN A 403 1555 1555 2.11 LINK K K A 405 O HOH A 521 1555 1555 2.66 LINK K K A 405 O HOH A 591 1555 1555 2.89 LINK O ASP B 179 K K B 404 1555 1555 2.97 LINK OD1 ASP B 179 K K B 404 1555 1555 2.89 LINK OD1 ASP B 181 ZN ZN B 403 1555 1555 2.16 LINK OD2 ASP B 181 ZN ZN B 403 1555 1555 2.37 LINK O ASP B 181 K K B 404 1555 1555 2.53 LINK ND1 HIS B 183 ZN ZN B 403 1555 1555 2.26 LINK O HIS B 183 K K B 404 1555 1555 2.64 LINK O TRP B 192 K K B 405 1555 1555 2.64 LINK O ASP B 195 K K B 405 1555 1555 2.81 LINK O VAL B 198 K K B 405 1555 1555 2.65 LINK OG SER B 202 K K B 404 1555 1555 2.81 LINK O ILE B 203 K K B 404 1555 1555 2.86 LINK O TYR B 227 K K B 405 1555 1555 2.90 LINK OD2 ASP B 269 ZN ZN B 403 1555 1555 2.05 LINK O31 X4U B 402 ZN ZN B 403 1555 1555 2.22 LINK O33 X4U B 402 ZN ZN B 403 1555 1555 2.15 LINK K K B 405 O HOH B 521 1555 1555 2.74 LINK K K B 405 O HOH B 551 1555 1555 2.72 CISPEP 1 SER A 139 PRO A 140 0 2.08 CISPEP 2 PHE A 209 PRO A 210 0 -8.77 CISPEP 3 SER B 139 PRO B 140 0 2.21 CISPEP 4 PHE B 209 PRO B 210 0 -5.29 CRYST1 80.594 80.594 204.645 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012408 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012408 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004887 0.00000