HEADER PROTEIN BINDING 06-JUN-23 8T2N TITLE CRYSTAL STRUCTURE OF GABARAP IN COMPLEX WITH THE LIR OF NSS3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-AMINOBUTYRIC ACID RECEPTOR-ASSOCIATED PROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: GABA(A) RECEPTOR-ASSOCIATED PROTEIN,MM46; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NON-STRUCTURAL PROTEIN S; COMPND 8 CHAIN: B, D; COMPND 9 SYNONYM: NSS; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GABARAP, FLC3B, HT004; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: RIFT VALLEY FEVER VIRUS; SOURCE 10 ORGANISM_TAXID: 11588; SOURCE 11 GENE: NSS; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS RIFT VALLEY FEVER VIRUS, AUTOPHAGY, LC3, GABARAP, LIR, PROTEIN KEYWDS 2 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.G.H.ALI,H.M.WAHBA,N.CYR,J.G.OMICHINSKI REVDAT 1 03-APR-24 8T2N 0 JRNL AUTH K.PETRACCIONE,M.G.H.ALI,N.CYR,H.M.WAHBA,T.STOCKER, JRNL AUTH 2 M.AKHRYMUK,I.AKHRYMUK,L.PANNY,N.BRACCI,R.CAFARO,D.SASTRE, JRNL AUTH 3 A.SILBERFARB,P.O'MAILLE,J.OMICHINSKI,K.KEHN-HALL JRNL TITL AN LIR MOTIF IN THE RIFT VALLEY FEVER VIRUS NSS PROTEIN IS JRNL TITL 2 CRITICAL FOR THE INTERACTION WITH LC3 FAMILY MEMBERS AND JRNL TITL 3 INHIBITION OF AUTOPHAGY. JRNL REF PLOS PATHOG. V. 20 12093 2024 JRNL REFN ESSN 1553-7374 JRNL PMID 38512999 JRNL DOI 10.1371/JOURNAL.PPAT.1012093 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.2 REMARK 3 NUMBER OF REFLECTIONS : 19739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.7400 - 4.5200 1.00 1525 169 0.1793 0.2203 REMARK 3 2 4.5200 - 3.5900 1.00 1457 165 0.1823 0.2195 REMARK 3 3 3.5900 - 3.1400 1.00 1440 158 0.2193 0.2870 REMARK 3 4 3.1400 - 2.8500 1.00 1447 165 0.2620 0.2918 REMARK 3 5 2.8500 - 2.6500 1.00 1449 147 0.2704 0.3173 REMARK 3 6 2.6500 - 2.4900 1.00 1450 159 0.2520 0.2933 REMARK 3 7 2.4900 - 2.3700 1.00 1412 161 0.2639 0.3102 REMARK 3 8 2.3700 - 2.2600 1.00 1434 146 0.2787 0.3231 REMARK 3 9 2.2600 - 2.1800 1.00 1421 170 0.2981 0.3295 REMARK 3 10 2.1800 - 2.1000 0.97 1361 148 0.3356 0.3750 REMARK 3 11 2.1000 - 2.0400 0.88 1286 126 0.3609 0.4163 REMARK 3 12 2.0400 - 1.9800 0.66 928 103 0.4021 0.4298 REMARK 3 13 1.9800 - 1.9300 0.49 702 77 0.4202 0.4270 REMARK 3 14 1.9200 - 1.8800 0.34 469 64 0.4452 0.4867 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2253 REMARK 3 ANGLE : 0.557 3044 REMARK 3 CHIRALITY : 0.049 315 REMARK 3 PLANARITY : 0.004 392 REMARK 3 DIHEDRAL : 12.169 866 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7920 -11.8904 6.1885 REMARK 3 T TENSOR REMARK 3 T11: 0.5988 T22: 0.4918 REMARK 3 T33: 0.4558 T12: 0.0026 REMARK 3 T13: -0.0018 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 4.6805 L22: 1.3635 REMARK 3 L33: 3.5685 L12: -0.2053 REMARK 3 L13: 0.3868 L23: -0.3117 REMARK 3 S TENSOR REMARK 3 S11: -0.2517 S12: 0.9854 S13: 0.1817 REMARK 3 S21: -0.4468 S22: 0.0293 S23: 0.3431 REMARK 3 S31: -0.5124 S32: -0.4859 S33: -0.0108 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1464 -12.7744 18.1649 REMARK 3 T TENSOR REMARK 3 T11: 0.4808 T22: 0.4346 REMARK 3 T33: 0.5448 T12: -0.0008 REMARK 3 T13: 0.0460 T23: 0.0571 REMARK 3 L TENSOR REMARK 3 L11: 0.9213 L22: 2.0034 REMARK 3 L33: 2.6323 L12: -1.2290 REMARK 3 L13: 0.5429 L23: 0.1336 REMARK 3 S TENSOR REMARK 3 S11: 0.1105 S12: -0.0013 S13: 0.4072 REMARK 3 S21: -0.1637 S22: -0.0673 S23: -0.6405 REMARK 3 S31: -0.4643 S32: 0.3790 S33: -0.0009 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3280 -17.5569 11.5026 REMARK 3 T TENSOR REMARK 3 T11: 0.6602 T22: 0.5335 REMARK 3 T33: 0.6673 T12: 0.0171 REMARK 3 T13: 0.0824 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 1.0056 L22: 1.2262 REMARK 3 L33: 1.2358 L12: -0.9222 REMARK 3 L13: 0.0642 L23: 0.4719 REMARK 3 S TENSOR REMARK 3 S11: 0.1148 S12: 0.3764 S13: -0.3735 REMARK 3 S21: 0.1135 S22: -0.2579 S23: 0.7984 REMARK 3 S31: 0.5515 S32: -0.7979 S33: 0.0229 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2878 -6.3235 26.1485 REMARK 3 T TENSOR REMARK 3 T11: 1.0193 T22: 0.9486 REMARK 3 T33: 0.9956 T12: -0.1653 REMARK 3 T13: 0.1206 T23: -0.2468 REMARK 3 L TENSOR REMARK 3 L11: 0.3427 L22: 0.4000 REMARK 3 L33: 0.2345 L12: -0.3682 REMARK 3 L13: 0.0982 L23: -0.1361 REMARK 3 S TENSOR REMARK 3 S11: -0.4699 S12: -0.0967 S13: 1.0343 REMARK 3 S21: 0.2940 S22: 0.3819 S23: 1.3767 REMARK 3 S31: -0.8518 S32: -1.0639 S33: 0.0075 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 33 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8366 -16.5440 3.4049 REMARK 3 T TENSOR REMARK 3 T11: 0.8802 T22: 1.1712 REMARK 3 T33: 0.8848 T12: -0.0253 REMARK 3 T13: 0.1994 T23: 0.1781 REMARK 3 L TENSOR REMARK 3 L11: 0.5327 L22: 0.7083 REMARK 3 L33: 2.2961 L12: 0.6137 REMARK 3 L13: 1.1050 L23: 1.2758 REMARK 3 S TENSOR REMARK 3 S11: -0.2239 S12: -0.1834 S13: -0.6467 REMARK 3 S21: 0.3489 S22: 0.2389 S23: -0.7674 REMARK 3 S31: 0.9832 S32: 0.9457 S33: 0.0348 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.0356 -16.3088 9.9902 REMARK 3 T TENSOR REMARK 3 T11: 0.7154 T22: 1.0039 REMARK 3 T33: 0.6927 T12: -0.0626 REMARK 3 T13: -0.1575 T23: -0.0897 REMARK 3 L TENSOR REMARK 3 L11: 1.5398 L22: 0.2775 REMARK 3 L33: 2.0033 L12: 0.5979 REMARK 3 L13: -0.5608 L23: -0.4104 REMARK 3 S TENSOR REMARK 3 S11: 0.1313 S12: 1.5382 S13: -0.2088 REMARK 3 S21: -0.9835 S22: -0.3916 S23: 0.3353 REMARK 3 S31: 0.5228 S32: -0.2122 S33: -0.0083 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 25 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.1802 -13.2461 25.6767 REMARK 3 T TENSOR REMARK 3 T11: 0.3927 T22: 0.4021 REMARK 3 T33: 0.4929 T12: -0.0149 REMARK 3 T13: -0.0061 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 2.5078 L22: 1.6611 REMARK 3 L33: 6.1434 L12: -0.9284 REMARK 3 L13: 1.8037 L23: -0.4916 REMARK 3 S TENSOR REMARK 3 S11: 0.0313 S12: -0.0612 S13: -0.0147 REMARK 3 S21: 0.0887 S22: 0.1932 S23: 0.4410 REMARK 3 S31: 0.0245 S32: -0.6325 S33: 0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 33 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.8674 -15.0062 16.7484 REMARK 3 T TENSOR REMARK 3 T11: 0.7201 T22: 1.3971 REMARK 3 T33: 1.1066 T12: 0.0217 REMARK 3 T13: -0.1731 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 0.0616 L22: 0.1122 REMARK 3 L33: 0.2393 L12: 0.0165 REMARK 3 L13: 0.0016 L23: -0.1603 REMARK 3 S TENSOR REMARK 3 S11: -0.4112 S12: 0.0911 S13: -0.1201 REMARK 3 S21: -0.8478 S22: 0.6210 S23: 0.5830 REMARK 3 S31: 0.2518 S32: -0.5790 S33: -0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 38 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -47.9604 -0.5744 39.3798 REMARK 3 T TENSOR REMARK 3 T11: 1.1641 T22: 1.8010 REMARK 3 T33: 1.3288 T12: 0.1929 REMARK 3 T13: -0.0763 T23: -0.0962 REMARK 3 L TENSOR REMARK 3 L11: 0.2103 L22: 0.2881 REMARK 3 L33: 0.0969 L12: -0.2487 REMARK 3 L13: -0.1432 L23: 0.1692 REMARK 3 S TENSOR REMARK 3 S11: 0.0427 S12: -1.1769 S13: 0.0851 REMARK 3 S21: 1.0947 S22: 0.1046 S23: -0.7201 REMARK 3 S31: -0.1485 S32: 0.1721 S33: -0.0022 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8T2N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1000272373. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : 7B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96860 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20163 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 36.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM ACETATE, 20% PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 69.36250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 15.74250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 69.36250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 15.74250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 LEU A 117 REMARK 465 GLY B 29 REMARK 465 SER B 30 REMARK 465 GLY B 31 REMARK 465 ARG B 32 REMARK 465 ASP B 44 REMARK 465 VAL B 45 REMARK 465 GLU B 46 REMARK 465 MET B 47 REMARK 465 GLU B 48 REMARK 465 SER B 49 REMARK 465 GLU B 50 REMARK 465 GLU B 51 REMARK 465 GLU B 52 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 GLY D 29 REMARK 465 SER D 30 REMARK 465 GLY D 31 REMARK 465 ARG D 32 REMARK 465 GLU D 50 REMARK 465 GLU D 51 REMARK 465 GLU D 52 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 43 O HOH A 201 2.03 REMARK 500 N ASN D 33 O HOH D 101 2.06 REMARK 500 O HOH A 217 O HOH A 220 2.09 REMARK 500 O HOH C 215 O HOH C 221 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP D 44 134.41 77.25 REMARK 500 MET D 47 -165.35 -73.09 REMARK 500 REMARK 500 REMARK: NULL DBREF 8T2N A 1 117 UNP O95166 GBRAP_HUMAN 1 117 DBREF 8T2N B 31 52 UNP P21698 NSS_RVFVZ 234 255 DBREF 8T2N C 1 117 UNP O95166 GBRAP_HUMAN 1 117 DBREF 8T2N D 31 52 UNP P21698 NSS_RVFVZ 234 255 SEQADV 8T2N GLY A -1 UNP O95166 EXPRESSION TAG SEQADV 8T2N SER A 0 UNP O95166 EXPRESSION TAG SEQADV 8T2N GLY B 29 UNP P21698 EXPRESSION TAG SEQADV 8T2N SER B 30 UNP P21698 EXPRESSION TAG SEQADV 8T2N GLY C -1 UNP O95166 EXPRESSION TAG SEQADV 8T2N SER C 0 UNP O95166 EXPRESSION TAG SEQADV 8T2N GLY D 29 UNP P21698 EXPRESSION TAG SEQADV 8T2N SER D 30 UNP P21698 EXPRESSION TAG SEQRES 1 A 119 GLY SER MET LYS PHE VAL TYR LYS GLU GLU HIS PRO PHE SEQRES 2 A 119 GLU LYS ARG ARG SER GLU GLY GLU LYS ILE ARG LYS LYS SEQRES 3 A 119 TYR PRO ASP ARG VAL PRO VAL ILE VAL GLU LYS ALA PRO SEQRES 4 A 119 LYS ALA ARG ILE GLY ASP LEU ASP LYS LYS LYS TYR LEU SEQRES 5 A 119 VAL PRO SER ASP LEU THR VAL GLY GLN PHE TYR PHE LEU SEQRES 6 A 119 ILE ARG LYS ARG ILE HIS LEU ARG ALA GLU ASP ALA LEU SEQRES 7 A 119 PHE PHE PHE VAL ASN ASN VAL ILE PRO PRO THR SER ALA SEQRES 8 A 119 THR MET GLY GLN LEU TYR GLN GLU HIS HIS GLU GLU ASP SEQRES 9 A 119 PHE PHE LEU TYR ILE ALA TYR SER ASP GLU SER VAL TYR SEQRES 10 A 119 GLY LEU SEQRES 1 B 24 GLY SER GLY ARG ASN ASN TRP ILE PRO VAL ILE PRO PRO SEQRES 2 B 24 ILE PRO ASP VAL GLU MET GLU SER GLU GLU GLU SEQRES 1 C 119 GLY SER MET LYS PHE VAL TYR LYS GLU GLU HIS PRO PHE SEQRES 2 C 119 GLU LYS ARG ARG SER GLU GLY GLU LYS ILE ARG LYS LYS SEQRES 3 C 119 TYR PRO ASP ARG VAL PRO VAL ILE VAL GLU LYS ALA PRO SEQRES 4 C 119 LYS ALA ARG ILE GLY ASP LEU ASP LYS LYS LYS TYR LEU SEQRES 5 C 119 VAL PRO SER ASP LEU THR VAL GLY GLN PHE TYR PHE LEU SEQRES 6 C 119 ILE ARG LYS ARG ILE HIS LEU ARG ALA GLU ASP ALA LEU SEQRES 7 C 119 PHE PHE PHE VAL ASN ASN VAL ILE PRO PRO THR SER ALA SEQRES 8 C 119 THR MET GLY GLN LEU TYR GLN GLU HIS HIS GLU GLU ASP SEQRES 9 C 119 PHE PHE LEU TYR ILE ALA TYR SER ASP GLU SER VAL TYR SEQRES 10 C 119 GLY LEU SEQRES 1 D 24 GLY SER GLY ARG ASN ASN TRP ILE PRO VAL ILE PRO PRO SEQRES 2 D 24 ILE PRO ASP VAL GLU MET GLU SER GLU GLU GLU FORMUL 5 HOH *44(H2 O) HELIX 1 AA1 PHE A 3 HIS A 9 1 7 HELIX 2 AA2 PRO A 10 TYR A 25 1 16 HELIX 3 AA3 THR A 56 HIS A 69 1 14 HELIX 4 AA4 THR A 90 HIS A 99 1 10 HELIX 5 AA5 PHE C 3 HIS C 9 1 7 HELIX 6 AA6 PRO C 10 TYR C 25 1 16 HELIX 7 AA7 THR C 56 HIS C 69 1 14 HELIX 8 AA8 THR C 90 HIS C 99 1 10 SHEET 1 AA1 5 PHE A 77 PHE A 79 0 SHEET 2 AA1 5 LEU A 105 SER A 110 -1 O ALA A 108 N PHE A 79 SHEET 3 AA1 5 ARG A 28 LYS A 35 1 N ILE A 32 O LEU A 105 SHEET 4 AA1 5 LYS A 48 PRO A 52 -1 O TYR A 49 N VAL A 31 SHEET 5 AA1 5 ILE B 36 PRO B 37 1 O ILE B 36 N LYS A 48 SHEET 1 AA2 5 PHE C 77 PHE C 79 0 SHEET 2 AA2 5 LEU C 105 SER C 110 -1 O ALA C 108 N PHE C 79 SHEET 3 AA2 5 ARG C 28 LYS C 35 1 N ILE C 32 O LEU C 105 SHEET 4 AA2 5 LYS C 48 PRO C 52 -1 O TYR C 49 N VAL C 31 SHEET 5 AA2 5 ILE D 36 PRO D 37 1 O ILE D 36 N LEU C 50 CISPEP 1 TYR A 115 GLY A 116 0 -12.60 CISPEP 2 GLU D 48 SER D 49 0 -1.36 CRYST1 138.725 31.485 68.917 90.00 115.81 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007209 0.000000 0.003486 0.00000 SCALE2 0.000000 0.031761 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016118 0.00000